Wall clock time and date at job start Sat Apr 11 2020 05:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00625 * 2 1 4 4 H 1.48498 * 109.47122 * 240.00261 * 3 2 1 5 5 H 1.48502 * 109.46684 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47029 * 119.99643 * 3 2 1 7 7 C 1.37882 * 119.99666 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99936 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99888 * 359.97438 * 7 2 1 10 10 C 1.50703 * 109.47411 * 180.02562 * 9 7 2 11 11 C 1.35346 * 126.75522 * 124.99374 * 10 9 7 12 12 N 1.35308 * 106.17488 * 179.97438 * 11 10 9 13 13 C 1.46500 * 125.86873 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47496 * 124.99663 * 13 12 11 15 15 N 1.31134 * 126.54839 * 89.97129 * 14 13 12 16 16 C 1.34490 * 105.61260 * 180.02562 * 15 14 13 17 17 C 1.50707 * 126.28527 * 180.02562 * 16 15 14 18 18 C 1.53006 * 109.47006 * 269.97560 * 17 16 15 19 19 C 1.50697 * 109.47008 * 179.97438 * 18 17 16 20 20 C 1.38228 * 119.99965 * 269.72778 * 19 18 17 21 21 C 1.38242 * 119.99771 * 179.76950 * 20 19 18 22 22 C 1.38231 * 119.99841 * 0.49784 * 21 20 19 23 23 C 1.38230 * 120.00384 * 359.75584 * 22 21 20 24 24 C 1.38233 * 119.99656 * 359.97438 * 23 22 21 25 25 N 1.29938 * 107.42847 * 359.97438 * 16 15 14 26 26 O 1.21303 * 110.25257 * 359.97438 * 25 16 15 27 27 N 1.28711 * 108.26726 * 0.26581 * 12 11 10 28 28 N 1.28642 * 110.17273 * 359.55989 * 27 12 11 29 29 H 0.97000 * 119.99493 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47278 * 59.99904 * 9 7 2 31 31 H 1.09008 * 109.47039 * 300.00152 * 9 7 2 32 32 H 1.08005 * 126.90801 * 359.96887 * 11 10 9 33 33 H 1.09008 * 109.47172 * 5.00136 * 13 12 11 34 34 H 1.09001 * 109.47369 * 245.00311 * 13 12 11 35 35 H 1.09000 * 109.47044 * 29.97342 * 17 16 15 36 36 H 1.08995 * 109.46918 * 149.97622 * 17 16 15 37 37 H 1.08995 * 109.46600 * 299.99625 * 18 17 16 38 38 H 1.09000 * 109.46953 * 59.99898 * 18 17 16 39 39 H 1.08004 * 120.00399 * 359.97438 * 20 19 18 40 40 H 1.08003 * 119.99872 * 180.23119 * 21 20 19 41 41 H 1.08001 * 119.99738 * 179.72836 * 22 21 20 42 42 H 1.07994 * 120.00586 * 179.97438 * 23 22 21 43 43 H 1.08005 * 120.00311 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2844 2.7464 0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2301 -3.6448 -0.0005 11 6 2.2836 -4.6645 0.8878 12 7 3.3136 -5.4505 0.4978 13 6 3.7534 -6.6807 1.1607 14 6 3.7677 -7.8110 0.1640 15 7 4.7747 -8.1696 -0.5955 16 6 4.3305 -9.2149 -1.3158 17 6 5.1168 -9.9896 -2.3419 18 6 4.9281 -9.3496 -3.7188 19 6 5.7149 -10.1238 -4.7447 20 6 7.0226 -9.7722 -5.0224 21 6 7.7458 -10.4855 -5.9600 22 6 7.1580 -11.5438 -6.6273 23 6 5.8487 -11.8922 -6.3534 24 6 5.1273 -11.1824 -5.4118 25 7 3.0992 -9.4349 -0.9638 26 8 2.7569 -8.6397 -0.1141 27 7 3.8438 -4.9290 -0.5527 28 7 3.2170 -3.8540 -0.8789 29 1 -0.4849 0.8401 0.0004 30 1 0.6239 -2.5567 -0.8902 31 1 0.6245 -2.5571 0.8897 32 1 1.6346 -4.8195 1.7371 33 1 3.0672 -6.9212 1.9728 34 1 4.7564 -6.5381 1.5629 35 1 6.1739 -9.9752 -2.0763 36 1 4.7629 -11.0201 -2.3687 37 1 3.8711 -9.3640 -3.9843 38 1 5.2821 -8.3190 -3.6919 39 1 7.4804 -8.9424 -4.5045 40 1 8.7688 -10.2132 -6.1743 41 1 7.7217 -12.0983 -7.3630 42 1 5.3893 -12.7187 -6.8750 43 1 4.1041 -11.4542 -5.1980 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603226723.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:30 Heat of formation + Delta-G solvation = 187.136375 kcal Electronic energy + Delta-G solvation = -26835.137300 eV Core-core repulsion = 22885.944027 eV Total energy + Delta-G solvation = -3949.193273 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.92397 -42.68179 -39.65754 -36.74049 -35.69590 -34.27443 -33.35450 -32.31472 -31.21476 -31.14899 -29.87422 -28.49165 -27.33019 -25.50147 -23.88716 -23.49095 -22.90012 -22.33188 -21.43551 -21.13157 -20.20326 -18.52063 -17.80258 -17.11131 -16.91870 -16.66656 -16.08900 -15.68947 -15.64337 -14.90893 -14.56018 -14.47848 -14.24596 -13.92582 -13.83326 -13.78920 -13.61443 -12.97471 -12.68186 -12.62498 -12.55669 -12.14587 -11.82814 -11.73416 -11.69732 -11.37575 -11.32580 -11.14412 -11.08904 -10.77258 -10.70445 -10.39855 -10.15954 -9.79855 -9.63632 -9.39218 -9.24918 -9.05260 -8.48459 -8.22685 -6.01283 -4.02249 0.65758 0.99151 1.07316 1.78783 1.93267 2.41629 2.71444 3.21368 3.34456 3.37558 3.40931 3.45334 3.47613 3.65304 4.25488 4.34928 4.47919 4.49656 4.57463 4.67467 4.75041 4.79840 4.81233 4.87070 5.02820 5.05579 5.18306 5.21381 5.35416 5.41400 5.49006 5.60114 5.63525 5.70343 5.74338 5.78824 5.93577 6.10361 6.13347 6.18968 6.29861 6.67154 6.91066 7.01397 7.47652 7.56922 7.81440 7.96198 8.32984 9.00572 9.14617 9.60772 11.09691 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014226 B = 0.001970 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.731966 B =14210.306059 C =15451.357938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.506 4.506 8 H 0.059 0.941 9 C 0.091 3.909 10 C 0.039 3.961 11 C -0.075 4.075 12 N -0.316 5.316 13 C 0.225 3.775 14 C 0.161 3.839 15 N -0.442 5.442 16 C 0.171 3.829 17 C -0.020 4.020 18 C -0.078 4.078 19 C -0.081 4.081 20 C -0.112 4.112 21 C -0.118 4.118 22 C -0.124 4.124 23 C -0.120 4.120 24 C -0.115 4.115 25 N -0.374 5.374 26 O 0.089 5.911 27 N -0.095 5.095 28 N -0.251 5.251 29 H 0.262 0.738 30 H 0.040 0.960 31 H 0.039 0.961 32 H 0.189 0.811 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.015 -26.377 -2.799 28.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.544 4.544 8 H 0.077 0.923 9 C 0.053 3.947 10 C -0.097 4.097 11 C -0.222 4.222 12 N -0.114 5.114 13 C 0.100 3.900 14 C -0.061 4.061 15 N -0.176 5.176 16 C -0.101 4.101 17 C -0.059 4.059 18 C -0.116 4.116 19 C -0.081 4.081 20 C -0.130 4.130 21 C -0.136 4.136 22 C -0.142 4.142 23 C -0.138 4.138 24 C -0.133 4.133 25 N -0.079 5.079 26 O 0.028 5.972 27 N -0.074 5.074 28 N -0.119 5.119 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.206 0.794 33 H 0.159 0.841 34 H 0.158 0.842 35 H 0.118 0.882 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.881 -27.040 -4.367 29.856 hybrid contribution -0.432 1.001 0.994 1.475 sum 11.449 -26.039 -3.373 28.644 Atomic orbital electron populations 1.69934 1.05965 1.26936 1.50849 1.24971 0.94887 0.99246 0.95259 0.86564 0.79485 0.82697 0.78747 1.20091 1.21321 1.20303 1.20987 0.93217 0.89706 1.50530 0.92292 1.17767 0.90828 0.87430 0.98707 1.23111 0.97585 0.97687 0.91305 1.23459 0.96825 0.95832 1.06083 1.47003 1.23693 1.18624 1.22060 1.20044 1.06226 0.74605 0.89121 1.28465 0.82909 0.95988 0.98768 1.71923 1.27921 1.10759 1.06993 1.25868 0.89597 0.94667 1.00012 1.19958 0.99358 0.97342 0.89204 1.20568 1.00523 0.99540 0.90986 1.19757 0.94544 0.96333 0.97441 1.21148 0.93881 0.99912 0.98089 1.21179 0.99985 0.95872 0.96613 1.21176 0.95401 0.97673 0.99968 1.21148 0.94683 0.99861 0.98076 1.21099 1.00018 0.95551 0.96660 1.74639 1.15663 1.12342 1.05248 1.85324 1.38498 1.32166 1.41198 1.78383 1.21034 1.06917 1.01036 1.75131 1.06667 1.06922 1.23218 0.92821 0.94165 0.94312 0.79394 0.84145 0.84218 0.88209 0.88851 0.90466 0.89719 0.85694 0.85964 0.86164 0.86071 0.86018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.23 13.29 55.43 0.74 -25.49 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -14.29 9.09 -34.44 -0.31 -14.60 16 8 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16 9 C 0.09 2.32 5.55 -29.03 -0.16 2.16 16 10 C 0.04 0.86 6.44 -82.78 -0.53 0.32 16 11 C -0.08 -1.23 11.49 -17.05 -0.20 -1.43 16 12 N -0.32 -4.80 3.43 -62.44 -0.21 -5.02 16 13 C 0.22 2.05 7.08 -5.19 -0.04 2.01 16 14 C 0.16 1.86 7.89 -13.05 -0.10 1.76 16 15 N -0.44 -5.67 11.55 -9.87 -0.11 -5.79 16 16 C 0.17 2.05 7.47 -156.38 -1.17 0.88 16 17 C -0.02 -0.18 5.82 -27.88 -0.16 -0.34 16 18 C -0.08 -0.73 5.33 -27.88 -0.15 -0.88 16 19 C -0.08 -0.71 5.13 -104.63 -0.54 -1.25 16 20 C -0.11 -0.96 9.70 -39.58 -0.38 -1.34 16 21 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 22 C -0.12 -0.91 10.05 -39.59 -0.40 -1.30 16 23 C -0.12 -0.89 10.05 -39.59 -0.40 -1.29 16 24 C -0.12 -0.95 9.70 -39.58 -0.38 -1.33 16 25 N -0.37 -4.83 12.16 30.90 0.38 -4.45 16 26 O 0.09 1.10 11.31 18.11 0.20 1.30 16 27 N -0.10 -1.88 12.93 60.35 0.78 -1.10 16 28 N -0.25 -5.84 12.40 33.29 0.41 -5.42 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.04 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.04 0.96 8.12 -51.92 -0.42 0.54 16 32 H 0.19 2.25 8.06 -52.48 -0.42 1.83 16 33 H 0.14 0.62 8.07 -51.92 -0.42 0.20 16 34 H 0.14 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 38 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 39 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 40 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 41 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 LS Contribution 383.53 15.07 5.78 5.78 Total: -1.00 -35.63 383.53 -7.93 -43.56 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -5.45 Total: -3.77 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -5.42 Total: -16.41 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: 1.98 Total: -47.27 kcal Atomic # 8 Polarization: 1.10 SS G_CDS: 0.20 Total: 1.30 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.63 -7.93 -43.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603226723.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 230.694 kcal (2) G-P(sol) polarization free energy of solvation -35.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 195.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 187.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds