Wall clock time and date at job start Sat Apr 11 2020 05:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38260 * 119.99559 * 2 1 4 4 C 1.38212 * 119.99650 * 179.71963 * 3 2 1 5 5 C 1.38255 * 120.00300 * 0.28729 * 4 3 2 6 6 C 1.38216 * 119.99744 * 359.97134 * 5 4 3 7 7 C 1.38208 * 120.00322 * 180.21766 * 2 1 3 8 8 C 1.50699 * 120.00214 * 0.06609 * 7 2 1 9 9 C 1.50698 * 109.47457 * 85.16406 * 8 7 2 10 10 N 1.29947 * 126.29152 * 269.69325 * 9 8 7 11 11 O 1.21299 * 110.25063 * 179.84219 * 10 9 8 12 12 C 1.33648 * 109.80961 * 0.42501 * 11 10 9 13 13 C 1.50703 * 126.54988 * 179.71683 * 12 11 10 14 14 N 1.46498 * 109.47194 * 270.02659 * 13 12 11 15 15 C 1.35307 * 125.86849 * 124.99906 * 14 13 12 16 16 C 1.35357 * 106.17799 * 179.97438 * 15 14 13 17 17 C 1.50696 * 126.75426 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.46964 * 125.00146 * 17 16 15 19 19 H 1.08002 * 119.99640 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99556 * 179.97438 * 18 17 16 21 21 N 1.31508 * 120.00567 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99481 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47124 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.46879 * 120.00118 * 22 20 18 25 25 H 1.48499 * 109.46943 * 240.00202 * 22 20 18 26 26 N 1.33779 * 106.49214 * 0.02562 * 16 15 14 27 27 N 1.28640 * 108.88468 * 359.73603 * 26 16 15 28 28 N 1.31123 * 106.89910 * 359.73761 * 12 11 10 29 29 H 1.09000 * 109.46985 * 89.99836 * 1 2 3 30 30 H 1.09000 * 109.47001 * 209.99377 * 1 2 3 31 31 H 1.08998 * 109.47342 * 329.99390 * 1 2 3 32 32 H 1.08002 * 120.00476 * 0.02562 * 3 2 1 33 33 H 1.07999 * 119.99941 * 180.25946 * 4 3 2 34 34 H 1.08005 * 120.00230 * 179.97438 * 5 4 3 35 35 H 1.08002 * 119.99734 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.47287 * 205.17377 * 8 7 2 37 37 H 1.09006 * 109.46739 * 325.17067 * 8 7 2 38 38 H 1.09001 * 109.46796 * 30.02739 * 13 12 11 39 39 H 1.09000 * 109.46929 * 150.02016 * 13 12 11 40 40 H 1.08004 * 126.91371 * 0.02562 * 15 14 13 41 41 H 1.08996 * 109.46973 * 245.00299 * 17 16 15 42 42 H 1.08995 * 109.46944 * 5.00039 * 17 16 15 43 43 H 0.97002 * 120.00366 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0059 5 6 4.2717 0.0002 0.0057 6 6 3.5806 -1.1968 0.0003 7 6 2.1981 -1.1969 -0.0045 8 6 1.4447 -2.5020 -0.0110 9 6 1.0912 -2.8711 -1.4287 10 7 0.0044 -2.5427 -2.0608 11 8 0.0224 -2.9909 -3.1878 12 6 1.1528 -3.6761 -3.3847 13 6 1.5595 -4.3931 -4.6463 14 7 1.0734 -5.7744 -4.6013 15 6 0.2982 -6.3728 -5.5351 16 6 0.0888 -7.6365 -5.0978 17 6 -0.7172 -8.7073 -5.7869 18 6 0.1360 -9.9352 -5.9753 19 1 1.1593 -9.9398 -5.6300 20 6 -0.3904 -11.0529 -6.5874 21 7 -1.6369 -11.0478 -7.0064 22 14 0.6670 -12.5752 -6.8202 23 1 2.0215 -12.3269 -6.2644 24 1 0.0448 -13.7229 -6.1125 25 1 0.7749 -12.8861 -8.2683 26 7 0.7371 -7.7477 -3.9329 27 7 1.3145 -6.6288 -3.6693 28 7 1.8402 -3.6057 -2.2703 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3634 0.8899 0.5139 32 1 1.6582 2.1327 0.0004 33 1 4.1203 2.1328 0.0101 34 1 5.3517 0.0002 0.0099 35 1 4.1207 -2.1321 -0.0002 36 1 2.0681 -3.2836 0.4233 37 1 0.5319 -2.3975 0.5755 38 1 1.1286 -3.8841 -5.5084 39 1 2.6463 -4.3929 -4.7300 40 1 -0.0771 -5.9313 -6.4465 41 1 -1.5851 -8.9578 -5.1770 42 1 -1.0493 -8.3429 -6.7590 43 1 -2.0070 -11.8340 -7.4373 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603243248.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:34 Heat of formation + Delta-G solvation = 190.858000 kcal Electronic energy + Delta-G solvation = -27355.336685 eV Core-core repulsion = 23406.304794 eV Total energy + Delta-G solvation = -3949.031891 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.89495 -42.67179 -39.97167 -36.50904 -35.56890 -33.89522 -33.30219 -32.66870 -31.92451 -31.14056 -28.58245 -28.34556 -27.33401 -26.97092 -24.07500 -23.53326 -23.00590 -22.21356 -21.43320 -20.98587 -20.18218 -18.50860 -17.81141 -16.92954 -16.75361 -16.63518 -16.11504 -15.86618 -15.36239 -15.17946 -14.56889 -14.39675 -14.23756 -14.02765 -13.70982 -13.54487 -13.43848 -12.97904 -12.68556 -12.60950 -12.36855 -12.29514 -12.15661 -11.96996 -11.75972 -11.39529 -11.34709 -11.23084 -11.08288 -10.77288 -10.70536 -10.33377 -10.13303 -9.79623 -9.63336 -9.36338 -9.20540 -8.99693 -8.48831 -8.22384 -6.01551 -4.02349 0.67378 0.90993 1.02114 1.82068 1.95034 2.43336 2.72684 3.17222 3.34105 3.35041 3.42386 3.44198 3.49906 3.74775 4.27076 4.32450 4.37573 4.49723 4.52100 4.57090 4.69409 4.77064 4.85244 4.98570 5.03629 5.11238 5.24810 5.31700 5.35002 5.35371 5.41582 5.48598 5.64523 5.68222 5.71318 5.83576 5.94173 6.09380 6.11166 6.14357 6.25594 6.62589 6.91881 7.01986 7.48052 7.57114 7.83606 7.96345 8.33054 9.01205 9.15376 9.60866 11.09507 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029582 B = 0.001906 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.286339 B =14688.543479 C =15045.067576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.071 4.071 3 C -0.124 4.124 4 C -0.113 4.113 5 C -0.127 4.127 6 C -0.096 4.096 7 C -0.091 4.091 8 C 0.008 3.992 9 C 0.179 3.821 10 N -0.371 5.371 11 O 0.088 5.912 12 C 0.161 3.839 13 C 0.225 3.775 14 N -0.316 5.316 15 C -0.075 4.075 16 C 0.039 3.961 17 C 0.091 3.909 18 C -0.504 4.504 19 H 0.060 0.940 20 C 0.057 3.943 21 N -0.897 5.897 22 Si 0.896 3.104 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.285 1.285 26 N -0.251 5.251 27 N -0.095 5.095 28 N -0.440 5.440 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.189 0.811 41 H 0.040 0.960 42 H 0.039 0.961 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.678 27.781 10.532 30.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.071 4.071 3 C -0.142 4.142 4 C -0.131 4.131 5 C -0.146 4.146 6 C -0.114 4.114 7 C -0.092 4.092 8 C -0.030 4.030 9 C -0.093 4.093 10 N -0.075 5.075 11 O 0.027 5.973 12 C -0.061 4.061 13 C 0.100 3.900 14 N -0.113 5.113 15 C -0.222 4.222 16 C -0.097 4.097 17 C 0.052 3.948 18 C -0.543 4.543 19 H 0.078 0.922 20 C -0.144 4.144 21 N -0.537 5.537 22 Si 0.724 3.276 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.211 1.211 26 N -0.120 5.120 27 N -0.074 5.074 28 N -0.174 5.174 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.145 0.855 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.206 0.794 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.948 27.839 12.439 31.511 hybrid contribution 0.075 -0.567 -1.417 1.528 sum 8.024 27.272 11.023 30.490 Atomic orbital electron populations 1.20891 0.90930 1.02804 1.02953 1.19840 0.96243 0.92540 0.98482 1.21022 0.94313 0.97358 1.01477 1.21183 0.94290 0.98170 0.99459 1.21144 1.00027 0.92365 1.01016 1.21119 0.93247 0.98652 0.98414 1.19396 0.93730 0.93173 1.02879 1.18925 1.01946 0.95767 0.86365 1.25586 0.87551 0.96185 1.00012 1.74620 1.21648 1.18967 0.92306 1.85319 1.37560 1.49466 1.24925 1.28416 0.84045 0.95751 0.97932 1.20030 1.02976 0.76607 0.90356 1.47000 1.36725 1.10327 1.17273 1.23462 1.03773 0.95939 0.99064 1.23109 0.99452 0.94718 0.92396 1.17774 0.93598 0.89182 0.94246 1.21071 0.98430 0.97086 1.37693 0.92170 1.24973 0.95083 0.98740 0.95620 1.69948 1.13486 1.29766 1.40493 0.86454 0.80697 0.82849 0.77572 1.19678 1.20954 1.21079 1.75133 1.09214 1.12448 1.15171 1.78384 1.20908 0.95056 1.13005 1.71897 1.29591 1.16130 0.99771 0.90651 0.91194 0.91456 0.85972 0.86012 0.85855 0.85471 0.87410 0.87746 0.84196 0.84277 0.79407 0.94159 0.94300 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 9.60 36.00 0.35 -0.58 16 2 C -0.07 -0.63 5.88 -104.63 -0.62 -1.24 16 3 C -0.12 -0.98 9.70 -39.58 -0.38 -1.36 16 4 C -0.11 -0.84 10.05 -39.58 -0.40 -1.23 16 5 C -0.13 -0.99 10.05 -39.58 -0.40 -1.39 16 6 C -0.10 -0.84 9.68 -39.58 -0.38 -1.22 16 7 C -0.09 -0.84 5.12 -104.63 -0.54 -1.38 16 8 C 0.01 0.08 5.48 -29.04 -0.16 -0.08 16 9 C 0.18 2.19 7.45 -156.37 -1.17 1.03 16 10 N -0.37 -4.73 12.16 30.90 0.38 -4.36 16 11 O 0.09 1.09 11.31 18.09 0.20 1.30 16 12 C 0.16 1.90 7.89 -13.06 -0.10 1.80 16 13 C 0.22 2.12 7.08 -5.19 -0.04 2.08 16 14 N -0.32 -4.85 3.43 -62.44 -0.21 -5.06 16 15 C -0.08 -1.25 11.49 -17.05 -0.20 -1.44 16 16 C 0.04 0.86 6.44 -82.77 -0.53 0.33 16 17 C 0.09 2.30 5.55 -29.04 -0.16 2.14 16 18 C -0.50 -14.27 9.09 -34.44 -0.31 -14.58 16 19 H 0.06 1.74 7.74 -52.49 -0.41 1.34 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.90 -26.26 13.29 55.43 0.74 -25.52 16 22 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 23 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 N -0.25 -5.87 12.40 33.29 0.41 -5.46 16 27 N -0.10 -1.89 12.93 60.35 0.78 -1.11 16 28 N -0.44 -5.78 11.55 -9.87 -0.11 -5.89 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.53 6.03 -51.93 -0.31 0.22 16 31 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 32 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 34 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 35 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.11 0.93 8.05 -51.93 -0.42 0.51 16 37 H 0.10 0.86 6.16 -51.93 -0.32 0.54 16 38 H 0.14 0.67 8.07 -51.93 -0.42 0.25 16 39 H 0.14 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.19 2.27 8.06 -52.48 -0.42 1.85 16 41 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.04 0.97 8.12 -51.93 -0.42 0.55 16 43 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 379.19 15.07 5.71 5.71 Total: -1.00 -35.71 379.19 -7.49 -43.20 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: -5.24 Total: -4.04 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -5.13 Total: -15.62 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 1.98 Total: -47.40 kcal Atomic # 8 Polarization: 1.09 SS G_CDS: 0.20 Total: 1.30 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.71 -7.49 -43.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603243248.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 234.063 kcal (2) G-P(sol) polarization free energy of solvation -35.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 198.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 190.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds