Wall clock time and date at job start Sat Apr 11 2020 05:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37983 * 120.07649 * 2 1 4 4 C 1.38335 * 120.14591 * 180.02562 * 3 2 1 5 5 C 1.38382 * 120.29466 * 0.02562 * 4 3 2 6 6 C 1.37946 * 120.14028 * 359.67685 * 5 4 3 7 7 C 1.39550 * 120.07268 * 180.02562 * 2 1 3 8 8 C 1.47827 * 120.14348 * 359.97438 * 7 2 1 9 9 C 1.35773 * 126.58384 * 129.99951 * 8 7 2 10 10 N 1.34134 * 107.51990 * 179.80384 * 9 8 7 11 11 C 1.30359 * 108.90195 * 0.36616 * 10 9 8 12 12 C 1.50702 * 125.48422 * 179.89602 * 11 10 9 13 13 N 1.46497 * 109.47236 * 89.69350 * 12 11 10 14 14 C 1.35313 * 125.86667 * 125.29282 * 13 12 11 15 15 C 1.35349 * 106.17218 * 180.18574 * 14 13 12 16 16 C 1.50697 * 126.75364 * 179.85517 * 15 14 13 17 17 N 1.46499 * 109.47276 * 94.71254 * 16 15 14 18 18 C 1.36935 * 119.99938 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00518 * 359.72965 * 18 17 16 20 20 C 1.38817 * 119.99990 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99869 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99909 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47361 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46860 * 120.00310 * 22 20 18 25 25 H 1.48500 * 109.47264 * 240.00123 * 22 20 18 26 26 N 1.33774 * 106.49914 * 359.59715 * 15 14 13 27 27 N 1.28635 * 108.88067 * 0.25663 * 26 15 14 28 28 O 1.34000 * 109.03411 * 359.63154 * 11 10 9 29 29 H 1.09004 * 109.47052 * 269.97901 * 1 2 3 30 30 H 1.09006 * 109.46795 * 29.97373 * 1 2 3 31 31 H 1.08995 * 109.47709 * 149.97033 * 1 2 3 32 32 H 1.07999 * 119.92687 * 0.04687 * 3 2 1 33 33 H 1.07997 * 119.85729 * 180.02562 * 4 3 2 34 34 H 1.07990 * 119.93011 * 180.02562 * 5 4 3 35 35 H 1.07996 * 120.07090 * 180.32180 * 6 5 4 36 36 H 1.08003 * 126.23965 * 0.02611 * 9 8 7 37 37 H 1.08997 * 109.46644 * 329.69104 * 12 11 10 38 38 H 1.09004 * 109.46850 * 209.69627 * 12 11 10 39 39 H 1.08001 * 126.91913 * 0.04070 * 14 13 12 40 40 H 1.09004 * 109.47205 * 334.71228 * 16 15 14 41 41 H 1.09005 * 109.47240 * 214.71438 * 16 15 14 42 42 H 0.96999 * 119.99984 * 0.02562 * 17 16 15 43 43 H 0.96996 * 119.99743 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5818 1.1957 -0.0005 5 6 4.2813 0.0017 -0.0016 6 6 3.6022 -1.1990 0.0046 7 6 2.2062 -1.2077 -0.0005 8 6 1.4719 -2.4907 -0.0005 9 6 1.6779 -3.5409 -0.8360 10 7 0.8068 -4.5030 -0.4975 11 6 0.0783 -4.0819 0.4981 12 6 -1.0196 -4.8646 1.1713 13 7 -0.4566 -5.6442 2.2764 14 6 -0.8738 -5.6113 3.5632 15 6 -0.0810 -6.4756 4.2387 16 6 -0.1435 -6.7949 5.7102 17 7 -0.9668 -7.9891 5.9162 18 6 -1.1685 -8.4716 7.1817 19 1 -0.7172 -7.9745 8.0276 20 6 -1.9491 -9.6028 7.3770 21 7 -2.4948 -10.2118 6.3457 22 14 -2.2237 -10.2615 9.1033 23 1 -1.5068 -9.4033 10.0804 24 1 -3.6766 -10.2537 9.4107 25 1 -1.7066 -11.6508 9.1911 26 7 0.7654 -6.9949 3.3423 27 7 0.5168 -6.4819 2.1892 28 8 0.4666 -2.8432 0.8305 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8903 -0.5135 31 1 -0.3634 -0.8896 -0.5142 32 1 1.6585 2.1294 0.0008 33 1 4.1183 2.1330 -0.0001 34 1 5.3612 0.0099 -0.0016 35 1 4.1492 -2.1301 0.0090 36 1 2.4119 -3.5935 -1.6265 37 1 -1.4807 -5.5383 0.4491 38 1 -1.7716 -4.1767 1.5580 39 1 -1.6762 -5.0137 3.9699 40 1 -0.5830 -5.9537 6.2462 41 1 0.8634 -6.9786 6.0852 42 1 -1.3690 -8.4379 5.1561 43 1 -3.0399 -11.0025 6.4821 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603225739.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:24 Heat of formation + Delta-G solvation = 169.150933 kcal Electronic energy + Delta-G solvation = -27228.113442 eV Core-core repulsion = 23278.140262 eV Total energy + Delta-G solvation = -3949.973180 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.77157 -42.93938 -39.76171 -35.68295 -35.12014 -34.44535 -33.48885 -32.64941 -31.83623 -30.29195 -29.77052 -27.94038 -26.88309 -25.78616 -23.97294 -22.93084 -22.78430 -22.13702 -21.64951 -21.22340 -20.55483 -18.08310 -17.72377 -17.22415 -16.79199 -16.54630 -16.31025 -15.87350 -15.57035 -14.73147 -14.57453 -14.45197 -14.35018 -14.09324 -13.87149 -13.71635 -13.56236 -13.24278 -13.05239 -12.82510 -12.61101 -12.56888 -11.96409 -11.83570 -11.70703 -11.65242 -11.23667 -10.97557 -10.88549 -10.81094 -10.47760 -10.09870 -9.99003 -9.89955 -9.72905 -9.30016 -8.88596 -8.85244 -8.76784 -6.89925 -5.72144 -3.01795 0.29043 0.83291 1.04684 1.70475 2.06619 2.15107 2.69190 2.90735 3.20389 3.45046 3.46943 3.52433 3.54925 3.99362 4.26062 4.29653 4.35667 4.54329 4.55858 4.64299 4.73754 4.74215 4.75890 4.90649 5.05375 5.13463 5.16777 5.24400 5.26683 5.34917 5.45912 5.49697 5.63359 5.63774 5.77540 5.81555 5.88193 5.95155 6.00860 6.18842 6.37642 6.39243 6.65047 6.66140 6.78316 7.27648 7.73536 8.45013 8.81606 9.56925 10.12494 10.48597 11.50648 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021945 B = 0.001917 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.590302 B =14599.839805 C =14958.025106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.057 4.057 3 C -0.122 4.122 4 C -0.101 4.101 5 C -0.124 4.124 6 C -0.083 4.083 7 C -0.027 4.027 8 C 0.011 3.989 9 C -0.018 4.018 10 N -0.437 5.437 11 C 0.164 3.836 12 C 0.225 3.775 13 N -0.308 5.308 14 C -0.040 4.040 15 C -0.003 4.003 16 C 0.233 3.767 17 N -0.726 5.726 18 C -0.239 4.239 19 H 0.074 0.926 20 C -0.014 4.014 21 N -0.931 5.931 22 Si 0.909 3.091 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.291 1.291 26 N -0.249 5.249 27 N -0.079 5.079 28 O -0.186 6.186 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.190 0.810 37 H 0.142 0.858 38 H 0.135 0.865 39 H 0.193 0.807 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.386 0.614 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.173 27.725 -18.428 34.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.057 4.057 3 C -0.140 4.140 4 C -0.119 4.119 5 C -0.142 4.142 6 C -0.102 4.102 7 C -0.028 4.028 8 C -0.043 4.043 9 C -0.159 4.159 10 N -0.165 5.165 11 C -0.042 4.042 12 C 0.102 3.898 13 N -0.104 5.104 14 C -0.190 4.190 15 C -0.140 4.140 16 C 0.103 3.897 17 N -0.371 5.371 18 C -0.370 4.370 19 H 0.092 0.908 20 C -0.210 4.210 21 N -0.580 5.580 22 Si 0.740 3.260 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 N -0.117 5.117 27 N -0.058 5.058 28 O -0.072 6.072 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.207 0.793 37 H 0.159 0.841 38 H 0.152 0.848 39 H 0.210 0.790 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.219 0.781 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.078 26.474 -19.409 33.806 hybrid contribution -1.003 0.615 1.483 1.893 sum 7.076 27.090 -17.926 33.245 Atomic orbital electron populations 1.20855 0.90598 1.02961 1.03019 1.20067 0.96392 0.91999 0.97264 1.21004 0.94334 0.97316 1.01306 1.21339 0.94217 0.98442 0.97899 1.21095 1.00358 0.91874 1.00872 1.21212 0.91963 0.99126 0.97855 1.17504 0.92058 0.87517 1.05685 1.21450 0.91874 0.97094 0.93858 1.23442 1.01435 0.88692 1.02370 1.70378 1.05245 1.28922 1.11990 1.25745 1.00450 0.82095 0.95933 1.20038 0.89039 0.92889 0.87785 1.47166 1.25307 1.29944 1.07962 1.23471 1.05075 1.06982 0.83428 1.22514 0.95041 0.97368 0.99076 1.18960 0.96055 0.91237 0.83399 1.42315 1.58857 1.29079 1.06824 1.19277 1.25112 1.07638 0.84973 0.90827 1.24770 1.00608 0.98304 0.97324 1.69692 1.37861 1.21934 1.28488 0.86082 0.77375 0.78677 0.83826 1.20474 1.21930 1.21864 1.75146 1.21793 1.19622 0.95181 1.78427 1.04369 1.03878 1.19092 1.84506 1.41978 1.31128 1.49557 0.90425 0.90922 0.91615 0.85318 0.85436 0.85121 0.85111 0.79307 0.84060 0.84753 0.79007 0.94383 0.94291 0.78063 0.93563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 9.27 36.00 0.33 -0.44 16 2 C -0.06 -0.45 5.91 -104.23 -0.62 -1.06 16 3 C -0.12 -0.76 9.69 -39.64 -0.38 -1.15 16 4 C -0.10 -0.58 10.04 -39.49 -0.40 -0.97 16 5 C -0.12 -0.77 10.03 -39.64 -0.40 -1.16 16 6 C -0.08 -0.64 9.72 -39.18 -0.38 -1.02 16 7 C -0.03 -0.24 5.81 -104.98 -0.61 -0.85 16 8 C 0.01 0.11 5.57 -36.54 -0.20 -0.09 16 9 C -0.02 -0.20 11.77 -17.43 -0.21 -0.40 16 10 N -0.44 -5.57 11.27 -10.82 -0.12 -5.69 16 11 C 0.16 1.89 7.70 -12.90 -0.10 1.79 16 12 C 0.23 2.13 7.08 -5.19 -0.04 2.09 16 13 N -0.31 -4.47 3.43 -62.44 -0.21 -4.69 16 14 C -0.04 -0.61 11.50 -17.05 -0.20 -0.80 16 15 C 0.00 -0.06 6.61 -82.78 -0.55 -0.61 16 16 C 0.23 4.96 6.82 -5.20 -0.04 4.92 16 17 N -0.73 -19.16 5.59 -61.08 -0.34 -19.50 16 18 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 19 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -28.87 13.06 55.49 0.72 -28.14 16 22 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 26 N -0.25 -5.28 12.41 33.29 0.41 -4.87 16 27 N -0.08 -1.47 12.92 60.35 0.78 -0.69 16 28 O -0.19 -2.11 9.96 4.23 0.04 -2.07 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 31 H 0.06 0.48 6.81 -51.93 -0.35 0.13 16 32 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 33 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 34 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 35 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.19 1.49 8.06 -52.48 -0.42 1.06 16 37 H 0.14 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.13 0.69 8.07 -51.93 -0.42 0.27 16 39 H 0.19 2.10 8.06 -52.49 -0.42 1.68 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.39 10.96 7.66 -40.82 -0.31 10.65 16 43 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 380.20 15.07 5.73 5.73 Total: -1.00 -37.53 380.20 -7.31 -44.85 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -5.28 Total: 4.65 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -4.02 Total: -7.22 kcal Atomic # 7 Polarization: -64.82 SS G_CDS: 1.24 Total: -63.58 kcal Atomic # 8 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.53 -7.31 -44.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603225739.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.997 kcal (2) G-P(sol) polarization free energy of solvation -37.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds