Wall clock time and date at job start Sat Apr 11 2020 05:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42891 * 114.00146 * 2 1 4 4 C 1.50697 * 109.47364 * 180.02562 * 3 2 1 5 5 N 1.29028 * 124.91863 * 89.71736 * 4 3 2 6 6 C 1.31791 * 117.12459 * 179.81981 * 5 4 3 7 7 C 1.50699 * 122.74814 * 180.22484 * 6 5 4 8 8 N 1.46495 * 109.47071 * 275.26547 * 7 6 5 9 9 C 1.34778 * 120.00208 * 180.02562 * 8 7 6 10 10 O 1.21584 * 119.99603 * 354.92142 * 9 8 7 11 11 N 1.34775 * 120.00653 * 174.91883 * 9 8 7 12 12 C 1.46933 * 120.62532 * 4.74295 * 11 9 8 13 13 C 1.52758 * 109.00692 * 233.58534 * 12 11 9 14 14 C 1.53042 * 109.38519 * 305.58431 * 13 12 11 15 15 C 1.53042 * 109.53082 * 61.24236 * 14 13 12 16 16 H 1.09002 * 109.49845 * 58.58945 * 15 14 13 17 17 C 1.50703 * 109.52179 * 178.66651 * 15 14 13 18 18 H 1.08005 * 119.99952 * 359.85778 * 17 15 14 19 19 C 1.37875 * 120.00036 * 179.85432 * 17 15 14 20 20 N 1.31512 * 120.00382 * 0.02562 * 19 17 15 21 21 Si 1.86806 * 119.99898 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47283 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47031 * 120.00268 * 21 19 17 24 24 H 1.48501 * 109.46848 * 240.00145 * 21 19 17 25 25 C 1.46925 * 120.63497 * 185.02358 * 11 9 8 26 26 C 1.33633 * 114.49860 * 0.46784 * 6 5 4 27 27 S 1.70979 * 124.91528 * 270.02422 * 4 3 2 28 28 H 1.09000 * 109.47236 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47202 * 300.00662 * 1 2 3 30 30 H 1.08996 * 109.46995 * 60.00248 * 1 2 3 31 31 H 1.09002 * 109.46896 * 299.99371 * 3 2 1 32 32 H 1.08997 * 109.47503 * 59.99892 * 3 2 1 33 33 H 1.09004 * 109.47382 * 35.26398 * 7 6 5 34 34 H 1.08997 * 109.47280 * 155.26298 * 7 6 5 35 35 H 0.97003 * 120.00189 * 359.97438 * 8 7 6 36 36 H 1.09002 * 109.58956 * 353.41920 * 12 11 9 37 37 H 1.09000 * 109.58793 * 113.84177 * 12 11 9 38 38 H 1.09001 * 109.56298 * 185.55324 * 13 12 11 39 39 H 1.08994 * 109.38932 * 65.51535 * 13 12 11 40 40 H 1.09003 * 109.45993 * 301.22846 * 14 13 12 41 41 H 1.08992 * 109.46132 * 181.25868 * 14 13 12 42 42 H 0.96994 * 120.00664 * 180.02562 * 20 19 17 43 43 H 1.09001 * 109.58445 * 246.15670 * 25 11 9 44 44 H 1.08997 * 109.58359 * 6.43956 * 25 11 9 45 45 H 1.08001 * 126.03704 * 179.79696 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2479 1.1231 -1.0589 6 6 5.5500 1.0245 -0.8808 7 6 6.5260 0.9472 -2.0264 8 7 6.6418 -0.4422 -2.4762 9 6 7.4646 -0.7536 -3.4973 10 8 8.0400 0.1285 -4.1050 11 7 7.6498 -2.0425 -3.8447 12 6 6.8839 -3.1117 -3.1895 13 6 7.8554 -4.1560 -2.6425 14 6 8.7706 -4.6385 -3.7702 15 6 9.5813 -3.4586 -4.3113 16 1 10.1672 -3.0191 -3.5040 17 6 10.5062 -3.9399 -5.3995 18 1 10.5169 -4.9838 -5.6765 19 6 11.3384 -3.0477 -6.0416 20 7 11.3256 -1.7767 -5.7041 21 14 12.4842 -3.6442 -7.3910 22 1 12.3083 -5.1067 -7.5792 23 1 12.1652 -2.9396 -8.6586 24 1 13.8905 -3.3607 -7.0074 25 6 8.6255 -2.4058 -4.8813 26 6 5.9334 0.9936 0.3990 27 16 4.4886 1.1083 1.4010 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8462 -0.8901 32 1 1.6886 1.8463 0.8899 33 1 6.1701 1.5671 -2.8494 34 1 7.5015 1.3051 -1.6974 35 1 6.1269 -1.1382 -2.0388 36 1 6.2998 -2.6933 -2.3698 37 1 6.2176 -3.5804 -3.9137 38 1 7.2953 -5.0010 -2.2419 39 1 8.4575 -3.7105 -1.8507 40 1 8.1661 -5.0620 -4.5724 41 1 9.4494 -5.3999 -3.3864 42 1 11.9108 -1.1489 -6.1560 43 1 8.1041 -2.8157 -5.7463 44 1 9.1884 -1.5213 -5.1792 45 1 6.9495 0.9133 0.7561 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595637456.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:28 Heat of formation + Delta-G solvation = -20.446427 kcal Electronic energy + Delta-G solvation = -26935.824856 eV Core-core repulsion = 23080.781317 eV Total energy + Delta-G solvation = -3855.043538 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.40670 -39.48254 -38.22218 -36.82417 -34.47104 -33.28522 -31.92986 -31.44223 -29.71043 -28.63550 -27.04061 -26.38683 -25.00724 -24.12549 -22.73834 -21.75822 -20.13535 -20.05032 -18.91897 -18.16453 -17.36620 -17.02474 -16.31700 -16.17038 -16.06431 -15.79536 -14.84427 -14.68609 -14.58501 -14.34832 -13.92847 -13.68542 -13.46738 -13.38419 -13.24359 -12.72777 -12.61250 -12.56011 -12.50391 -12.01802 -11.91909 -11.86037 -11.52266 -10.96087 -10.86151 -10.44264 -10.34744 -10.26141 -10.18649 -9.94541 -9.83398 -9.74216 -9.50771 -9.14688 -9.05691 -8.88519 -8.70044 -8.37860 -7.58011 -5.94359 -4.03116 0.28472 0.99498 1.37378 2.24836 3.27144 3.33036 3.41685 3.44169 3.45623 3.88423 3.93309 4.44213 4.44559 4.53209 4.70394 4.83491 4.88529 4.92534 4.97032 5.06066 5.25174 5.34238 5.36104 5.52132 5.56321 5.68599 5.79145 5.90805 6.04171 6.21259 6.36408 6.55860 6.63450 6.71269 6.81366 6.85934 7.03463 7.12031 7.40166 7.43803 7.55725 7.79776 7.97966 8.11412 8.45758 8.64132 9.00694 9.30646 9.62299 11.10845 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020473 B = 0.002322 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.296412 B =12056.619785 C =12541.066403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.141 3.859 4 C 0.036 3.964 5 N -0.439 5.439 6 C 0.053 3.947 7 C 0.217 3.783 8 N -0.752 5.752 9 C 0.704 3.296 10 O -0.583 6.583 11 N -0.621 5.621 12 C 0.116 3.884 13 C -0.133 4.133 14 C -0.110 4.110 15 C 0.039 3.961 16 H 0.028 0.972 17 C -0.520 4.520 18 H 0.058 0.942 19 C 0.062 3.938 20 N -0.879 5.879 21 Si 0.891 3.109 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.285 1.285 25 C 0.129 3.871 26 C -0.229 4.229 27 S 0.146 5.854 28 H 0.091 0.909 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.392 0.608 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.049 0.951 41 H 0.050 0.950 42 H 0.263 0.737 43 H 0.039 0.961 44 H 0.123 0.877 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.503 5.757 17.195 27.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.061 3.939 4 C -0.242 4.242 5 N -0.155 5.155 6 C -0.080 4.080 7 C 0.090 3.910 8 N -0.412 5.412 9 C 0.405 3.595 10 O -0.461 6.461 11 N -0.358 5.358 12 C -0.008 4.008 13 C -0.172 4.172 14 C -0.147 4.147 15 C 0.020 3.980 16 H 0.046 0.954 17 C -0.558 4.558 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.517 5.517 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.211 1.211 25 C 0.009 3.991 26 C -0.370 4.370 27 S 0.401 5.599 28 H 0.109 0.891 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.228 0.772 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.141 0.859 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -20.337 6.456 17.247 27.436 hybrid contribution 0.739 -0.494 -1.102 1.416 sum -19.598 5.961 16.145 26.082 Atomic orbital electron populations 1.22810 0.79939 1.03408 1.00311 1.87968 1.20336 1.26261 1.95509 1.20766 0.84560 0.86108 1.02435 1.26515 1.00282 1.05983 0.91461 1.66062 1.04570 1.13285 1.31578 1.20353 0.90024 1.03240 0.94369 1.19443 0.95193 0.84092 0.92265 1.45247 1.49328 1.08687 1.37950 1.15867 0.79779 0.83679 0.80161 1.90920 1.52983 1.46587 1.55579 1.47763 1.43069 1.02921 1.42012 1.21398 0.93823 0.89515 0.96083 1.21872 0.98252 0.97565 0.99469 1.21612 0.97407 0.99743 0.95963 1.18995 0.92315 0.90511 0.96187 0.95385 1.21112 1.20721 0.94626 1.19391 0.92340 1.25060 0.96968 0.94958 0.97093 1.69900 1.38372 1.02000 1.41398 0.86548 0.80702 0.78836 0.81987 1.19827 1.20972 1.21070 1.22184 0.87595 1.02983 0.86349 1.27131 1.03872 1.10149 0.95826 1.83932 0.97646 1.66281 1.12030 0.89057 0.93744 0.93524 0.89965 0.90894 0.89984 0.89971 0.77215 0.92290 0.92146 0.92356 0.92246 0.93182 0.93083 0.92725 0.94283 0.85930 0.79798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.58 10.69 -35.23 -0.38 -3.95 16 3 C 0.14 1.12 6.51 36.00 0.23 1.35 16 4 C 0.04 0.37 7.02 -13.46 -0.09 0.28 16 5 N -0.44 -5.65 10.53 -8.06 -0.08 -5.73 16 6 C 0.05 0.65 6.11 -84.22 -0.51 0.14 16 7 C 0.22 3.16 6.12 -5.20 -0.03 3.13 16 8 N -0.75 -12.40 5.46 -66.42 -0.36 -12.77 16 9 C 0.70 15.08 8.30 -86.92 -0.72 14.36 16 10 O -0.58 -15.04 15.78 5.29 0.08 -14.96 16 11 N -0.62 -13.11 2.98 -178.76 -0.53 -13.64 16 12 C 0.12 1.92 6.40 -3.93 -0.03 1.89 16 13 C -0.13 -2.21 6.06 -26.83 -0.16 -2.38 16 14 C -0.11 -2.22 5.11 -26.69 -0.14 -2.36 16 15 C 0.04 0.99 2.25 -91.65 -0.21 0.78 16 16 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 17 C -0.52 -14.28 8.57 -34.44 -0.29 -14.58 16 18 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 19 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 20 N -0.88 -26.06 11.39 55.43 0.63 -25.43 16 21 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 C 0.13 3.25 5.39 -3.71 -0.02 3.23 16 26 C -0.23 -2.27 11.11 29.12 0.32 -1.94 16 27 S 0.15 1.22 23.18 -107.50 -2.49 -1.27 16 28 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 35 H 0.39 5.73 5.92 -40.82 -0.24 5.49 16 36 H 0.06 0.82 5.57 -51.93 -0.29 0.53 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.12 3.59 5.15 -51.93 -0.27 3.32 16 45 H 0.18 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 380.83 15.07 5.74 5.74 Total: -1.00 -34.35 380.83 -9.73 -44.07 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -6.68 Total: 4.57 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -0.63 Total: 6.84 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: -0.35 Total: -57.57 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.29 Total: -18.91 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.49 Total: -1.27 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.35 -9.73 -44.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595637456.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.627 kcal (2) G-P(sol) polarization free energy of solvation -34.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds