Wall clock time and date at job start Sat Apr 11 2020 05:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86796 * 120.00106 * 2 1 4 4 H 1.48502 * 109.46945 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47255 * 300.00228 * 3 2 1 6 6 H 1.48496 * 109.46941 * 60.00428 * 3 2 1 7 7 C 1.40028 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00018 * 196.84621 * 7 2 1 9 9 C 1.41539 * 120.00334 * 16.84867 * 7 2 1 10 10 C 1.41178 * 120.99847 * 203.63457 * 9 7 2 11 11 C 1.37592 * 119.02279 * 179.97438 * 10 9 7 12 12 N 1.32078 * 121.10967 * 0.02562 * 11 10 9 13 13 C 1.32478 * 122.23013 * 0.02562 * 12 11 10 14 14 N 1.39380 * 119.58279 * 179.97438 * 13 12 11 15 15 C 1.34778 * 119.99553 * 5.22982 * 14 13 12 16 16 O 1.21522 * 120.00198 * 355.14060 * 15 14 13 17 17 C 1.48082 * 119.99523 * 175.13958 * 15 14 13 18 18 C 1.39272 * 120.04969 * 179.97438 * 17 15 14 19 19 N 1.32192 * 120.06535 * 180.02562 * 18 17 15 20 20 C 1.31924 * 120.16830 * 359.97438 * 19 18 17 21 21 C 1.39667 * 120.09759 * 0.02806 * 20 19 18 22 22 N 1.38975 * 120.03173 * 179.97438 * 21 20 19 23 23 C 1.48537 * 111.00262 * 62.60339 * 22 21 20 24 24 C 1.54928 * 103.22980 * 159.71936 * 23 22 21 25 25 C 1.54597 * 102.92274 * 322.58510 * 24 23 22 26 26 C 1.47910 * 111.00049 * 179.97438 * 22 21 20 27 27 N 1.32336 * 119.93658 * 359.97438 * 21 20 19 28 28 C 1.38627 * 120.83673 * 0.25374 * 13 12 11 29 29 H 0.97005 * 120.00072 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.49175 * 0.02562 * 10 9 7 31 31 H 1.08004 * 119.44543 * 180.02562 * 11 10 9 32 32 H 0.96997 * 119.99999 * 185.22887 * 14 13 12 33 33 H 1.08008 * 119.96706 * 0.04011 * 18 17 15 34 34 H 1.07998 * 119.95529 * 180.02562 * 20 19 18 35 35 H 1.09000 * 110.66325 * 278.15769 * 23 22 21 36 36 H 1.09004 * 110.66417 * 41.28071 * 23 22 21 37 37 H 1.09000 * 110.73023 * 204.22736 * 24 23 22 38 38 H 1.09004 * 110.72563 * 80.93986 * 24 23 22 39 39 H 1.08998 * 110.31326 * 263.03975 * 25 24 23 40 40 H 1.09006 * 110.30682 * 140.87159 * 25 24 23 41 41 H 1.09001 * 109.91299 * 333.50722 * 26 22 21 42 42 H 1.08998 * 109.91655 * 94.79976 * 26 22 21 43 43 H 1.08002 * 120.60220 * 179.71624 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3463 -0.0006 5 1 1.8827 2.3964 -1.2125 6 1 1.8827 2.3963 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0527 -1.2329 0.2705 9 6 1.3454 -2.4120 -0.3563 10 6 1.8230 -3.6649 0.0856 11 6 1.1474 -4.8051 -0.2841 12 7 0.0670 -4.7429 -1.0413 13 6 -0.4211 -3.5931 -1.4828 14 7 -1.5649 -3.5917 -2.2794 15 6 -2.2274 -4.7427 -2.5091 16 8 -1.7799 -5.7943 -2.0960 17 6 -3.5008 -4.7258 -3.2648 18 6 -4.1861 -5.9146 -3.5033 19 7 -5.3225 -5.8999 -4.1783 20 6 -5.8119 -4.7602 -4.6279 21 6 -5.1304 -3.5640 -4.3928 22 7 -5.6469 -2.3643 -4.8675 23 6 -6.9642 -2.0695 -4.2478 24 6 -7.1205 -0.5424 -4.4567 25 6 -5.6815 -0.0162 -4.2509 26 6 -4.7692 -1.2297 -4.5069 27 7 -3.9923 -3.5741 -3.7175 28 6 0.1945 -2.3918 -1.1673 29 1 -0.4850 0.8401 0.0004 30 1 2.7052 -3.7275 0.7055 31 1 1.5065 -5.7671 0.0505 32 1 -1.8840 -2.7624 -2.6684 33 1 -3.7887 -6.8494 -3.1361 34 1 -6.7409 -4.7522 -5.1787 35 1 -7.7598 -2.6113 -4.7593 36 1 -6.9527 -2.3134 -3.1854 37 1 -7.7961 -0.1185 -3.7137 38 1 -7.4700 -0.3249 -5.4660 39 1 -5.5529 0.3449 -3.2305 40 1 -5.4635 0.7785 -4.9645 41 1 -4.2062 -1.4681 -3.6044 42 1 -4.0857 -1.0135 -5.3279 43 1 -0.2041 -1.4570 -1.5330 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601330615.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:52 Heat of formation + Delta-G solvation = 72.865926 kcal Electronic energy + Delta-G solvation = -28399.671570 eV Core-core repulsion = 24445.523159 eV Total energy + Delta-G solvation = -3954.148411 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.62416 -39.66280 -38.86099 -37.71261 -34.75505 -34.34058 -33.74302 -32.99289 -30.60820 -29.64088 -29.39313 -28.66054 -26.06437 -25.54118 -24.39438 -22.39396 -21.99114 -21.34567 -21.06303 -20.00931 -18.25040 -17.99913 -17.47525 -16.89753 -16.59616 -16.17687 -15.60243 -15.41134 -15.27141 -14.48719 -14.32629 -14.25331 -14.06909 -13.78726 -13.49906 -13.28830 -12.99310 -12.79393 -12.66111 -12.55517 -12.36303 -12.01090 -11.65809 -11.51631 -11.40274 -11.36185 -11.25151 -10.95136 -10.83558 -10.39442 -10.23674 -10.14082 -9.97353 -9.82563 -9.40924 -9.26042 -8.58798 -8.06205 -7.81899 -7.10098 -6.87046 -4.66032 0.30591 0.85730 2.47386 2.73009 2.98803 3.00861 3.04325 3.14096 3.24537 3.35399 3.80439 3.81403 3.90884 4.11283 4.21553 4.32763 4.44933 4.62085 4.67408 4.96155 4.99344 5.02652 5.10599 5.15600 5.31967 5.48563 5.52991 5.62739 5.66093 5.78352 5.82865 5.90670 6.01022 6.16629 6.51514 6.58152 6.63198 6.75096 6.88609 7.02656 7.04732 7.31299 7.38267 7.47819 7.71376 7.86473 8.13137 8.33231 8.60818 8.68777 8.74464 9.61215 10.01094 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010271 B = 0.003514 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.418741 B = 7965.800724 C =10522.830205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.079 3.921 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.454 4.454 8 H 0.084 0.916 9 C 0.143 3.857 10 C -0.283 4.283 11 C 0.120 3.880 12 N -0.556 5.556 13 C 0.333 3.667 14 N -0.635 5.635 15 C 0.557 3.443 16 O -0.465 6.465 17 C 0.070 3.930 18 C 0.076 3.924 19 N -0.421 5.421 20 C 0.064 3.936 21 C 0.254 3.746 22 N -0.454 5.454 23 C 0.040 3.960 24 C -0.122 4.122 25 C -0.133 4.133 26 C 0.031 3.969 27 N -0.452 5.452 28 C -0.238 4.238 29 H 0.282 0.718 30 H 0.103 0.897 31 H 0.125 0.875 32 H 0.416 0.584 33 H 0.184 0.816 34 H 0.174 0.826 35 H 0.093 0.907 36 H 0.057 0.943 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.448 1.706 -8.956 17.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.485 4.485 8 H 0.102 0.898 9 C 0.135 3.865 10 C -0.307 4.307 11 C -0.034 4.034 12 N -0.276 5.276 13 C 0.109 3.891 14 N -0.280 5.280 15 C 0.339 3.661 16 O -0.333 6.333 17 C -0.072 4.072 18 C -0.083 4.083 19 N -0.134 5.134 20 C -0.102 4.102 21 C 0.017 3.983 22 N -0.173 5.173 23 C -0.086 4.086 24 C -0.160 4.160 25 C -0.171 4.171 26 C -0.096 4.096 27 N -0.175 5.175 28 C -0.264 4.264 29 H 0.093 0.907 30 H 0.121 0.879 31 H 0.143 0.857 32 H 0.252 0.748 33 H 0.201 0.799 34 H 0.191 0.809 35 H 0.111 0.889 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.829 0.225 -9.432 17.575 hybrid contribution 0.685 2.190 0.738 2.410 sum -14.144 2.415 -8.694 16.777 Atomic orbital electron populations 1.69788 1.07728 1.29380 1.34214 1.25966 0.94757 1.01547 0.91821 0.86218 0.81088 0.80564 0.78673 1.18213 1.19567 1.19848 1.19620 0.97960 0.90663 1.40251 0.89830 1.17563 0.89767 0.92349 0.86820 1.21909 1.05233 0.93850 1.09667 1.21762 0.90812 0.96913 0.93911 1.67190 1.15664 1.26404 1.18304 1.18147 0.87127 0.91033 0.92778 1.43194 1.25500 1.10647 1.48640 1.17732 0.82651 0.85007 0.80721 1.90895 1.65315 1.29686 1.47443 1.22367 0.96980 0.90084 0.97760 1.23668 0.90515 0.99448 0.94676 1.68528 1.10603 1.27698 1.06573 1.23531 1.00970 0.87079 0.98576 1.21015 0.91900 0.93521 0.91897 1.62061 1.04718 1.00265 1.50298 1.23400 0.89449 0.97549 0.98192 1.22507 0.97247 0.93439 1.02841 1.22451 0.94241 0.97755 1.02699 1.22964 0.95537 0.88080 1.02996 1.68275 1.12724 1.28670 1.07813 1.21538 1.02416 0.95458 1.06947 0.90720 0.87860 0.85711 0.74775 0.79886 0.80936 0.88871 0.92438 0.90302 0.90255 0.90785 0.90493 0.89780 0.89522 0.85412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.07 10.93 55.55 0.61 -18.47 16 2 C 0.08 1.86 5.20 -17.35 -0.09 1.77 16 3 Si 0.91 17.59 29.59 -169.99 -5.03 12.56 16 4 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 5 H -0.27 -5.13 7.11 56.52 0.40 -4.72 16 6 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.45 -11.50 9.12 -37.65 -0.34 -11.84 16 8 H 0.08 2.03 7.90 -52.49 -0.41 1.62 16 9 C 0.14 3.73 5.60 -106.55 -0.60 3.13 16 10 C -0.28 -6.86 9.90 -38.70 -0.38 -7.24 16 11 C 0.12 2.85 11.15 -17.68 -0.20 2.66 16 12 N -0.56 -14.10 7.85 -12.54 -0.10 -14.20 16 13 C 0.33 8.13 7.41 -154.77 -1.15 6.98 16 14 N -0.63 -13.07 5.37 -12.29 -0.07 -13.13 16 15 C 0.56 11.01 7.77 -12.22 -0.09 10.92 16 16 O -0.46 -10.50 14.59 5.35 0.08 -10.42 16 17 C 0.07 1.12 6.75 -82.87 -0.56 0.56 16 18 C 0.08 1.09 10.76 -17.01 -0.18 0.90 16 19 N -0.42 -5.49 10.48 -12.53 -0.13 -5.63 16 20 C 0.06 0.72 10.62 -16.98 -0.18 0.54 16 21 C 0.25 3.11 6.21 -154.90 -0.96 2.15 16 22 N -0.45 -4.66 5.30 -169.11 -0.90 -5.56 16 23 C 0.04 0.30 6.07 -1.90 -0.01 0.29 16 24 C -0.12 -0.80 7.06 -24.87 -0.18 -0.98 16 25 C -0.13 -1.08 6.93 -25.39 -0.18 -1.25 16 26 C 0.03 0.33 6.36 -2.77 -0.02 0.31 16 27 N -0.45 -6.58 7.54 -8.82 -0.07 -6.65 16 28 C -0.24 -6.02 8.62 -38.47 -0.33 -6.35 16 29 H 0.28 6.15 8.29 -40.82 -0.34 5.81 16 30 H 0.10 2.29 8.06 -52.49 -0.42 1.86 16 31 H 0.13 2.57 8.06 -52.48 -0.42 2.14 16 32 H 0.42 7.61 8.05 -40.82 -0.33 7.28 16 33 H 0.18 2.47 7.64 -52.48 -0.40 2.07 16 34 H 0.17 1.35 8.05 -52.49 -0.42 0.93 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.49 8.00 -51.93 -0.42 0.08 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 1.05 6.52 -51.93 -0.34 0.71 16 42 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.13 3.21 6.21 -52.49 -0.33 2.89 16 LS Contribution 364.11 15.07 5.49 5.49 Total: -1.00 -30.46 364.11 -10.73 -41.19 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -5.16 Total: 12.26 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -5.45 Total: 2.55 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: -0.65 Total: -63.62 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.08 Total: -10.42 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -5.03 Total: 12.56 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.46 -10.73 -41.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601330615.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.051 kcal (2) G-P(sol) polarization free energy of solvation -30.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds