Wall clock time and date at job start Sat Apr 11 2020 05:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00625 * 2 1 4 4 H 1.48498 * 109.47122 * 240.00261 * 3 2 1 5 5 H 1.48502 * 109.46684 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47029 * 119.99643 * 3 2 1 7 7 C 1.37882 * 119.99666 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99936 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99888 * 359.97438 * 7 2 1 10 10 C 1.50703 * 109.47411 * 180.02562 * 9 7 2 11 11 C 1.35346 * 126.75522 * 124.99374 * 10 9 7 12 12 N 1.35308 * 106.17488 * 179.97438 * 11 10 9 13 13 C 1.46500 * 125.86873 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47496 * 124.99663 * 13 12 11 15 15 N 1.31134 * 126.54839 * 89.97129 * 14 13 12 16 16 C 1.34490 * 105.61260 * 180.02562 * 15 14 13 17 17 C 1.50707 * 126.28527 * 180.02562 * 16 15 14 18 18 C 1.53006 * 109.47006 * 269.97560 * 17 16 15 19 19 C 1.50697 * 109.47008 * 179.97438 * 18 17 16 20 20 C 1.38228 * 119.99965 * 269.72778 * 19 18 17 21 21 C 1.38242 * 119.99771 * 179.76950 * 20 19 18 22 22 C 1.38231 * 119.99841 * 0.49784 * 21 20 19 23 23 C 1.38230 * 120.00384 * 359.75584 * 22 21 20 24 24 C 1.38233 * 119.99656 * 359.97438 * 23 22 21 25 25 N 1.29938 * 107.42847 * 359.97438 * 16 15 14 26 26 O 1.21303 * 110.25257 * 359.97438 * 25 16 15 27 27 N 1.28711 * 108.26726 * 0.26581 * 12 11 10 28 28 N 1.28642 * 110.17273 * 359.55989 * 27 12 11 29 29 H 0.97000 * 119.99493 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47278 * 59.99904 * 9 7 2 31 31 H 1.09008 * 109.47039 * 300.00152 * 9 7 2 32 32 H 1.08005 * 126.90801 * 359.96887 * 11 10 9 33 33 H 1.09008 * 109.47172 * 5.00136 * 13 12 11 34 34 H 1.09001 * 109.47369 * 245.00311 * 13 12 11 35 35 H 1.09000 * 109.47044 * 29.97342 * 17 16 15 36 36 H 1.08995 * 109.46918 * 149.97622 * 17 16 15 37 37 H 1.08995 * 109.46600 * 299.99625 * 18 17 16 38 38 H 1.09000 * 109.46953 * 59.99898 * 18 17 16 39 39 H 1.08004 * 120.00399 * 359.97438 * 20 19 18 40 40 H 1.08003 * 119.99872 * 180.23119 * 21 20 19 41 41 H 1.08001 * 119.99738 * 179.72836 * 22 21 20 42 42 H 1.07994 * 120.00586 * 179.97438 * 23 22 21 43 43 H 1.08005 * 120.00311 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2844 2.7464 0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2301 -3.6448 -0.0005 11 6 2.2836 -4.6645 0.8878 12 7 3.3136 -5.4505 0.4978 13 6 3.7534 -6.6807 1.1607 14 6 3.7677 -7.8110 0.1640 15 7 4.7747 -8.1696 -0.5955 16 6 4.3305 -9.2149 -1.3158 17 6 5.1168 -9.9896 -2.3419 18 6 4.9281 -9.3496 -3.7188 19 6 5.7149 -10.1238 -4.7447 20 6 7.0226 -9.7722 -5.0224 21 6 7.7458 -10.4855 -5.9600 22 6 7.1580 -11.5438 -6.6273 23 6 5.8487 -11.8922 -6.3534 24 6 5.1273 -11.1824 -5.4118 25 7 3.0992 -9.4349 -0.9638 26 8 2.7569 -8.6397 -0.1141 27 7 3.8438 -4.9290 -0.5527 28 7 3.2170 -3.8540 -0.8789 29 1 -0.4849 0.8401 0.0004 30 1 0.6239 -2.5567 -0.8902 31 1 0.6245 -2.5571 0.8897 32 1 1.6346 -4.8195 1.7371 33 1 3.0672 -6.9212 1.9728 34 1 4.7564 -6.5381 1.5629 35 1 6.1739 -9.9752 -2.0763 36 1 4.7629 -11.0201 -2.3687 37 1 3.8711 -9.3640 -3.9843 38 1 5.2821 -8.3190 -3.6919 39 1 7.4804 -8.9424 -4.5045 40 1 8.7688 -10.2132 -6.1743 41 1 7.7217 -12.0983 -7.3630 42 1 5.3893 -12.7187 -6.8750 43 1 4.1041 -11.4542 -5.1980 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603226723.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:29 Heat of formation + Delta-G solvation = 163.904783 kcal Electronic energy + Delta-G solvation = -26836.144697 eV Core-core repulsion = 22885.944027 eV Total energy + Delta-G solvation = -3950.200670 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.85424 -44.10676 -40.26263 -37.62096 -36.79092 -35.47868 -34.94897 -33.41562 -32.86298 -31.79582 -30.59303 -29.76259 -28.93773 -26.28486 -25.46663 -24.81643 -23.48951 -23.39878 -22.61413 -21.99225 -21.48924 -19.49030 -18.83091 -18.46721 -17.99707 -17.69157 -17.59643 -16.53249 -16.40001 -16.30877 -15.76386 -15.63050 -15.39815 -14.79801 -14.65181 -14.53530 -14.33705 -14.21690 -14.09760 -13.70065 -13.56746 -13.43024 -13.30566 -12.85929 -12.70728 -12.60175 -12.48375 -12.47598 -12.20328 -11.97178 -11.90065 -11.80557 -11.67170 -11.41692 -11.26801 -11.03953 -10.56402 -9.88539 -9.84549 -9.67020 -8.16797 -6.24935 -0.26856 0.37095 0.47666 0.60925 0.91369 1.42029 1.45266 1.49238 1.53076 1.69665 1.75607 2.39849 2.46107 2.78193 2.87492 3.16347 3.45231 3.60151 3.78835 3.80798 3.89905 4.03416 4.13219 4.15924 4.17992 4.27380 4.28740 4.32839 4.47776 4.54514 4.57697 4.63099 4.68450 4.77140 4.86724 4.92038 5.12036 5.15319 5.29578 5.43633 5.55322 5.55846 5.61168 5.66979 5.69134 5.78972 6.09482 6.24358 6.83328 6.90800 7.41519 7.65777 8.93682 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014226 B = 0.001970 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.731966 B =14210.306059 C =15451.357938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.959 3.041 4 H -0.278 1.278 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.523 4.523 8 H 0.045 0.955 9 C 0.101 3.899 10 C -0.011 4.011 11 C -0.030 4.030 12 N -0.298 5.298 13 C 0.215 3.785 14 C 0.163 3.837 15 N -0.465 5.465 16 C 0.168 3.832 17 C -0.015 4.015 18 C -0.069 4.069 19 C -0.092 4.092 20 C -0.127 4.127 21 C -0.126 4.126 22 C -0.128 4.128 23 C -0.125 4.125 24 C -0.126 4.126 25 N -0.392 5.392 26 O 0.087 5.913 27 N -0.115 5.115 28 N -0.303 5.303 29 H 0.266 0.734 30 H 0.005 0.995 31 H 0.041 0.959 32 H 0.242 0.758 33 H 0.201 0.799 34 H 0.168 0.832 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.126 0.874 40 H 0.139 0.861 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.950 -27.903 -1.397 30.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.784 3.216 4 H -0.204 1.204 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.562 4.562 8 H 0.063 0.937 9 C 0.062 3.938 10 C -0.148 4.148 11 C -0.179 4.179 12 N -0.095 5.095 13 C 0.094 3.906 14 C -0.060 4.060 15 N -0.199 5.199 16 C -0.105 4.105 17 C -0.054 4.054 18 C -0.107 4.107 19 C -0.092 4.092 20 C -0.145 4.145 21 C -0.144 4.144 22 C -0.146 4.146 23 C -0.143 4.143 24 C -0.144 4.144 25 N -0.098 5.098 26 O 0.027 5.973 27 N -0.093 5.093 28 N -0.171 5.171 29 H 0.074 0.926 30 H 0.023 0.977 31 H 0.059 0.941 32 H 0.258 0.742 33 H 0.218 0.782 34 H 0.185 0.815 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.144 0.856 40 H 0.157 0.843 41 H 0.160 0.840 42 H 0.159 0.841 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 12.845 -28.599 -2.964 31.490 hybrid contribution -0.695 1.329 0.571 1.605 sum 12.150 -27.269 -2.392 29.949 Atomic orbital electron populations 1.70029 1.07197 1.27900 1.51486 1.25769 0.95771 1.02594 0.94842 0.85589 0.78389 0.78766 0.78815 1.20388 1.20270 1.19151 1.21255 0.92798 0.91546 1.50553 0.93668 1.17410 0.91100 0.88220 0.97022 1.22741 0.98532 0.99339 0.94185 1.23953 0.95780 0.93157 1.04990 1.47347 1.22224 1.19457 1.20516 1.20927 1.09617 0.71165 0.88929 1.28886 0.82395 0.96143 0.98557 1.71940 1.28929 1.11321 1.07689 1.26320 0.89534 0.94538 1.00093 1.20053 0.99612 0.97568 0.88172 1.20426 0.99924 0.98736 0.91662 1.19746 0.94796 0.96868 0.97797 1.21290 0.94037 1.00397 0.98779 1.21448 1.00814 0.95851 0.96240 1.21507 0.95552 0.97509 1.00062 1.21447 0.94887 1.00192 0.97761 1.21277 1.00586 0.95591 0.96979 1.74629 1.16145 1.13128 1.05882 1.85295 1.38639 1.32290 1.41115 1.78256 1.21508 1.06543 1.03017 1.75032 1.07986 1.08903 1.25134 0.92560 0.97663 0.94120 0.74188 0.78236 0.81453 0.87255 0.87510 0.91428 0.91520 0.85580 0.84300 0.83990 0.84105 0.85294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.87 13.29 21.45 0.28 -54.58 16 2 C 0.01 0.49 5.46 84.66 0.46 0.95 16 3 Si 0.96 45.12 29.54 68.60 2.03 47.14 16 4 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.52 -30.28 9.09 25.60 0.23 -30.05 16 8 H 0.04 2.68 7.74 -2.91 -0.02 2.65 16 9 C 0.10 5.28 5.55 29.10 0.16 5.45 16 10 C -0.01 -0.48 6.44 41.60 0.27 -0.21 16 11 C -0.03 -0.90 11.49 83.49 0.96 0.06 16 12 N -0.30 -8.26 3.43 -351.46 -1.20 -9.47 16 13 C 0.21 3.04 7.08 85.63 0.61 3.64 16 14 C 0.16 3.39 7.89 88.38 0.70 4.09 16 15 N -0.46 -11.42 11.55 -303.21 -3.50 -14.93 16 16 C 0.17 3.92 7.47 138.47 1.03 4.95 16 17 C -0.02 -0.27 5.82 29.85 0.17 -0.10 16 18 C -0.07 -1.33 5.33 29.85 0.16 -1.17 16 19 C -0.09 -1.63 5.13 -19.87 -0.10 -1.74 16 20 C -0.13 -2.16 9.70 22.27 0.22 -1.94 16 21 C -0.13 -1.81 10.05 22.27 0.22 -1.58 16 22 C -0.13 -1.67 10.05 22.27 0.22 -1.45 16 23 C -0.13 -1.70 10.05 22.27 0.22 -1.48 16 24 C -0.13 -2.01 9.70 22.27 0.22 -1.80 16 25 N -0.39 -9.80 12.16 -60.33 -0.73 -10.53 16 26 O 0.09 1.98 11.31 74.85 0.85 2.83 16 27 N -0.11 -4.48 12.93 37.02 0.48 -4.00 16 28 N -0.30 -14.39 12.40 -48.60 -0.60 -14.99 16 29 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 30 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.04 2.05 8.12 -2.38 -0.02 2.03 16 32 H 0.24 4.45 8.06 -2.91 -0.02 4.42 16 33 H 0.20 0.48 8.07 -2.38 -0.02 0.46 16 34 H 0.17 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.07 1.40 8.09 -2.39 -0.02 1.38 16 38 H 0.07 1.50 8.08 -2.39 -0.02 1.48 16 39 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 40 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 41 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16 42 H 0.14 1.28 8.06 -2.91 -0.02 1.25 16 43 H 0.13 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -81.71 383.53 4.38 -77.33 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: 1.03 Total: 3.57 kcal Atomic # 6 Polarization: -28.12 SS G_CDS: 5.76 Total: -22.37 kcal Atomic # 7 Polarization: -103.21 SS G_CDS: -5.28 Total: -108.49 kcal Atomic # 8 Polarization: 1.98 SS G_CDS: 0.85 Total: 2.83 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -81.71 4.38 -77.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603226723.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 241.230 kcal (2) G-P(sol) polarization free energy of solvation -81.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds