Wall clock time and date at job start Sat Apr 11 2020 05:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42891 * 114.00146 * 2 1 4 4 C 1.50697 * 109.47364 * 180.02562 * 3 2 1 5 5 N 1.29028 * 124.91863 * 89.71736 * 4 3 2 6 6 C 1.31791 * 117.12459 * 179.81981 * 5 4 3 7 7 C 1.50699 * 122.74814 * 180.22484 * 6 5 4 8 8 N 1.46495 * 109.47071 * 275.26547 * 7 6 5 9 9 C 1.34778 * 120.00208 * 180.02562 * 8 7 6 10 10 O 1.21584 * 119.99603 * 354.92142 * 9 8 7 11 11 N 1.34775 * 120.00653 * 174.91883 * 9 8 7 12 12 C 1.46933 * 120.62532 * 4.74295 * 11 9 8 13 13 C 1.52758 * 109.00692 * 233.58534 * 12 11 9 14 14 C 1.53042 * 109.38519 * 305.58431 * 13 12 11 15 15 C 1.53042 * 109.53082 * 61.24236 * 14 13 12 16 16 H 1.09002 * 109.49845 * 58.58945 * 15 14 13 17 17 C 1.50703 * 109.52179 * 178.66651 * 15 14 13 18 18 H 1.08005 * 119.99952 * 359.85778 * 17 15 14 19 19 C 1.37875 * 120.00036 * 179.85432 * 17 15 14 20 20 N 1.31512 * 120.00382 * 0.02562 * 19 17 15 21 21 Si 1.86806 * 119.99898 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47283 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47031 * 120.00268 * 21 19 17 24 24 H 1.48501 * 109.46848 * 240.00145 * 21 19 17 25 25 C 1.46925 * 120.63497 * 185.02358 * 11 9 8 26 26 C 1.33633 * 114.49860 * 0.46784 * 6 5 4 27 27 S 1.70979 * 124.91528 * 270.02422 * 4 3 2 28 28 H 1.09000 * 109.47236 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47202 * 300.00662 * 1 2 3 30 30 H 1.08996 * 109.46995 * 60.00248 * 1 2 3 31 31 H 1.09002 * 109.46896 * 299.99371 * 3 2 1 32 32 H 1.08997 * 109.47503 * 59.99892 * 3 2 1 33 33 H 1.09004 * 109.47382 * 35.26398 * 7 6 5 34 34 H 1.08997 * 109.47280 * 155.26298 * 7 6 5 35 35 H 0.97003 * 120.00189 * 359.97438 * 8 7 6 36 36 H 1.09002 * 109.58956 * 353.41920 * 12 11 9 37 37 H 1.09000 * 109.58793 * 113.84177 * 12 11 9 38 38 H 1.09001 * 109.56298 * 185.55324 * 13 12 11 39 39 H 1.08994 * 109.38932 * 65.51535 * 13 12 11 40 40 H 1.09003 * 109.45993 * 301.22846 * 14 13 12 41 41 H 1.08992 * 109.46132 * 181.25868 * 14 13 12 42 42 H 0.96994 * 120.00664 * 180.02562 * 20 19 17 43 43 H 1.09001 * 109.58445 * 246.15670 * 25 11 9 44 44 H 1.08997 * 109.58359 * 6.43956 * 25 11 9 45 45 H 1.08001 * 126.03704 * 179.79696 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2479 1.1231 -1.0589 6 6 5.5500 1.0245 -0.8808 7 6 6.5260 0.9472 -2.0264 8 7 6.6418 -0.4422 -2.4762 9 6 7.4646 -0.7536 -3.4973 10 8 8.0400 0.1285 -4.1050 11 7 7.6498 -2.0425 -3.8447 12 6 6.8839 -3.1117 -3.1895 13 6 7.8554 -4.1560 -2.6425 14 6 8.7706 -4.6385 -3.7702 15 6 9.5813 -3.4586 -4.3113 16 1 10.1672 -3.0191 -3.5040 17 6 10.5062 -3.9399 -5.3995 18 1 10.5169 -4.9838 -5.6765 19 6 11.3384 -3.0477 -6.0416 20 7 11.3256 -1.7767 -5.7041 21 14 12.4842 -3.6442 -7.3910 22 1 12.3083 -5.1067 -7.5792 23 1 12.1652 -2.9396 -8.6586 24 1 13.8905 -3.3607 -7.0074 25 6 8.6255 -2.4058 -4.8813 26 6 5.9334 0.9936 0.3990 27 16 4.4886 1.1083 1.4010 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8462 -0.8901 32 1 1.6886 1.8463 0.8899 33 1 6.1701 1.5671 -2.8494 34 1 7.5015 1.3051 -1.6974 35 1 6.1269 -1.1382 -2.0388 36 1 6.2998 -2.6933 -2.3698 37 1 6.2176 -3.5804 -3.9137 38 1 7.2953 -5.0010 -2.2419 39 1 8.4575 -3.7105 -1.8507 40 1 8.1661 -5.0620 -4.5724 41 1 9.4494 -5.3999 -3.3864 42 1 11.9108 -1.1489 -6.1560 43 1 8.1041 -2.8157 -5.7463 44 1 9.1884 -1.5213 -5.1792 45 1 6.9495 0.9133 0.7561 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595637456.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:28 Heat of formation + Delta-G solvation = -45.115624 kcal Electronic energy + Delta-G solvation = -26936.894592 eV Core-core repulsion = 23080.781317 eV Total energy + Delta-G solvation = -3856.113275 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.52275 -40.85492 -38.83307 -38.48274 -35.94955 -35.17542 -33.51076 -32.53241 -31.49711 -29.36312 -28.20976 -26.98864 -26.86879 -25.70354 -23.66545 -23.39800 -21.75310 -20.98554 -20.42253 -19.39843 -18.71122 -18.14926 -17.61310 -17.30693 -16.99044 -16.64444 -16.59544 -16.32087 -15.69440 -15.52223 -15.21840 -15.10085 -14.79035 -14.65465 -14.37899 -14.32005 -14.10253 -13.69793 -13.56203 -13.42205 -13.13078 -12.90230 -12.65714 -12.44545 -12.36640 -12.27523 -12.20156 -11.86950 -11.63577 -11.27729 -10.96669 -10.84313 -10.82190 -10.66626 -10.51345 -10.49325 -10.23300 -9.94819 -9.28317 -8.08928 -6.25986 -0.46783 0.28616 0.60758 1.28812 1.41038 1.42372 1.54419 2.00460 2.22400 2.43293 2.65633 3.05357 3.20543 3.22522 3.73920 3.97025 4.02240 4.15174 4.17085 4.23846 4.27249 4.39550 4.50199 4.53651 4.59004 4.59255 4.70294 4.72688 4.80623 4.84772 4.90013 4.94777 5.10408 5.26309 5.27379 5.32198 5.42982 5.57836 5.63517 5.88320 5.97131 6.07766 6.13938 6.36880 6.65654 6.87085 7.07551 7.43842 7.63543 8.94755 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020473 B = 0.002322 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.296412 B =12056.619785 C =12541.066403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.138 3.862 4 C 0.019 3.981 5 N -0.475 5.475 6 C 0.033 3.967 7 C 0.219 3.781 8 N -0.730 5.730 9 C 0.697 3.303 10 O -0.637 6.637 11 N -0.626 5.626 12 C 0.111 3.889 13 C -0.124 4.124 14 C -0.104 4.104 15 C 0.039 3.961 16 H -0.012 1.012 17 C -0.534 4.534 18 H 0.063 0.937 19 C 0.008 3.992 20 N -0.915 5.915 21 Si 0.958 3.042 22 H -0.260 1.260 23 H -0.284 1.284 24 H -0.282 1.282 25 C 0.143 3.857 26 C -0.229 4.229 27 S 0.219 5.781 28 H 0.096 0.904 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.404 0.596 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.259 0.741 43 H 0.032 0.968 44 H 0.076 0.924 45 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.505 4.323 19.513 30.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C 0.059 3.941 4 C -0.259 4.259 5 N -0.192 5.192 6 C -0.099 4.099 7 C 0.093 3.907 8 N -0.390 5.390 9 C 0.399 3.601 10 O -0.518 6.518 11 N -0.362 5.362 12 C -0.011 4.011 13 C -0.162 4.162 14 C -0.142 4.142 15 C 0.020 3.980 16 H 0.006 0.994 17 C -0.572 4.572 18 H 0.081 0.919 19 C -0.191 4.191 20 N -0.554 5.554 21 Si 0.784 3.216 22 H -0.184 1.184 23 H -0.210 1.210 24 H -0.208 1.208 25 C 0.020 3.980 26 C -0.369 4.369 27 S 0.474 5.526 28 H 0.115 0.885 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.122 0.878 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.242 0.758 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.122 0.878 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.050 0.950 44 H 0.095 0.905 45 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -22.405 4.984 19.626 30.199 hybrid contribution 1.279 -0.023 -1.709 2.135 sum -21.126 4.961 17.916 28.141 Atomic orbital electron populations 1.22993 0.78246 1.04206 1.01523 1.87910 1.22271 1.27069 1.95766 1.20957 0.83232 0.86009 1.03945 1.26982 1.01538 1.05353 0.92036 1.66015 1.04923 1.14859 1.33423 1.19927 0.89789 1.06000 0.94191 1.19398 0.96123 0.82414 0.92785 1.45043 1.47749 1.10037 1.36137 1.16091 0.80025 0.83258 0.80744 1.90878 1.55189 1.48189 1.57541 1.47668 1.42770 1.04108 1.41610 1.21734 0.93758 0.88418 0.97229 1.21821 0.97761 0.98911 0.97705 1.21503 0.97652 0.97588 0.97466 1.18919 0.92379 0.92271 0.94478 0.99414 1.21544 1.21085 0.94803 1.19794 0.91884 1.25917 0.98739 0.94962 0.99511 1.70099 1.39250 1.03274 1.42775 0.85501 0.78435 0.78885 0.78814 1.18371 1.20961 1.20813 1.21616 0.88075 1.00899 0.87372 1.27407 1.05756 1.08210 0.95567 1.83680 0.95148 1.64250 1.09529 0.88543 0.91741 0.93100 0.90058 0.87798 0.91951 0.89930 0.75788 0.89049 0.90515 0.87798 0.92939 0.92492 0.92727 0.93156 0.94954 0.90538 0.78066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.48 16 2 O -0.41 -6.90 10.69 -148.98 -1.59 -8.49 16 3 C 0.14 1.91 6.51 71.23 0.46 2.38 16 4 C 0.02 0.35 7.02 88.52 0.62 0.97 16 5 N -0.48 -11.87 10.53 -179.40 -1.89 -13.75 16 6 C 0.03 0.80 6.11 41.52 0.25 1.05 16 7 C 0.22 6.54 6.12 85.63 0.52 7.06 16 8 N -0.73 -24.13 5.46 -482.31 -2.63 -26.76 16 9 C 0.70 30.84 8.30 179.05 1.49 32.32 16 10 O -0.64 -34.81 15.78 -3.98 -0.06 -34.87 16 11 N -0.63 -26.76 2.98 -837.74 -2.50 -29.26 16 12 C 0.11 3.42 6.40 86.22 0.55 3.97 16 13 C -0.12 -3.77 6.06 30.53 0.19 -3.58 16 14 C -0.10 -4.11 5.11 30.62 0.16 -3.95 16 15 C 0.04 2.01 2.25 -11.46 -0.03 1.98 16 16 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 17 C -0.53 -29.91 8.57 25.60 0.22 -29.69 16 18 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 19 C 0.01 0.46 5.30 84.65 0.45 0.91 16 20 N -0.92 -56.87 11.39 21.45 0.24 -56.63 16 21 Si 0.96 45.10 29.54 68.60 2.03 47.13 16 22 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 23 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 24 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 25 C 0.14 7.47 5.39 86.36 0.47 7.94 16 26 C -0.23 -4.05 11.11 66.77 0.74 -3.31 16 27 S 0.22 3.00 23.18 -56.49 -1.31 1.69 16 28 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 34 H 0.08 2.42 8.10 -2.39 -0.02 2.40 16 35 H 0.40 11.22 5.92 -92.71 -0.55 10.68 16 36 H 0.09 2.23 5.57 -2.39 -0.01 2.22 16 37 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 43 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.08 4.77 5.15 -2.39 -0.01 4.75 16 45 H 0.20 2.72 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -79.95 380.83 0.09 -79.87 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 0.46 Total: 21.55 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: 7.34 Total: 19.53 kcal Atomic # 7 Polarization: -119.63 SS G_CDS: -6.77 Total: -126.41 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -1.65 Total: -43.36 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -1.31 Total: 1.69 kcal Total: -79.95 0.09 -79.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595637456.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.751 kcal (2) G-P(sol) polarization free energy of solvation -79.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds