Wall clock time and date at job start Sat Apr 11 2020 05:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38260 * 119.99559 * 2 1 4 4 C 1.38212 * 119.99650 * 179.71963 * 3 2 1 5 5 C 1.38255 * 120.00300 * 0.28729 * 4 3 2 6 6 C 1.38216 * 119.99744 * 359.97134 * 5 4 3 7 7 C 1.38208 * 120.00322 * 180.21766 * 2 1 3 8 8 C 1.50699 * 120.00214 * 0.06609 * 7 2 1 9 9 C 1.50698 * 109.47457 * 85.16406 * 8 7 2 10 10 N 1.29947 * 126.29152 * 269.69325 * 9 8 7 11 11 O 1.21299 * 110.25063 * 179.84219 * 10 9 8 12 12 C 1.33648 * 109.80961 * 0.42501 * 11 10 9 13 13 C 1.50703 * 126.54988 * 179.71683 * 12 11 10 14 14 N 1.46498 * 109.47194 * 270.02659 * 13 12 11 15 15 C 1.35307 * 125.86849 * 124.99906 * 14 13 12 16 16 C 1.35357 * 106.17799 * 179.97438 * 15 14 13 17 17 C 1.50696 * 126.75426 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.46964 * 125.00146 * 17 16 15 19 19 H 1.08002 * 119.99640 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99556 * 179.97438 * 18 17 16 21 21 N 1.31508 * 120.00567 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99481 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47124 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.46879 * 120.00118 * 22 20 18 25 25 H 1.48499 * 109.46943 * 240.00202 * 22 20 18 26 26 N 1.33779 * 106.49214 * 0.02562 * 16 15 14 27 27 N 1.28640 * 108.88468 * 359.73603 * 26 16 15 28 28 N 1.31123 * 106.89910 * 359.73761 * 12 11 10 29 29 H 1.09000 * 109.46985 * 89.99836 * 1 2 3 30 30 H 1.09000 * 109.47001 * 209.99377 * 1 2 3 31 31 H 1.08998 * 109.47342 * 329.99390 * 1 2 3 32 32 H 1.08002 * 120.00476 * 0.02562 * 3 2 1 33 33 H 1.07999 * 119.99941 * 180.25946 * 4 3 2 34 34 H 1.08005 * 120.00230 * 179.97438 * 5 4 3 35 35 H 1.08002 * 119.99734 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.47287 * 205.17377 * 8 7 2 37 37 H 1.09006 * 109.46739 * 325.17067 * 8 7 2 38 38 H 1.09001 * 109.46796 * 30.02739 * 13 12 11 39 39 H 1.09000 * 109.46929 * 150.02016 * 13 12 11 40 40 H 1.08004 * 126.91371 * 0.02562 * 15 14 13 41 41 H 1.08996 * 109.46973 * 245.00299 * 17 16 15 42 42 H 1.08995 * 109.46944 * 5.00039 * 17 16 15 43 43 H 0.97002 * 120.00366 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0059 5 6 4.2717 0.0002 0.0057 6 6 3.5806 -1.1968 0.0003 7 6 2.1981 -1.1969 -0.0045 8 6 1.4447 -2.5020 -0.0110 9 6 1.0912 -2.8711 -1.4287 10 7 0.0044 -2.5427 -2.0608 11 8 0.0224 -2.9909 -3.1878 12 6 1.1528 -3.6761 -3.3847 13 6 1.5595 -4.3931 -4.6463 14 7 1.0734 -5.7744 -4.6013 15 6 0.2982 -6.3728 -5.5351 16 6 0.0888 -7.6365 -5.0978 17 6 -0.7172 -8.7073 -5.7869 18 6 0.1360 -9.9352 -5.9753 19 1 1.1593 -9.9398 -5.6300 20 6 -0.3904 -11.0529 -6.5874 21 7 -1.6369 -11.0478 -7.0064 22 14 0.6670 -12.5752 -6.8202 23 1 2.0215 -12.3269 -6.2644 24 1 0.0448 -13.7229 -6.1125 25 1 0.7749 -12.8861 -8.2683 26 7 0.7371 -7.7477 -3.9329 27 7 1.3145 -6.6288 -3.6693 28 7 1.8402 -3.6057 -2.2703 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3634 0.8899 0.5139 32 1 1.6582 2.1327 0.0004 33 1 4.1203 2.1328 0.0101 34 1 5.3517 0.0002 0.0099 35 1 4.1207 -2.1321 -0.0002 36 1 2.0681 -3.2836 0.4233 37 1 0.5319 -2.3975 0.5755 38 1 1.1286 -3.8841 -5.5084 39 1 2.6463 -4.3929 -4.7300 40 1 -0.0771 -5.9313 -6.4465 41 1 -1.5851 -8.9578 -5.1770 42 1 -1.0493 -8.3429 -6.7590 43 1 -2.0070 -11.8340 -7.4373 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603243248.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:33 Heat of formation + Delta-G solvation = 167.362008 kcal Electronic energy + Delta-G solvation = -27356.355547 eV Core-core repulsion = 23406.304794 eV Total energy + Delta-G solvation = -3950.050754 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -46.82819 -44.10571 -40.57926 -37.42393 -36.68710 -35.39426 -34.55010 -33.46710 -32.94905 -32.73113 -29.79766 -29.13943 -28.90596 -27.60482 -25.47439 -25.01663 -23.94303 -23.03495 -22.61542 -21.96584 -21.33237 -19.50146 -18.80919 -18.48099 -17.99736 -17.62019 -17.30434 -16.58782 -16.52557 -16.02056 -15.94067 -15.64491 -15.48337 -14.86436 -14.54241 -14.34656 -14.28677 -14.03746 -13.97185 -13.74954 -13.62376 -13.37480 -13.03685 -12.92656 -12.87814 -12.79669 -12.64917 -12.49656 -12.28926 -12.02882 -11.91090 -11.85859 -11.66402 -11.40649 -11.17912 -11.03705 -10.57111 -9.88527 -9.81695 -9.60772 -8.17294 -6.25296 -0.25489 0.27658 0.41536 0.61122 0.94668 1.41085 1.42929 1.49747 1.55737 1.69931 1.75596 2.39494 2.45881 2.71494 2.95845 3.15919 3.46144 3.63849 3.68408 3.80217 3.89180 3.98394 4.08622 4.11343 4.24213 4.28463 4.37415 4.39842 4.47503 4.56243 4.64587 4.68978 4.74968 4.76494 4.80078 4.88891 5.08270 5.24210 5.29646 5.43741 5.50753 5.55825 5.56067 5.63910 5.68765 5.79094 6.04785 6.24196 6.83529 6.92328 7.41393 7.65723 8.93615 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029582 B = 0.001906 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.286339 B =14688.543479 C =15045.067576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.131 4.131 4 C -0.116 4.116 5 C -0.133 4.133 6 C -0.110 4.110 7 C -0.103 4.103 8 C 0.008 3.992 9 C 0.176 3.824 10 N -0.384 5.384 11 O 0.085 5.915 12 C 0.161 3.839 13 C 0.216 3.784 14 N -0.298 5.298 15 C -0.031 4.031 16 C -0.010 4.010 17 C 0.101 3.899 18 C -0.521 4.521 19 H 0.045 0.955 20 C 0.008 3.992 21 N -0.926 5.926 22 Si 0.960 3.040 23 H -0.274 1.274 24 H -0.280 1.280 25 H -0.270 1.270 26 N -0.303 5.303 27 N -0.115 5.115 28 N -0.463 5.463 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.140 0.860 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.129 0.871 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.199 0.801 39 H 0.166 0.834 40 H 0.242 0.758 41 H 0.006 0.994 42 H 0.041 0.959 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.934 29.929 9.530 32.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.149 4.149 4 C -0.133 4.133 5 C -0.151 4.151 6 C -0.128 4.128 7 C -0.104 4.104 8 C -0.030 4.030 9 C -0.097 4.097 10 N -0.090 5.090 11 O 0.025 5.975 12 C -0.061 4.061 13 C 0.094 3.906 14 N -0.095 5.095 15 C -0.180 4.180 16 C -0.147 4.147 17 C 0.062 3.938 18 C -0.560 4.560 19 H 0.063 0.937 20 C -0.190 4.190 21 N -0.567 5.567 22 Si 0.785 3.215 23 H -0.199 1.199 24 H -0.206 1.206 25 H -0.196 1.196 26 N -0.170 5.170 27 N -0.093 5.093 28 N -0.197 5.197 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.157 0.843 33 H 0.163 0.837 34 H 0.159 0.841 35 H 0.147 0.853 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.216 0.784 39 H 0.183 0.817 40 H 0.258 0.742 41 H 0.024 0.976 42 H 0.059 0.941 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.225 30.016 11.457 33.426 hybrid contribution -0.283 -1.067 -1.079 1.544 sum 8.942 28.948 10.378 32.026 Atomic orbital electron populations 1.20856 0.90555 1.03449 1.02327 1.20030 0.96727 0.92849 0.98885 1.21310 0.94838 0.97721 1.01006 1.21512 0.94316 0.99048 0.98460 1.21426 1.01089 0.92152 1.00444 1.21271 0.93251 0.99348 0.98910 1.19436 0.94041 0.93089 1.03835 1.19030 1.02488 0.96270 0.85234 1.26017 0.87218 0.95657 1.00813 1.74613 1.22058 1.19664 0.92621 1.85292 1.37761 1.49621 1.24816 1.28823 0.83617 0.95404 0.98296 1.20884 1.05015 0.73380 0.91293 1.47332 1.34798 1.11758 1.15575 1.23956 1.00724 0.93768 0.99509 1.22741 1.01920 0.96545 0.93511 1.17416 0.92634 0.89758 0.93982 1.21314 0.98165 0.98816 1.37679 0.93698 1.25766 0.96310 1.01622 0.95307 1.70037 1.14789 1.30781 1.41053 0.85471 0.78763 0.79116 0.78113 1.19862 1.20551 1.19567 1.75035 1.10829 1.14677 1.16505 1.78257 1.21474 0.95070 1.14508 1.71909 1.30495 1.16757 1.00549 0.91821 0.91490 0.89908 0.84253 0.83695 0.84059 0.85311 0.87089 0.87013 0.78382 0.81658 0.74221 0.97603 0.94107 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.73 9.60 71.24 0.68 -1.04 16 2 C -0.08 -1.43 5.88 -19.87 -0.12 -1.55 16 3 C -0.13 -1.86 9.70 22.27 0.22 -1.64 16 4 C -0.12 -1.48 10.05 22.27 0.22 -1.26 16 5 C -0.13 -1.86 10.05 22.27 0.22 -1.64 16 6 C -0.11 -1.85 9.68 22.27 0.22 -1.63 16 7 C -0.10 -1.87 5.12 -19.87 -0.10 -1.97 16 8 C 0.01 0.15 5.48 29.10 0.16 0.31 16 9 C 0.18 4.22 7.45 138.46 1.03 5.25 16 10 N -0.38 -9.57 12.16 -60.32 -0.73 -10.30 16 11 O 0.09 1.98 11.31 74.79 0.85 2.82 16 12 C 0.16 3.46 7.89 88.38 0.70 4.16 16 13 C 0.22 3.21 7.08 85.63 0.61 3.81 16 14 N -0.30 -8.35 3.43 -351.46 -1.20 -9.55 16 15 C -0.03 -0.93 11.49 83.49 0.96 0.03 16 16 C -0.01 -0.44 6.44 41.60 0.27 -0.18 16 17 C 0.10 5.27 5.55 29.10 0.16 5.43 16 18 C -0.52 -30.22 9.09 25.60 0.23 -29.99 16 19 H 0.04 2.68 7.74 -2.91 -0.02 2.65 16 20 C 0.01 0.47 5.46 84.66 0.46 0.93 16 21 N -0.93 -54.86 13.29 21.45 0.28 -54.57 16 22 Si 0.96 45.21 29.54 68.60 2.03 47.23 16 23 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 24 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 26 N -0.30 -14.43 12.40 -48.60 -0.60 -15.03 16 27 N -0.11 -4.50 12.93 37.02 0.48 -4.02 16 28 N -0.46 -11.71 11.55 -303.20 -3.50 -15.21 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.07 1.01 6.03 -2.39 -0.01 1.00 16 31 H 0.08 0.93 8.09 -2.39 -0.02 0.91 16 32 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 33 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 34 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 35 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 36 H 0.11 1.95 8.05 -2.39 -0.02 1.93 16 37 H 0.11 1.87 6.16 -2.38 -0.01 1.86 16 38 H 0.20 0.65 8.07 -2.39 -0.02 0.63 16 39 H 0.17 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.24 4.51 8.06 -2.91 -0.02 4.49 16 41 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.04 2.06 8.12 -2.39 -0.02 2.04 16 43 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -81.52 379.19 4.56 -76.96 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: 1.05 Total: 2.65 kcal Atomic # 6 Polarization: -26.89 SS G_CDS: 5.92 Total: -20.97 kcal Atomic # 7 Polarization: -103.42 SS G_CDS: -5.28 Total: -108.69 kcal Atomic # 8 Polarization: 1.98 SS G_CDS: 0.85 Total: 2.82 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -81.52 4.56 -76.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603243248.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 244.321 kcal (2) G-P(sol) polarization free energy of solvation -81.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds