Wall clock time and date at job start Sat Apr 11 2020 05:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86796 * 120.00106 * 2 1 4 4 H 1.48502 * 109.46945 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47255 * 300.00228 * 3 2 1 6 6 H 1.48496 * 109.46941 * 60.00428 * 3 2 1 7 7 C 1.40028 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00018 * 196.84621 * 7 2 1 9 9 C 1.41539 * 120.00334 * 16.84867 * 7 2 1 10 10 C 1.41178 * 120.99847 * 203.63457 * 9 7 2 11 11 C 1.37592 * 119.02279 * 179.97438 * 10 9 7 12 12 N 1.32078 * 121.10967 * 0.02562 * 11 10 9 13 13 C 1.32478 * 122.23013 * 0.02562 * 12 11 10 14 14 N 1.39380 * 119.58279 * 179.97438 * 13 12 11 15 15 C 1.34778 * 119.99553 * 5.22982 * 14 13 12 16 16 O 1.21522 * 120.00198 * 355.14060 * 15 14 13 17 17 C 1.48082 * 119.99523 * 175.13958 * 15 14 13 18 18 C 1.39272 * 120.04969 * 179.97438 * 17 15 14 19 19 N 1.32192 * 120.06535 * 180.02562 * 18 17 15 20 20 C 1.31924 * 120.16830 * 359.97438 * 19 18 17 21 21 C 1.39667 * 120.09759 * 0.02806 * 20 19 18 22 22 N 1.38975 * 120.03173 * 179.97438 * 21 20 19 23 23 C 1.48537 * 111.00262 * 62.60339 * 22 21 20 24 24 C 1.54928 * 103.22980 * 159.71936 * 23 22 21 25 25 C 1.54597 * 102.92274 * 322.58510 * 24 23 22 26 26 C 1.47910 * 111.00049 * 179.97438 * 22 21 20 27 27 N 1.32336 * 119.93658 * 359.97438 * 21 20 19 28 28 C 1.38627 * 120.83673 * 0.25374 * 13 12 11 29 29 H 0.97005 * 120.00072 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.49175 * 0.02562 * 10 9 7 31 31 H 1.08004 * 119.44543 * 180.02562 * 11 10 9 32 32 H 0.96997 * 119.99999 * 185.22887 * 14 13 12 33 33 H 1.08008 * 119.96706 * 0.04011 * 18 17 15 34 34 H 1.07998 * 119.95529 * 180.02562 * 20 19 18 35 35 H 1.09000 * 110.66325 * 278.15769 * 23 22 21 36 36 H 1.09004 * 110.66417 * 41.28071 * 23 22 21 37 37 H 1.09000 * 110.73023 * 204.22736 * 24 23 22 38 38 H 1.09004 * 110.72563 * 80.93986 * 24 23 22 39 39 H 1.08998 * 110.31326 * 263.03975 * 25 24 23 40 40 H 1.09006 * 110.30682 * 140.87159 * 25 24 23 41 41 H 1.09001 * 109.91299 * 333.50722 * 26 22 21 42 42 H 1.08998 * 109.91655 * 94.79976 * 26 22 21 43 43 H 1.08002 * 120.60220 * 179.71624 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3463 -0.0006 5 1 1.8827 2.3964 -1.2125 6 1 1.8827 2.3963 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0527 -1.2329 0.2705 9 6 1.3454 -2.4120 -0.3563 10 6 1.8230 -3.6649 0.0856 11 6 1.1474 -4.8051 -0.2841 12 7 0.0670 -4.7429 -1.0413 13 6 -0.4211 -3.5931 -1.4828 14 7 -1.5649 -3.5917 -2.2794 15 6 -2.2274 -4.7427 -2.5091 16 8 -1.7799 -5.7943 -2.0960 17 6 -3.5008 -4.7258 -3.2648 18 6 -4.1861 -5.9146 -3.5033 19 7 -5.3225 -5.8999 -4.1783 20 6 -5.8119 -4.7602 -4.6279 21 6 -5.1304 -3.5640 -4.3928 22 7 -5.6469 -2.3643 -4.8675 23 6 -6.9642 -2.0695 -4.2478 24 6 -7.1205 -0.5424 -4.4567 25 6 -5.6815 -0.0162 -4.2509 26 6 -4.7692 -1.2297 -4.5069 27 7 -3.9923 -3.5741 -3.7175 28 6 0.1945 -2.3918 -1.1673 29 1 -0.4850 0.8401 0.0004 30 1 2.7052 -3.7275 0.7055 31 1 1.5065 -5.7671 0.0505 32 1 -1.8840 -2.7624 -2.6684 33 1 -3.7887 -6.8494 -3.1361 34 1 -6.7409 -4.7522 -5.1787 35 1 -7.7598 -2.6113 -4.7593 36 1 -6.9527 -2.3134 -3.1854 37 1 -7.7961 -0.1185 -3.7137 38 1 -7.4700 -0.3249 -5.4660 39 1 -5.5529 0.3449 -3.2305 40 1 -5.4635 0.7785 -4.9645 41 1 -4.2062 -1.4681 -3.6044 42 1 -4.0857 -1.0135 -5.3279 43 1 -0.2041 -1.4570 -1.5330 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601330615.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:51 Heat of formation + Delta-G solvation = 53.912941 kcal Electronic energy + Delta-G solvation = -28400.493433 eV Core-core repulsion = 24445.523159 eV Total energy + Delta-G solvation = -3954.970274 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.69262 -41.22320 -39.92621 -39.32070 -36.27439 -35.85078 -35.30024 -33.94904 -32.50485 -30.76332 -30.34176 -30.02537 -27.96059 -26.74875 -25.40171 -23.94255 -23.63087 -22.42627 -21.84512 -21.54449 -19.58994 -19.58051 -18.74185 -18.01285 -17.72513 -17.26906 -17.02711 -16.96153 -16.54814 -16.11428 -15.92945 -15.75075 -15.48100 -14.96564 -14.73005 -14.39918 -14.32579 -14.24213 -14.07317 -13.65098 -13.31233 -13.22418 -12.95449 -12.94715 -12.69225 -12.43434 -12.24297 -12.17136 -12.10818 -11.92706 -11.64583 -11.56454 -11.43631 -11.19572 -11.10763 -10.43639 -9.99814 -9.69991 -9.51678 -8.94333 -8.68889 -6.59497 -0.82087 -0.18365 0.71450 0.95959 1.40136 1.50467 1.55552 1.71126 1.79626 2.18505 2.22078 2.54752 2.77909 2.82571 3.07592 3.27367 3.54370 3.64518 3.70635 3.83998 3.95948 4.08669 4.17072 4.26966 4.28548 4.50262 4.67011 4.70518 4.75791 4.83856 4.88044 4.88351 4.96243 5.01463 5.04192 5.13973 5.16815 5.18881 5.43248 5.44826 5.54691 5.71486 5.84984 5.97712 6.07331 6.32402 6.48392 6.50938 6.74814 6.79323 7.02939 7.74163 8.23151 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010271 B = 0.003514 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.418741 B = 7965.800724 C =10522.830205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.040 3.960 3 Si 0.987 3.013 4 H -0.257 1.257 5 H -0.262 1.262 6 H -0.265 1.265 7 C -0.482 4.482 8 H 0.086 0.914 9 C 0.115 3.885 10 C -0.296 4.296 11 C 0.116 3.884 12 N -0.579 5.579 13 C 0.330 3.670 14 N -0.633 5.633 15 C 0.559 3.441 16 O -0.499 6.499 17 C 0.049 3.951 18 C 0.078 3.922 19 N -0.426 5.426 20 C 0.089 3.911 21 C 0.252 3.748 22 N -0.450 5.450 23 C 0.035 3.965 24 C -0.114 4.114 25 C -0.132 4.132 26 C 0.027 3.973 27 N -0.466 5.466 28 C -0.257 4.257 29 H 0.293 0.707 30 H 0.119 0.881 31 H 0.155 0.845 32 H 0.423 0.577 33 H 0.185 0.815 34 H 0.217 0.783 35 H 0.122 0.878 36 H 0.048 0.952 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.059 0.941 42 H 0.081 0.919 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.527 3.079 -10.149 19.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.177 4.177 3 Si 0.807 3.193 4 H -0.180 1.180 5 H -0.186 1.186 6 H -0.189 1.189 7 C -0.512 4.512 8 H 0.105 0.895 9 C 0.107 3.893 10 C -0.320 4.320 11 C -0.038 4.038 12 N -0.300 5.300 13 C 0.105 3.895 14 N -0.279 5.279 15 C 0.343 3.657 16 O -0.370 6.370 17 C -0.091 4.091 18 C -0.079 4.079 19 N -0.139 5.139 20 C -0.078 4.078 21 C 0.013 3.987 22 N -0.169 5.169 23 C -0.089 4.089 24 C -0.152 4.152 25 C -0.170 4.170 26 C -0.100 4.100 27 N -0.189 5.189 28 C -0.282 4.282 29 H 0.104 0.896 30 H 0.137 0.863 31 H 0.172 0.828 32 H 0.261 0.739 33 H 0.202 0.798 34 H 0.233 0.767 35 H 0.141 0.859 36 H 0.067 0.933 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.077 0.923 42 H 0.099 0.901 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.915 1.579 -10.618 20.034 hybrid contribution 1.171 1.810 1.031 2.390 sum -15.743 3.389 -9.587 18.742 Atomic orbital electron populations 1.69823 1.09173 1.31054 1.33526 1.26846 0.95515 1.04690 0.90671 0.85081 0.79467 0.75654 0.79094 1.18015 1.18636 1.18928 1.19918 0.98337 0.91597 1.41365 0.89542 1.17988 0.90420 0.93517 0.87356 1.22110 1.06024 0.93584 1.10257 1.22258 0.90249 0.98130 0.93129 1.67316 1.16548 1.26781 1.19309 1.18367 0.87817 0.90686 0.92635 1.43198 1.24744 1.11628 1.48312 1.18226 0.83435 0.83994 0.80048 1.90853 1.66621 1.30580 1.48984 1.21712 0.96163 0.91372 0.99867 1.23655 0.90833 0.98830 0.94600 1.68647 1.09947 1.28443 1.06834 1.24235 1.01342 0.85846 0.96408 1.21409 0.91173 0.94974 0.91106 1.62165 1.05632 0.99324 1.49754 1.23616 0.88527 0.98873 0.97930 1.22531 0.96177 0.92358 1.04166 1.22448 0.94986 0.96909 1.02667 1.22954 0.96105 0.89373 1.01578 1.68191 1.14110 1.28180 1.08458 1.21497 1.03162 0.95500 1.08053 0.89626 0.86273 0.82801 0.73898 0.79771 0.76697 0.85947 0.93334 0.88796 0.88883 0.91381 0.89467 0.92289 0.90105 0.86073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.87 10.93 21.84 0.24 -39.63 16 2 C 0.04 1.92 5.20 85.29 0.44 2.36 16 3 Si 0.99 35.63 29.59 68.60 2.03 37.66 16 4 H -0.26 -9.12 7.11 99.48 0.71 -8.42 16 5 H -0.26 -9.03 7.11 99.48 0.71 -8.33 16 6 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 7 C -0.48 -24.91 9.12 23.52 0.21 -24.69 16 8 H 0.09 4.26 7.90 -2.91 -0.02 4.24 16 9 C 0.12 6.20 5.60 -21.12 -0.12 6.09 16 10 C -0.30 -14.72 9.90 22.84 0.23 -14.49 16 11 C 0.12 5.61 11.15 84.50 0.94 6.56 16 12 N -0.58 -30.34 7.85 -193.57 -1.52 -31.86 16 13 C 0.33 16.80 7.41 132.79 0.98 17.79 16 14 N -0.63 -27.41 5.37 -311.07 -1.67 -29.08 16 15 C 0.56 23.07 7.77 86.86 0.67 23.75 16 16 O -0.50 -23.53 14.59 -3.79 -0.06 -23.59 16 17 C 0.05 1.59 6.75 41.81 0.28 1.88 16 18 C 0.08 2.23 10.76 84.89 0.91 3.14 16 19 N -0.43 -10.33 10.48 -193.57 -2.03 -12.36 16 20 C 0.09 1.73 10.62 85.02 0.90 2.63 16 21 C 0.25 5.79 6.21 133.22 0.83 6.61 16 22 N -0.45 -8.26 5.30 -688.93 -3.65 -11.91 16 23 C 0.04 0.43 6.07 86.65 0.53 0.95 16 24 C -0.11 -1.14 7.06 31.80 0.22 -0.91 16 25 C -0.13 -1.92 6.93 31.46 0.22 -1.70 16 26 C 0.03 0.55 6.36 86.43 0.55 1.10 16 27 N -0.47 -13.66 7.54 -181.81 -1.37 -15.03 16 28 C -0.26 -13.54 8.62 22.99 0.20 -13.34 16 29 H 0.29 12.79 8.29 -92.70 -0.77 12.02 16 30 H 0.12 5.36 8.06 -2.91 -0.02 5.33 16 31 H 0.15 6.33 8.06 -2.91 -0.02 6.30 16 32 H 0.42 16.47 8.05 -92.71 -0.75 15.72 16 33 H 0.19 5.10 7.64 -2.91 -0.02 5.07 16 34 H 0.22 2.27 8.05 -2.91 -0.02 2.25 16 35 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.05 0.71 8.00 -2.38 -0.02 0.69 16 37 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 39 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 41 H 0.06 1.52 6.52 -2.39 -0.02 1.50 16 42 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.12 6.40 6.21 -2.91 -0.02 6.39 16 Total: -1.00 -68.05 364.11 0.30 -67.75 By element: Atomic # 1 Polarization: 39.99 SS G_CDS: 0.32 Total: 40.31 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: 8.01 Total: 17.72 kcal Atomic # 7 Polarization: -129.86 SS G_CDS: -10.00 Total: -139.86 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.06 Total: -23.59 kcal Atomic # 14 Polarization: 35.63 SS G_CDS: 2.03 Total: 37.66 kcal Total: -68.05 0.30 -67.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601330615.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.666 kcal (2) G-P(sol) polarization free energy of solvation -68.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds