Wall clock time and date at job start Sat Apr 11 2020 05:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 113.99940 * 2 1 4 4 C 1.53009 * 109.47169 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47238 * 64.99772 * 4 3 2 6 6 C 1.46496 * 120.00129 * 270.00499 * 5 4 3 7 7 C 1.50699 * 109.46959 * 269.99625 * 6 5 4 8 8 H 1.08000 * 119.99828 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00072 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99921 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00141 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46864 * 89.99751 * 11 9 7 13 13 H 1.48493 * 109.47201 * 210.00143 * 11 9 7 14 14 H 1.48501 * 109.47118 * 330.00109 * 11 9 7 15 15 C 1.34777 * 119.99525 * 90.00006 * 5 4 3 16 16 O 1.21283 * 120.00463 * 0.02562 * 15 5 4 17 17 C 1.50700 * 119.99675 * 179.72583 * 15 5 4 18 18 H 1.08999 * 115.55021 * 325.85687 * 17 15 5 19 19 C 1.53001 * 117.50246 * 111.53244 * 17 15 5 20 20 C 1.53006 * 117.49748 * 180.19159 * 17 15 5 21 21 H 1.08997 * 117.49619 * 145.01930 * 20 17 15 22 22 C 1.50690 * 117.49981 * 0.02562 * 20 17 15 23 23 C 1.38267 * 119.99857 * 299.99922 * 22 20 17 24 24 C 1.38209 * 120.07047 * 180.02562 * 23 22 20 25 25 C 1.38256 * 120.07387 * 359.97438 * 24 23 22 26 26 C 1.38370 * 119.99741 * 359.97438 * 25 24 23 27 27 F 1.35098 * 120.03469 * 180.02562 * 26 25 24 28 28 C 1.38364 * 120.00422 * 119.73024 * 22 20 17 29 29 F 1.35105 * 120.03330 * 359.96807 * 28 22 20 30 30 H 1.08994 * 109.46962 * 299.99814 * 1 2 3 31 31 H 1.09005 * 109.46845 * 59.99625 * 1 2 3 32 32 H 1.09004 * 109.47142 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47641 * 60.00312 * 3 2 1 34 34 H 1.08997 * 109.47748 * 300.00028 * 3 2 1 35 35 H 1.09000 * 109.46757 * 305.00209 * 4 3 2 36 36 H 1.09001 * 109.46821 * 185.00072 * 4 3 2 37 37 H 1.08995 * 109.47364 * 30.00213 * 6 5 4 38 38 H 1.09002 * 109.47090 * 149.99764 * 6 5 4 39 39 H 0.96997 * 119.99946 * 179.97438 * 10 9 7 40 40 H 1.08997 * 117.50129 * 214.98017 * 19 17 15 41 41 H 1.09005 * 117.49617 * 359.97438 * 19 17 15 42 42 H 1.08001 * 119.96031 * 0.02562 * 23 22 20 43 43 H 1.08001 * 119.96764 * 179.97438 * 24 23 22 44 44 H 1.07998 * 120.00290 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1052 -0.8921 -1.3427 7 6 5.5010 -1.2978 -0.9449 8 1 6.2195 -0.5460 -0.6537 9 6 5.8603 -2.6289 -0.9517 10 7 4.9851 -3.5445 -1.3058 11 14 7.5902 -3.1320 -0.4579 12 1 7.6338 -3.3839 1.0049 13 1 7.9725 -4.3690 -1.1849 14 1 8.5394 -2.0427 -0.8011 15 6 4.2615 1.3338 -2.3217 16 8 4.1547 2.5396 -2.2471 17 6 4.7203 0.6962 -3.6078 18 1 5.3316 -0.1994 -3.4966 19 6 3.7705 0.7590 -4.8057 20 6 5.0335 1.6237 -4.7837 21 1 5.8504 1.3380 -5.4463 22 6 4.8601 3.1048 -4.5670 23 6 3.6215 3.6125 -4.2208 24 6 3.4607 4.9707 -4.0222 25 6 4.5380 5.8247 -4.1687 26 6 5.7791 5.3197 -4.5141 27 9 6.8325 6.1534 -4.6571 28 6 5.9415 3.9561 -4.7090 29 9 7.1535 3.4601 -5.0414 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6887 1.8464 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.8514 0.5682 0.8409 36 1 3.9785 2.1765 0.0889 37 1 3.3852 -1.3629 -0.6735 38 1 3.9120 -1.2114 -2.3668 39 1 5.2380 -4.4809 -1.3109 40 1 3.7571 -0.0951 -5.4827 41 1 2.8136 1.2612 -4.6634 42 1 2.7788 2.9469 -4.1054 43 1 2.4923 5.3655 -3.7522 44 1 4.4110 6.8859 -4.0137 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610387441.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:38 Heat of formation + Delta-G solvation = -122.706912 kcal Electronic energy + Delta-G solvation = -30419.545830 eV Core-core repulsion = 25973.934807 eV Total energy + Delta-G solvation = -4445.611023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 3.32 seconds Orbital eigenvalues (eV) -50.42557 -49.51889 -41.49706 -39.76136 -38.67210 -37.28492 -36.48020 -34.54700 -31.83637 -31.27841 -31.03125 -28.84568 -27.22866 -25.76498 -25.18144 -24.68537 -23.69287 -23.01484 -21.74867 -19.81113 -19.02139 -18.57422 -18.41420 -17.89530 -17.65297 -17.30172 -17.23312 -16.99465 -16.52893 -16.29902 -16.06062 -15.95715 -15.71160 -15.62337 -15.31616 -14.99251 -14.85961 -14.26214 -13.96180 -13.76260 -13.55353 -13.42236 -13.30066 -13.23193 -12.93812 -12.74945 -12.71446 -12.59399 -12.41058 -12.13920 -12.07752 -11.92509 -11.66329 -11.60970 -11.46150 -10.76724 -10.59571 -10.44704 -9.63067 -9.39618 -9.22149 -8.17315 -6.31585 0.08599 0.12544 1.39211 1.41555 1.50369 1.65339 2.30112 2.43142 2.51067 2.80333 2.97822 3.09003 3.12551 3.36891 3.55089 3.72016 3.74076 3.93522 3.98702 4.11493 4.19190 4.26163 4.30831 4.36923 4.45573 4.56613 4.59775 4.66798 4.77274 4.85057 4.88343 4.91995 4.96726 4.98065 5.05497 5.08848 5.11933 5.30853 5.36073 5.48630 5.69133 5.90502 5.91888 6.11862 6.33857 6.63601 6.87305 7.34823 7.45926 8.87534 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009870 B = 0.004305 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.316104 B = 6502.785124 C = 8313.402527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.411 6.411 3 C 0.059 3.941 4 C 0.117 3.883 5 N -0.587 5.587 6 C 0.264 3.736 7 C -0.548 4.548 8 H 0.046 0.954 9 C 0.025 3.975 10 N -0.916 5.916 11 Si 0.950 3.050 12 H -0.275 1.275 13 H -0.278 1.278 14 H -0.276 1.276 15 C 0.539 3.461 16 O -0.566 6.566 17 C -0.185 4.185 18 H 0.118 0.882 19 C -0.114 4.114 20 C -0.099 4.099 21 H 0.124 0.876 22 C -0.051 4.051 23 C -0.035 4.035 24 C -0.101 4.101 25 C -0.121 4.121 26 C 0.032 3.968 27 F -0.145 7.145 28 C 0.041 3.959 29 F -0.147 7.147 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.025 0.975 38 H 0.026 0.974 39 H 0.267 0.733 40 H 0.129 0.871 41 H 0.115 0.885 42 H 0.137 0.863 43 H 0.168 0.832 44 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.305 13.600 -5.045 17.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.331 6.331 3 C -0.018 4.018 4 C -0.006 4.006 5 N -0.316 5.316 6 C 0.143 3.857 7 C -0.586 4.586 8 H 0.064 0.936 9 C -0.175 4.175 10 N -0.555 5.555 11 Si 0.776 3.224 12 H -0.201 1.201 13 H -0.204 1.204 14 H -0.201 1.201 15 C 0.328 3.672 16 O -0.449 6.449 17 C -0.206 4.206 18 H 0.136 0.864 19 C -0.151 4.151 20 C -0.118 4.118 21 H 0.142 0.858 22 C -0.052 4.052 23 C -0.053 4.053 24 C -0.119 4.119 25 C -0.139 4.139 26 C 0.012 3.988 27 F -0.124 7.124 28 C 0.021 3.979 29 F -0.126 7.126 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.111 0.889 37 H 0.043 0.957 38 H 0.044 0.956 39 H 0.076 0.924 40 H 0.147 0.853 41 H 0.133 0.867 42 H 0.155 0.845 43 H 0.186 0.814 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -9.192 13.834 -5.007 17.348 hybrid contribution 1.694 -0.714 0.492 1.903 sum -7.498 13.120 -4.516 15.772 Atomic orbital electron populations 1.22861 0.79982 1.03232 1.00696 1.88018 1.21164 1.28421 1.95489 1.22899 0.93179 0.84687 1.01050 1.21463 0.93222 0.99181 0.86774 1.48068 1.63676 1.08826 1.11017 1.18952 0.95130 0.74541 0.97110 1.21726 0.98278 0.92347 1.46275 0.93608 1.25563 1.00601 0.96404 0.94974 1.70014 1.35853 1.01432 1.48209 0.85683 0.80503 0.77719 0.78517 1.20053 1.20374 1.20089 1.19752 0.76352 0.86158 0.84923 1.90599 1.56330 1.13955 1.83974 1.22311 1.07108 1.02163 0.89028 0.86439 1.23240 0.93640 1.01571 0.96670 1.20994 1.02210 0.88246 1.00343 0.85779 1.18932 0.92718 0.93239 1.00345 1.20912 0.95668 0.95892 0.92841 1.21270 0.99853 0.92120 0.98641 1.21286 0.89538 1.02733 1.00353 1.17825 0.86392 0.85706 1.08851 1.91451 1.56176 1.70766 1.94024 1.17714 0.81377 0.91298 1.07505 1.91431 1.42517 1.88194 1.90470 0.92615 0.93530 0.89565 0.90405 0.93263 0.90995 0.88896 0.95653 0.95629 0.92408 0.85280 0.86692 0.84515 0.81437 0.81436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 11.01 113.37 1.25 1.91 16 2 O -0.41 -13.73 9.53 -148.98 -1.42 -15.15 16 3 C 0.06 1.73 6.28 71.99 0.45 2.19 16 4 C 0.12 4.13 5.81 86.38 0.50 4.63 16 5 N -0.59 -24.06 2.42 -826.16 -2.00 -26.06 16 6 C 0.26 12.73 4.62 85.63 0.40 13.13 16 7 C -0.55 -29.08 9.07 25.60 0.23 -28.85 16 8 H 0.05 2.50 7.81 -2.91 -0.02 2.48 16 9 C 0.03 1.34 5.46 84.65 0.46 1.80 16 10 N -0.92 -50.98 13.29 21.45 0.28 -50.70 16 11 Si 0.95 42.84 29.54 68.60 2.03 44.86 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 13 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 14 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 15 C 0.54 20.86 7.31 87.66 0.64 21.50 16 16 O -0.57 -21.44 11.28 -3.04 -0.03 -21.47 16 17 C -0.19 -6.61 4.80 -11.54 -0.06 -6.66 16 18 H 0.12 4.83 6.99 -2.39 -0.02 4.81 16 19 C -0.11 -3.01 9.58 30.62 0.29 -2.72 16 20 C -0.10 -3.02 5.79 -11.52 -0.07 -3.09 16 21 H 0.12 3.62 7.87 -2.39 -0.02 3.60 16 22 C -0.05 -1.57 4.37 -19.83 -0.09 -1.66 16 23 C -0.03 -0.90 6.17 22.27 0.14 -0.77 16 24 C -0.10 -2.13 10.04 22.27 0.22 -1.91 16 25 C -0.12 -2.72 10.02 22.31 0.22 -2.49 16 26 C 0.03 0.95 7.31 22.41 0.16 1.12 16 27 F -0.15 -4.48 17.18 44.97 0.77 -3.71 16 28 C 0.04 1.35 7.25 22.41 0.16 1.52 16 29 F -0.15 -5.29 16.53 44.97 0.74 -4.55 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.09 1.92 8.14 -2.38 -0.02 1.91 16 33 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.07 2.71 8.07 -2.39 -0.02 2.69 16 36 H 0.09 3.12 7.42 -2.39 -0.02 3.11 16 37 H 0.03 1.34 7.11 -2.39 -0.02 1.33 16 38 H 0.03 1.28 6.65 -2.39 -0.02 1.27 16 39 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 40 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16 41 H 0.11 2.66 6.19 -2.38 -0.01 2.65 16 42 H 0.14 3.26 5.78 -2.91 -0.02 3.25 16 43 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 44 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -64.80 373.16 6.33 -58.47 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 1.03 Total: 18.65 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: 4.93 Total: -0.35 kcal Atomic # 7 Polarization: -75.04 SS G_CDS: -1.71 Total: -76.75 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -1.45 Total: -36.62 kcal Atomic # 9 Polarization: -9.77 SS G_CDS: 1.52 Total: -8.26 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -64.80 6.33 -58.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610387441.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.240 kcal (2) G-P(sol) polarization free energy of solvation -64.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.32 seconds