Wall clock time and date at job start Sat Apr 11 2020 05:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39631 * 120.15359 * 36.91551 * 3 2 1 5 5 C 1.37942 * 119.84702 * 180.02562 * 4 3 2 6 6 C 1.38365 * 120.15328 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.84874 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47165 * 89.99942 * 7 6 5 9 9 N 1.46501 * 109.46819 * 180.02562 * 8 7 6 10 10 C 1.34780 * 119.99982 * 179.97438 * 9 8 7 11 11 O 1.21591 * 119.99638 * 359.97438 * 10 9 8 12 12 N 1.34768 * 120.00283 * 180.02562 * 10 9 8 13 13 C 1.40196 * 120.00423 * 180.02562 * 12 10 9 14 14 C 1.40405 * 125.97001 * 0.02562 * 13 12 10 15 15 C 1.35238 * 107.87064 * 179.74102 * 14 13 12 16 16 N 1.34966 * 107.85507 * 0.36692 * 15 14 13 17 17 C 1.46500 * 125.97782 * 179.89559 * 16 15 14 18 18 C 1.50706 * 109.47299 * 124.71059 * 17 16 15 19 19 H 1.07998 * 119.99503 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00434 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99826 * 359.72891 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72576 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72423 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72459 * 22 20 18 26 26 N 1.31207 * 125.97824 * 179.97438 * 13 12 10 27 27 C 1.38359 * 120.30157 * 0.23272 * 6 5 4 28 28 C 1.37948 * 120.15427 * 359.48404 * 27 6 5 29 29 H 1.08003 * 120.07628 * 0.02562 * 4 3 2 30 30 H 1.08009 * 119.92442 * 180.02562 * 5 4 3 31 31 H 1.09000 * 109.46802 * 330.00080 * 7 6 5 32 32 H 1.09001 * 109.46896 * 210.00174 * 7 6 5 33 33 H 1.08997 * 109.47299 * 59.99842 * 8 7 6 34 34 H 1.09001 * 109.47072 * 299.99489 * 8 7 6 35 35 H 0.96994 * 119.99979 * 0.02562 * 9 8 7 36 36 H 0.97000 * 119.99831 * 359.97438 * 12 10 9 37 37 H 1.08004 * 126.06253 * 359.96901 * 14 13 12 38 38 H 1.07999 * 126.07487 * 180.25848 * 15 14 13 39 39 H 1.09004 * 109.47078 * 4.71821 * 17 16 15 40 40 H 1.08993 * 109.47364 * 244.71592 * 17 16 15 41 41 H 0.97000 * 120.00236 * 0.27947 * 21 20 18 42 42 H 1.08003 * 119.92156 * 179.72899 * 27 6 5 43 43 H 1.07996 * 120.07742 * 180.25777 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2698 -0.9644 -0.7252 5 6 4.6492 -0.9582 -0.7203 6 6 5.3374 0.0010 0.0014 7 6 6.8445 0.0010 0.0023 8 6 7.3552 0.8680 -1.1503 9 7 8.8202 0.8674 -1.1496 10 6 9.4948 1.5684 -2.0825 11 8 8.8873 2.2008 -2.9248 12 7 10.8424 1.5675 -2.0822 13 6 11.5441 2.2971 -3.0522 14 6 10.9731 3.0690 -4.0767 15 6 11.9802 3.6158 -4.7947 16 7 13.1458 3.2021 -4.2545 17 6 14.4868 3.5573 -4.7255 18 6 15.2746 4.1597 -3.5908 19 1 14.8218 4.2669 -2.6162 20 6 16.5733 4.5741 -3.7968 21 7 17.1265 4.4387 -4.9823 22 14 17.5501 5.3202 -2.3901 23 1 17.3517 6.7918 -2.3758 24 1 17.0827 4.7451 -1.1033 25 1 18.9922 5.0169 -2.5732 26 7 12.8491 2.3788 -3.1608 27 6 4.6483 0.9569 0.7264 28 6 3.2689 0.9660 0.7257 29 1 2.7339 -1.7139 -1.2886 30 1 5.1934 -1.7038 -1.2812 31 1 7.2078 -1.0191 -0.1216 32 1 7.2071 0.4035 0.9481 33 1 6.9918 1.8881 -1.0263 34 1 6.9925 0.4654 -2.0960 35 1 9.3047 0.3620 -0.4783 36 1 11.3270 1.0627 -1.4105 37 1 9.9169 3.2051 -4.2568 38 1 11.8712 4.2665 -5.6498 39 1 14.4071 4.2809 -5.5368 40 1 14.9944 2.6624 -5.0854 41 1 16.6195 4.0511 -5.7127 42 1 5.1917 1.7001 1.2911 43 1 2.7322 1.7152 1.2888 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596753365.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:31 Heat of formation + Delta-G solvation = 80.445379 kcal Electronic energy + Delta-G solvation = -26081.461276 eV Core-core repulsion = 22127.641535 eV Total energy + Delta-G solvation = -3953.819741 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.25619 -40.94307 -40.42568 -37.76655 -36.71870 -36.14138 -35.48374 -33.81033 -32.51233 -31.97493 -30.98083 -29.81097 -28.07516 -25.63389 -24.85468 -23.67553 -23.05070 -22.50041 -22.08725 -21.23802 -19.87080 -19.26865 -19.11676 -18.24765 -17.16929 -17.00976 -16.58777 -16.43793 -15.97119 -15.75030 -15.58325 -15.51349 -15.42771 -15.08098 -15.00089 -14.81429 -14.34701 -14.12984 -13.92205 -13.88984 -13.82979 -13.67174 -13.55950 -13.19201 -12.58872 -12.58761 -12.39292 -12.34958 -11.97786 -11.95518 -11.80519 -11.64918 -11.13511 -10.97651 -10.66581 -10.16710 -9.90438 -9.76394 -9.70599 -9.10702 -8.74184 -6.53441 -0.21452 0.46880 1.02806 1.13215 1.52782 1.59204 1.60447 1.69117 1.80209 1.90549 2.09664 2.41689 2.50705 2.87480 2.91078 3.03734 3.18609 3.88500 3.91264 3.96529 4.02839 4.12649 4.18347 4.28784 4.45846 4.58396 4.59857 4.67389 4.75890 4.81213 4.88454 4.89943 4.99071 5.11883 5.16632 5.17936 5.30839 5.40145 5.50686 5.58284 5.65905 5.85879 5.89281 5.93836 5.99743 6.30391 6.42278 6.44667 6.75015 7.13857 7.22774 7.47193 8.60846 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031035 B = 0.001467 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.994158 B =19088.048283 C =19416.367316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.278 3.722 3 C -0.051 4.051 4 C -0.069 4.069 5 C -0.116 4.116 6 C -0.049 4.049 7 C -0.086 4.086 8 C 0.143 3.857 9 N -0.720 5.720 10 C 0.710 3.290 11 O -0.603 6.603 12 N -0.636 5.636 13 C 0.288 3.712 14 C -0.290 4.290 15 C 0.054 3.946 16 N -0.345 5.345 17 C 0.260 3.740 18 C -0.621 4.621 19 H 0.046 0.954 20 C -0.019 4.019 21 N -0.925 5.925 22 Si 1.123 2.877 23 H -0.269 1.269 24 H -0.279 1.279 25 H -0.276 1.276 26 N -0.348 5.348 27 C -0.116 4.116 28 C -0.069 4.069 29 H 0.143 0.857 30 H 0.153 0.847 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.417 0.583 36 H 0.422 0.578 37 H 0.169 0.831 38 H 0.200 0.800 39 H 0.053 0.947 40 H 0.016 0.984 41 H 0.261 0.739 42 H 0.153 0.847 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.970 -11.903 13.174 29.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.036 4.036 3 C -0.055 4.055 4 C -0.090 4.090 5 C -0.133 4.133 6 C -0.051 4.051 7 C -0.124 4.124 8 C 0.019 3.981 9 N -0.377 5.377 10 C 0.409 3.591 11 O -0.482 6.482 12 N -0.288 5.288 13 C 0.032 3.968 14 C -0.321 4.321 15 C -0.094 4.094 16 N -0.127 5.127 17 C 0.140 3.860 18 C -0.659 4.659 19 H 0.064 0.936 20 C -0.218 4.218 21 N -0.561 5.561 22 Si 0.944 3.056 23 H -0.195 1.195 24 H -0.204 1.204 25 H -0.201 1.201 26 N -0.179 5.179 27 C -0.134 4.134 28 C -0.090 4.090 29 H 0.161 0.839 30 H 0.171 0.829 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.254 0.746 36 H 0.259 0.741 37 H 0.186 0.814 38 H 0.216 0.784 39 H 0.071 0.929 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.170 0.830 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -23.650 -11.064 13.261 29.284 hybrid contribution -1.457 -0.820 -0.567 1.765 sum -25.106 -11.885 12.693 30.540 Atomic orbital electron populations 1.81293 1.13703 1.09699 1.10304 1.26129 0.93054 0.92237 0.92194 1.16161 0.83000 1.01211 1.05087 1.21364 0.94772 0.96566 0.96254 1.21291 0.93251 0.99558 0.99237 1.20070 0.95654 0.94308 0.95054 1.20828 0.90387 1.02193 0.98971 1.21281 0.76587 1.00717 0.99466 1.44850 1.07675 1.52689 1.32463 1.15828 0.80184 0.80486 0.82590 1.90848 1.67932 1.48354 1.41021 1.41398 1.04927 1.51087 1.31431 1.19101 0.89708 0.95822 0.92205 1.21712 1.01028 1.08732 1.00617 1.23160 0.84690 1.00614 1.00947 1.48531 1.07074 1.35878 1.21231 1.19406 0.75865 0.95128 0.95586 1.22321 1.01107 1.45099 0.97373 0.93602 1.27268 0.96306 0.95219 1.03024 1.70917 1.40119 1.42874 1.02163 0.82841 0.74796 0.76458 0.71554 1.19453 1.20416 1.20134 1.77254 1.12687 1.18949 1.08975 1.21290 0.93255 0.99099 0.99742 1.21362 0.94779 0.96451 0.96388 0.83895 0.82891 0.87749 0.87838 0.92019 0.91908 0.74570 0.74055 0.81366 0.78356 0.92941 0.96588 0.92958 0.82972 0.83944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.02 18.54 19.00 0.35 -9.67 16 2 C 0.28 4.22 15.33 88.33 1.35 5.58 16 3 C -0.05 -0.49 5.73 -21.36 -0.12 -0.61 16 4 C -0.07 -0.47 9.76 22.54 0.22 -0.25 16 5 C -0.12 -0.53 9.68 22.23 0.22 -0.32 16 6 C -0.05 -0.22 5.14 -19.80 -0.10 -0.32 16 7 C -0.09 -0.19 5.45 29.85 0.16 -0.03 16 8 C 0.14 1.42 5.66 86.38 0.49 1.91 16 9 N -0.72 -9.31 5.56 -478.54 -2.66 -11.97 16 10 C 0.71 17.71 8.53 179.06 1.53 19.23 16 11 O -0.60 -19.85 13.47 -4.00 -0.05 -19.90 16 12 N -0.64 -17.61 5.45 -321.24 -1.75 -19.36 16 13 C 0.29 11.14 8.11 133.31 1.08 12.22 16 14 C -0.29 -11.15 9.61 22.11 0.21 -10.94 16 15 C 0.05 2.10 11.44 83.52 0.96 3.06 16 16 N -0.35 -16.08 3.67 -351.84 -1.29 -17.37 16 17 C 0.26 13.27 5.57 85.64 0.48 13.74 16 18 C -0.62 -35.05 9.24 25.60 0.24 -34.82 16 19 H 0.05 2.71 7.81 -2.91 -0.02 2.68 16 20 C -0.02 -1.03 5.46 84.65 0.46 -0.57 16 21 N -0.92 -53.65 13.65 21.45 0.29 -53.35 16 22 Si 1.12 49.11 29.90 68.60 2.05 51.16 16 23 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 24 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 25 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 26 N -0.35 -15.91 12.42 -54.43 -0.68 -16.59 16 27 C -0.12 -0.56 9.68 22.23 0.22 -0.34 16 28 C -0.07 -0.48 9.76 22.54 0.22 -0.26 16 29 H 0.14 0.61 8.06 -2.91 -0.02 0.59 16 30 H 0.15 0.15 8.06 -2.91 -0.02 0.13 16 31 H 0.10 -0.06 8.08 -2.39 -0.02 -0.08 16 32 H 0.10 -0.04 8.08 -2.39 -0.02 -0.06 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.42 2.41 8.49 -92.71 -0.79 1.62 16 36 H 0.42 8.86 8.84 -92.71 -0.82 8.04 16 37 H 0.17 6.30 5.91 -2.91 -0.02 6.28 16 38 H 0.20 6.12 8.06 -2.91 -0.02 6.10 16 39 H 0.05 2.58 7.94 -2.39 -0.02 2.56 16 40 H 0.02 0.87 8.00 -2.39 -0.02 0.85 16 41 H 0.26 14.98 7.22 -92.71 -0.67 14.32 16 42 H 0.15 0.21 8.06 -2.91 -0.02 0.19 16 43 H 0.14 0.65 8.06 -2.91 -0.02 0.62 16 Total: -1.00 -80.22 385.06 3.44 -76.78 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -0.43 Total: 12.99 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 7.60 Total: 7.29 kcal Atomic # 7 Polarization: -122.58 SS G_CDS: -5.73 Total: -128.32 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.05 Total: -19.90 kcal Atomic # 14 Polarization: 49.11 SS G_CDS: 2.05 Total: 51.16 kcal Total: -80.22 3.44 -76.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596753365.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.225 kcal (2) G-P(sol) polarization free energy of solvation -80.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds