Wall clock time and date at job start Sat Apr 11 2020 05:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35238 * 126.06507 * 2 1 4 4 C 1.40422 * 107.86245 * 179.84952 * 3 2 1 5 5 N 1.40096 * 125.97153 * 180.16854 * 4 3 2 6 6 C 1.34776 * 120.00216 * 0.26298 * 5 4 3 7 7 O 1.21608 * 119.99737 * 0.02562 * 6 5 4 8 8 C 1.47498 * 120.00086 * 180.02562 * 6 5 4 9 9 C 1.39453 * 120.24959 * 352.62332 * 8 6 5 10 10 C 1.38281 * 120.27825 * 179.78533 * 9 8 6 11 11 C 1.37885 * 120.72729 * 0.46987 * 10 9 8 12 12 C 1.39675 * 120.11109 * 359.78609 * 11 10 9 13 13 N 1.35863 * 133.51393 * 180.02562 * 12 11 10 14 14 C 1.30086 * 109.53594 * 179.97438 * 13 12 11 15 15 N 1.36124 * 110.05139 * 0.02562 * 14 13 12 16 16 C 1.46497 * 126.30558 * 179.97438 * 15 14 13 17 17 C 1.37516 * 107.38071 * 359.97438 * 15 14 13 18 18 N 1.31229 * 108.05258 * 0.41354 * 4 3 2 19 19 N 1.34972 * 126.07044 * 180.30343 * 2 1 3 20 20 C 1.46498 * 125.97226 * 359.97127 * 19 2 1 21 21 C 1.50698 * 109.47561 * 89.99801 * 20 19 2 22 22 H 1.08000 * 119.99724 * 359.97438 * 21 20 19 23 23 C 1.37878 * 120.00337 * 180.02562 * 21 20 19 24 24 N 1.31520 * 119.99835 * 359.97438 * 23 21 20 25 25 Si 1.86790 * 120.00108 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47397 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.47413 * 119.99977 * 25 23 21 28 28 H 1.48505 * 109.47103 * 239.99437 * 25 23 21 29 29 H 1.09000 * 109.47646 * 269.69140 * 1 2 3 30 30 H 1.09006 * 109.47007 * 149.69492 * 1 2 3 31 31 H 1.09000 * 109.47040 * 29.69817 * 1 2 3 32 32 H 1.07995 * 126.06452 * 359.96760 * 3 2 1 33 33 H 0.97004 * 119.99698 * 180.27083 * 5 4 3 34 34 H 1.07998 * 119.85738 * 359.97438 * 9 8 6 35 35 H 1.07998 * 119.63577 * 180.23257 * 10 9 8 36 36 H 1.07996 * 119.94350 * 179.76091 * 11 10 9 37 37 H 1.08002 * 124.97208 * 180.02562 * 14 13 12 38 38 H 1.09002 * 109.47403 * 252.78330 * 16 15 14 39 39 H 1.08999 * 109.47330 * 12.78815 * 16 15 14 40 40 H 1.09011 * 109.46785 * 132.78639 * 16 15 14 41 41 H 1.08999 * 109.47304 * 209.99717 * 20 19 2 42 42 H 1.09003 * 109.47416 * 329.99456 * 20 19 2 43 43 H 0.96994 * 119.99766 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3031 1.0932 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7730 1.4746 0.0080 6 6 4.6362 2.8154 0.0146 7 8 3.5268 3.3133 0.0172 8 6 5.8321 3.6787 0.0187 9 6 7.1010 3.1205 0.1706 10 6 8.2229 3.9288 0.1701 11 6 8.1065 5.2956 0.0299 12 6 6.8465 5.8799 -0.1185 13 7 6.4220 7.1612 -0.2734 14 6 5.1249 7.1809 -0.3703 15 7 4.6310 5.9154 -0.2836 16 6 3.2195 5.5287 -0.3489 17 6 5.7013 5.0669 -0.1234 18 7 3.6337 -0.6577 -0.0035 19 7 2.3017 -1.0910 -0.0058 20 6 1.8500 -2.4845 -0.0126 21 6 1.6945 -2.9554 -1.4356 22 1 1.9101 -2.2835 -2.2533 23 6 1.2759 -4.2435 -1.6938 24 7 1.0129 -5.0615 -0.6981 25 14 1.0839 -4.8272 -3.4577 26 1 1.4400 -3.7241 -4.3858 27 1 1.9824 -5.9852 -3.6966 28 1 -0.3241 -5.2365 -3.6932 29 1 -0.3634 -0.0055 1.0276 30 1 -0.3633 -0.8873 -0.5186 31 1 -0.3633 0.8927 -0.5091 32 1 1.9717 2.1210 -0.0005 33 1 5.6579 1.0773 0.0062 34 1 7.2081 2.0520 0.2859 35 1 9.2009 3.4851 0.2846 36 1 8.9909 5.9153 0.0351 37 1 4.5273 8.0711 -0.5005 38 1 2.8769 5.2353 0.6434 39 1 2.6276 6.3727 -0.7029 40 1 3.1040 4.6902 -1.0358 41 1 2.5848 -3.1072 0.4978 42 1 0.8916 -2.5584 0.5014 43 1 0.7181 -5.9675 -0.8797 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600818638.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:47 Heat of formation + Delta-G solvation = 137.268482 kcal Electronic energy + Delta-G solvation = -28279.082887 eV Core-core repulsion = 24327.727180 eV Total energy + Delta-G solvation = -3951.355707 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.47680 -40.80895 -39.43338 -37.44089 -35.10983 -34.13866 -33.46681 -31.76140 -31.13526 -30.57679 -29.64771 -27.15898 -26.71883 -26.42546 -24.61103 -23.17363 -22.41313 -22.26424 -20.55209 -19.99302 -19.14559 -17.52397 -17.46735 -16.82166 -16.72787 -16.21188 -16.09571 -15.48442 -15.36925 -15.10326 -14.83334 -14.41102 -14.18836 -14.05307 -13.78118 -13.33577 -13.08920 -12.64833 -12.54053 -12.46203 -12.33203 -12.24988 -11.92858 -11.76611 -11.60417 -11.46605 -11.12126 -10.89907 -10.64929 -10.49755 -10.44864 -10.28403 -9.95152 -9.58364 -9.44872 -8.69456 -8.67116 -8.35913 -8.01903 -7.53588 -6.30420 -4.38257 0.29095 1.20740 2.10933 2.48072 2.62960 2.67157 2.94205 3.16801 3.25075 3.30810 3.50870 3.76357 3.78577 3.97466 4.25449 4.29467 4.49275 4.61420 4.69362 4.98980 5.03366 5.05132 5.14751 5.34883 5.36778 5.41874 5.63001 5.65152 5.81595 5.88623 6.01877 6.03035 6.07590 6.17757 6.21956 6.38666 6.46553 6.48954 6.64817 6.86356 6.89348 6.99344 7.34432 7.53947 7.57760 7.62341 7.83426 7.97651 8.12624 8.56919 8.69872 9.28495 10.76934 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019909 B = 0.002447 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.065886 B =11440.567184 C =12070.225606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.092 3.908 3 C -0.289 4.289 4 C 0.262 3.738 5 N -0.621 5.621 6 C 0.565 3.435 7 O -0.521 6.521 8 C -0.123 4.123 9 C -0.063 4.063 10 C -0.139 4.139 11 C -0.035 4.035 12 C 0.034 3.966 13 N -0.498 5.498 14 C 0.258 3.742 15 N -0.479 5.479 16 C 0.087 3.913 17 C 0.100 3.900 18 N -0.318 5.318 19 N -0.315 5.315 20 C 0.258 3.742 21 C -0.537 4.537 22 H 0.065 0.935 23 C 0.066 3.934 24 N -0.891 5.891 25 Si 0.906 3.094 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.159 0.841 33 H 0.409 0.591 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.215 0.785 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.110 0.890 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.720 20.709 2.489 22.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.040 4.040 3 C -0.319 4.319 4 C 0.010 3.990 5 N -0.268 5.268 6 C 0.353 3.647 7 O -0.399 6.399 8 C -0.129 4.129 9 C -0.083 4.083 10 C -0.159 4.159 11 C -0.054 4.054 12 C -0.085 4.085 13 N -0.217 5.217 14 C -0.028 4.028 15 N -0.166 5.166 16 C -0.054 4.054 17 C -0.014 4.014 18 N -0.149 5.149 19 N -0.097 5.097 20 C 0.140 3.860 21 C -0.575 4.575 22 H 0.083 0.917 23 C -0.138 4.138 24 N -0.529 5.529 25 Si 0.733 3.267 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.176 0.824 33 H 0.246 0.754 34 H 0.153 0.847 35 H 0.156 0.844 36 H 0.152 0.848 37 H 0.232 0.768 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.128 0.872 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.928 20.349 2.499 21.981 hybrid contribution -0.671 -0.713 -0.889 1.322 sum 7.257 19.636 1.610 20.996 Atomic orbital electron populations 1.20379 0.87888 1.03890 1.02555 1.21078 0.94937 0.87150 1.00814 1.21211 0.89602 0.99730 1.21405 1.18936 0.87067 0.89602 1.03421 1.42371 1.07768 1.04930 1.71715 1.18174 0.89298 0.80969 0.76210 1.90730 1.26856 1.72784 1.49544 1.18646 0.93524 0.89612 1.11128 1.21196 0.90632 1.00102 0.96378 1.20823 0.98858 0.92730 1.03498 1.20475 0.94727 0.94407 0.95810 1.19048 0.93237 0.89228 1.06981 1.70518 1.09316 1.19807 1.22056 1.25439 0.90796 0.87934 0.98631 1.45370 1.07929 1.06283 1.57021 1.22551 0.75540 1.01487 1.05818 1.18545 0.88315 0.91365 1.03126 1.77272 1.00019 1.08446 1.29121 1.49021 1.00922 1.07864 1.51899 1.19714 0.96016 0.71260 0.99005 1.21351 1.46818 0.98015 0.91321 0.91695 1.24933 0.94646 0.96038 0.98175 1.69928 1.44853 1.06993 1.31105 0.86302 0.77902 0.78821 0.83675 1.19577 1.20612 1.20617 0.91060 0.89868 0.90641 0.82352 0.75411 0.84651 0.84415 0.84790 0.76841 0.89788 0.91181 0.87212 0.92948 0.92747 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.44 9.89 36.01 0.36 -1.08 16 2 C 0.09 1.85 6.92 -82.28 -0.57 1.28 16 3 C -0.29 -5.57 9.52 -39.83 -0.38 -5.95 16 4 C 0.26 5.11 8.11 -154.44 -1.25 3.86 16 5 N -0.62 -9.38 5.40 -12.09 -0.07 -9.44 16 6 C 0.56 8.05 7.71 -12.49 -0.10 7.95 16 7 O -0.52 -7.96 7.91 5.27 0.04 -7.92 16 8 C -0.12 -1.50 5.88 -104.95 -0.62 -2.11 16 9 C -0.06 -0.59 9.51 -39.11 -0.37 -0.97 16 10 C -0.14 -1.14 9.99 -39.69 -0.40 -1.54 16 11 C -0.03 -0.33 10.09 -39.17 -0.40 -0.73 16 12 C 0.03 0.41 7.22 -84.71 -0.61 -0.20 16 13 N -0.50 -6.02 11.28 -12.05 -0.14 -6.16 16 14 C 0.26 2.46 12.47 -89.72 -1.12 1.34 16 15 N -0.48 -5.29 3.19 -122.93 -0.39 -5.68 16 16 C 0.09 0.84 9.12 59.85 0.55 1.38 16 17 C 0.10 1.26 6.78 -83.76 -0.57 0.69 16 18 N -0.32 -7.13 12.59 31.43 0.40 -6.73 16 19 N -0.31 -7.25 3.59 -58.33 -0.21 -7.46 16 20 C 0.26 6.46 5.81 -5.20 -0.03 6.43 16 21 C -0.54 -14.50 9.39 -34.44 -0.32 -14.83 16 22 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 23 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 24 N -0.89 -24.66 13.29 55.43 0.74 -23.93 16 25 Si 0.91 20.80 29.54 -169.99 -5.02 15.77 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.08 1.46 7.71 -51.93 -0.40 1.06 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.16 2.85 5.91 -52.49 -0.31 2.54 16 33 H 0.41 5.04 6.91 -40.82 -0.28 4.76 16 34 H 0.14 0.97 6.46 -52.49 -0.34 0.63 16 35 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 37 H 0.22 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.08 0.89 7.31 -51.93 -0.38 0.51 16 39 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 40 H 0.11 1.30 5.87 -52.08 -0.31 0.99 16 41 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.05 1.35 7.65 -51.93 -0.40 0.95 16 43 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 362.61 15.07 5.46 5.46 Total: -1.00 -33.38 362.61 -10.03 -43.41 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -4.92 Total: 5.47 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -5.93 Total: -2.80 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: 0.33 Total: -59.40 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.04 Total: -7.92 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.38 -10.03 -43.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600818638.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.679 kcal (2) G-P(sol) polarization free energy of solvation -33.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds