Wall clock time and date at job start Sat Apr 11 2020 05:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39631 * 120.15359 * 36.91551 * 3 2 1 5 5 C 1.37942 * 119.84702 * 180.02562 * 4 3 2 6 6 C 1.38365 * 120.15328 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.84874 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47165 * 89.99942 * 7 6 5 9 9 N 1.46501 * 109.46819 * 180.02562 * 8 7 6 10 10 C 1.34780 * 119.99982 * 179.97438 * 9 8 7 11 11 O 1.21591 * 119.99638 * 359.97438 * 10 9 8 12 12 N 1.34768 * 120.00283 * 180.02562 * 10 9 8 13 13 C 1.40196 * 120.00423 * 180.02562 * 12 10 9 14 14 C 1.40405 * 125.97001 * 0.02562 * 13 12 10 15 15 C 1.35238 * 107.87064 * 179.74102 * 14 13 12 16 16 N 1.34966 * 107.85507 * 0.36692 * 15 14 13 17 17 C 1.46500 * 125.97782 * 179.89559 * 16 15 14 18 18 C 1.50706 * 109.47299 * 124.71059 * 17 16 15 19 19 H 1.07998 * 119.99503 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00434 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99826 * 359.72891 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72576 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72423 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72459 * 22 20 18 26 26 N 1.31207 * 125.97824 * 179.97438 * 13 12 10 27 27 C 1.38359 * 120.30157 * 0.23272 * 6 5 4 28 28 C 1.37948 * 120.15427 * 359.48404 * 27 6 5 29 29 H 1.08003 * 120.07628 * 0.02562 * 4 3 2 30 30 H 1.08009 * 119.92442 * 180.02562 * 5 4 3 31 31 H 1.09000 * 109.46802 * 330.00080 * 7 6 5 32 32 H 1.09001 * 109.46896 * 210.00174 * 7 6 5 33 33 H 1.08997 * 109.47299 * 59.99842 * 8 7 6 34 34 H 1.09001 * 109.47072 * 299.99489 * 8 7 6 35 35 H 0.96994 * 119.99979 * 0.02562 * 9 8 7 36 36 H 0.97000 * 119.99831 * 359.97438 * 12 10 9 37 37 H 1.08004 * 126.06253 * 359.96901 * 14 13 12 38 38 H 1.07999 * 126.07487 * 180.25848 * 15 14 13 39 39 H 1.09004 * 109.47078 * 4.71821 * 17 16 15 40 40 H 1.08993 * 109.47364 * 244.71592 * 17 16 15 41 41 H 0.97000 * 120.00236 * 0.27947 * 21 20 18 42 42 H 1.08003 * 119.92156 * 179.72899 * 27 6 5 43 43 H 1.07996 * 120.07742 * 180.25777 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2698 -0.9644 -0.7252 5 6 4.6492 -0.9582 -0.7203 6 6 5.3374 0.0010 0.0014 7 6 6.8445 0.0010 0.0023 8 6 7.3552 0.8680 -1.1503 9 7 8.8202 0.8674 -1.1496 10 6 9.4948 1.5684 -2.0825 11 8 8.8873 2.2008 -2.9248 12 7 10.8424 1.5675 -2.0822 13 6 11.5441 2.2971 -3.0522 14 6 10.9731 3.0690 -4.0767 15 6 11.9802 3.6158 -4.7947 16 7 13.1458 3.2021 -4.2545 17 6 14.4868 3.5573 -4.7255 18 6 15.2746 4.1597 -3.5908 19 1 14.8218 4.2669 -2.6162 20 6 16.5733 4.5741 -3.7968 21 7 17.1265 4.4387 -4.9823 22 14 17.5501 5.3202 -2.3901 23 1 17.3517 6.7918 -2.3758 24 1 17.0827 4.7451 -1.1033 25 1 18.9922 5.0169 -2.5732 26 7 12.8491 2.3788 -3.1608 27 6 4.6483 0.9569 0.7264 28 6 3.2689 0.9660 0.7257 29 1 2.7339 -1.7139 -1.2886 30 1 5.1934 -1.7038 -1.2812 31 1 7.2078 -1.0191 -0.1216 32 1 7.2071 0.4035 0.9481 33 1 6.9918 1.8881 -1.0263 34 1 6.9925 0.4654 -2.0960 35 1 9.3047 0.3620 -0.4783 36 1 11.3270 1.0627 -1.4105 37 1 9.9169 3.2051 -4.2568 38 1 11.8712 4.2665 -5.6498 39 1 14.4071 4.2809 -5.5368 40 1 14.9944 2.6624 -5.0854 41 1 16.6195 4.0511 -5.7127 42 1 5.1917 1.7001 1.2911 43 1 2.7322 1.7152 1.2888 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596753365.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:32 Heat of formation + Delta-G solvation = 103.373057 kcal Electronic energy + Delta-G solvation = -26080.467057 eV Core-core repulsion = 22127.641535 eV Total energy + Delta-G solvation = -3952.825523 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.81907 -40.23621 -39.58875 -37.15047 -35.87306 -34.75523 -33.73214 -33.13740 -31.69891 -30.87811 -29.42386 -29.16754 -26.28547 -24.84686 -23.39665 -23.11339 -22.22426 -21.70465 -20.58079 -19.90689 -19.49209 -18.09966 -17.18174 -16.87881 -16.48693 -16.26186 -15.71203 -15.52392 -15.08988 -14.77105 -14.62268 -14.43579 -14.38748 -14.11097 -13.90859 -13.78472 -13.42687 -13.27311 -13.18306 -13.08087 -12.45246 -12.29238 -12.17866 -12.02904 -11.97689 -11.81826 -11.54109 -11.15885 -10.81682 -10.47070 -10.18773 -10.16769 -9.76051 -9.63941 -9.35824 -9.34994 -8.98804 -8.58184 -8.18963 -7.48422 -6.58373 -4.32438 0.15601 0.74009 2.17206 2.24226 2.43777 2.57733 3.03178 3.28906 3.34896 3.36166 3.40026 3.48096 3.57526 3.76286 4.10449 4.15958 4.28234 4.34381 4.40798 4.51613 4.58538 4.71553 4.91397 4.99319 5.15362 5.20328 5.32906 5.39876 5.45812 5.57823 5.59815 5.70003 5.70918 5.93585 6.10356 6.18977 6.20620 6.41482 6.45924 6.64204 6.76429 6.93870 6.97973 7.40918 7.62389 7.84422 7.87306 8.34798 8.51273 8.55738 8.63087 9.35904 10.79190 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031035 B = 0.001467 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.994158 B =19088.048283 C =19416.367316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C 0.254 3.746 3 C -0.033 4.033 4 C -0.067 4.067 5 C -0.113 4.113 6 C -0.049 4.049 7 C -0.099 4.099 8 C 0.145 3.855 9 N -0.746 5.746 10 C 0.713 3.287 11 O -0.566 6.566 12 N -0.643 5.643 13 C 0.277 3.723 14 C -0.284 4.284 15 C 0.050 3.950 16 N -0.319 5.319 17 C 0.249 3.751 18 C -0.608 4.608 19 H 0.064 0.936 20 C 0.023 3.977 21 N -0.906 5.906 22 Si 1.079 2.921 23 H -0.286 1.286 24 H -0.287 1.287 25 H -0.282 1.282 26 N -0.305 5.305 27 C -0.113 4.113 28 C -0.067 4.067 29 H 0.134 0.866 30 H 0.136 0.864 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.398 0.602 36 H 0.407 0.593 37 H 0.162 0.838 38 H 0.167 0.833 39 H 0.046 0.954 40 H 0.034 0.966 41 H 0.267 0.733 42 H 0.136 0.864 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.925 -11.499 11.662 28.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.093 5.093 2 C -0.062 4.062 3 C -0.037 4.037 4 C -0.088 4.088 5 C -0.131 4.131 6 C -0.050 4.050 7 C -0.136 4.136 8 C 0.021 3.979 9 N -0.403 5.403 10 C 0.412 3.588 11 O -0.441 6.441 12 N -0.293 5.293 13 C 0.023 3.977 14 C -0.315 4.315 15 C -0.099 4.099 16 N -0.101 5.101 17 C 0.131 3.869 18 C -0.646 4.646 19 H 0.082 0.918 20 C -0.182 4.182 21 N -0.541 5.541 22 Si 0.907 3.093 23 H -0.212 1.212 24 H -0.213 1.213 25 H -0.207 1.207 26 N -0.136 5.136 27 C -0.131 4.131 28 C -0.088 4.088 29 H 0.151 0.849 30 H 0.154 0.846 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.232 0.768 36 H 0.242 0.758 37 H 0.180 0.820 38 H 0.185 0.815 39 H 0.064 0.936 40 H 0.052 0.948 41 H 0.078 0.922 42 H 0.154 0.846 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -23.560 -10.609 11.703 28.365 hybrid contribution -1.354 -0.875 -0.114 1.616 sum -24.914 -11.484 11.589 29.781 Atomic orbital electron populations 1.81283 1.12122 1.07723 1.08185 1.25756 0.92716 0.93861 0.93822 1.16027 0.84277 0.99851 1.03523 1.21192 0.94291 0.96731 0.96566 1.21055 0.93505 0.99195 0.99373 1.19922 0.95249 0.94471 0.95370 1.20893 0.91110 1.01830 0.99800 1.21145 0.78031 1.00465 0.98271 1.44986 1.07035 1.54439 1.33855 1.15599 0.80781 0.80315 0.82074 1.90880 1.67440 1.46602 1.39216 1.41370 1.04418 1.51480 1.32060 1.18782 0.90329 0.96729 0.91908 1.21525 1.00853 1.08638 1.00503 1.22558 0.85783 1.01086 1.00510 1.48756 1.07198 1.34132 1.19968 1.19751 0.74815 0.96084 0.96234 1.22138 1.00401 1.44712 0.97338 0.91801 1.25917 0.95222 0.95428 1.01615 1.70821 1.39916 1.41749 1.01640 0.83383 0.75827 0.76188 0.73950 1.21220 1.21267 1.20727 1.77339 1.10972 1.17354 1.07922 1.21061 0.93503 0.98816 0.99730 1.21197 0.94301 0.96605 0.96656 0.84850 0.84616 0.89563 0.89541 0.91012 0.91039 0.76848 0.75818 0.82033 0.81547 0.93634 0.94807 0.92238 0.84596 0.84839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.27 18.54 41.84 0.78 -3.50 16 2 C 0.25 1.92 15.33 -22.47 -0.34 1.58 16 3 C -0.03 -0.18 5.73 -106.93 -0.61 -0.79 16 4 C -0.07 -0.28 9.76 -39.17 -0.38 -0.66 16 5 C -0.11 -0.41 9.68 -39.64 -0.38 -0.79 16 6 C -0.05 -0.18 5.14 -104.53 -0.54 -0.72 16 7 C -0.10 -0.30 5.45 -27.88 -0.15 -0.45 16 8 C 0.15 0.92 5.66 -4.04 -0.02 0.90 16 9 N -0.75 -5.92 5.56 -65.23 -0.36 -6.28 16 10 C 0.71 9.58 8.53 -86.92 -0.74 8.84 16 11 O -0.57 -9.68 13.47 5.29 0.07 -9.60 16 12 N -0.64 -9.40 5.45 -15.51 -0.08 -9.49 16 13 C 0.28 5.45 8.11 -154.36 -1.25 4.20 16 14 C -0.28 -5.58 9.61 -39.83 -0.38 -5.96 16 15 C 0.05 1.00 11.44 -17.24 -0.20 0.80 16 16 N -0.32 -7.39 3.67 -62.56 -0.23 -7.62 16 17 C 0.25 6.26 5.57 -5.19 -0.03 6.24 16 18 C -0.61 -16.96 9.24 -34.44 -0.32 -17.28 16 19 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 20 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 21 N -0.91 -26.19 13.65 55.43 0.76 -25.43 16 22 Si 1.08 24.71 29.90 -169.99 -5.08 19.63 16 23 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 24 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 26 N -0.30 -6.96 12.42 31.44 0.39 -6.57 16 27 C -0.11 -0.41 9.68 -39.64 -0.38 -0.80 16 28 C -0.07 -0.28 9.76 -39.17 -0.38 -0.66 16 29 H 0.13 0.37 8.06 -52.48 -0.42 -0.05 16 30 H 0.14 0.28 8.06 -52.48 -0.42 -0.14 16 31 H 0.09 0.17 8.08 -51.93 -0.42 -0.25 16 32 H 0.09 0.18 8.08 -51.93 -0.42 -0.24 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.40 1.90 8.49 -40.82 -0.35 1.55 16 36 H 0.41 4.66 8.84 -40.82 -0.36 4.30 16 37 H 0.16 3.10 5.91 -52.48 -0.31 2.79 16 38 H 0.17 2.69 8.06 -52.49 -0.42 2.27 16 39 H 0.05 1.11 7.94 -51.93 -0.41 0.69 16 40 H 0.03 0.88 8.00 -51.93 -0.42 0.47 16 41 H 0.27 7.56 7.22 -40.82 -0.29 7.27 16 42 H 0.14 0.30 8.06 -52.48 -0.42 -0.12 16 43 H 0.13 0.39 8.06 -52.49 -0.42 -0.04 16 LS Contribution 385.06 15.07 5.80 5.80 Total: -1.00 -36.38 385.06 -9.33 -45.71 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -5.14 Total: 2.37 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -6.22 Total: -5.03 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: 1.25 Total: -58.87 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.07 Total: -9.60 kcal Atomic # 14 Polarization: 24.71 SS G_CDS: -5.08 Total: 19.63 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.38 -9.33 -45.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596753365.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.079 kcal (2) G-P(sol) polarization free energy of solvation -36.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds