Wall clock time and date at job start Sat Apr 11 2020 05:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42907 * 113.99963 * 2 1 4 4 C 1.52996 * 109.47231 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47371 * 64.99903 * 4 3 2 6 6 C 1.46499 * 120.00240 * 270.00168 * 5 4 3 7 7 C 1.50704 * 109.46950 * 270.00040 * 6 5 4 8 8 H 1.07995 * 119.99860 * 359.97438 * 7 6 5 9 9 C 1.37874 * 119.99876 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99971 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99896 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47307 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46832 * 120.00176 * 11 9 7 14 14 H 1.48498 * 109.47676 * 240.00234 * 11 9 7 15 15 C 1.34778 * 119.99886 * 89.99834 * 5 4 3 16 16 O 1.21583 * 120.00079 * 0.02562 * 15 5 4 17 17 N 1.34771 * 120.00194 * 180.02562 * 15 5 4 18 18 C 1.39001 * 120.00404 * 180.02562 * 17 15 5 19 19 N 1.29246 * 124.95865 * 0.02562 * 18 17 15 20 20 C 1.32784 * 117.67630 * 179.97438 * 19 18 17 21 21 C 1.34409 * 113.22011 * 0.02562 * 20 19 18 22 22 S 1.70892 * 124.95841 * 180.02562 * 18 17 15 23 23 C 1.51032 * 125.20599 * 179.72213 * 21 20 19 24 24 C 1.53118 * 108.68566 * 344.37465 * 23 21 20 25 25 C 1.53151 * 109.12387 * 48.92962 * 24 23 21 26 26 C 1.52136 * 124.09827 * 180.02562 * 20 19 18 27 27 H 1.09002 * 109.46971 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46933 * 299.99301 * 1 2 3 29 29 H 1.09003 * 109.47686 * 60.00154 * 1 2 3 30 30 H 1.08995 * 109.47227 * 59.99891 * 3 2 1 31 31 H 1.09006 * 109.46844 * 300.00015 * 3 2 1 32 32 H 1.09003 * 109.47248 * 304.99946 * 4 3 2 33 33 H 1.09001 * 109.47037 * 184.99802 * 4 3 2 34 34 H 1.08999 * 109.46959 * 29.99704 * 6 5 4 35 35 H 1.09000 * 109.47043 * 149.99785 * 6 5 4 36 36 H 0.97005 * 120.00130 * 179.97438 * 10 9 7 37 37 H 0.97003 * 120.00094 * 0.02562 * 17 15 5 38 38 H 1.09004 * 109.61699 * 103.94895 * 23 21 20 39 39 H 1.09001 * 109.61504 * 224.47284 * 23 21 20 40 40 H 1.09000 * 109.34953 * 289.11317 * 24 23 21 41 41 H 1.09000 * 109.61330 * 168.90254 * 24 23 21 42 42 H 1.09000 * 109.47872 * 169.83627 * 25 24 23 43 43 H 1.09001 * 109.48089 * 49.80402 * 25 24 23 44 44 H 1.09001 * 109.59329 * 282.20696 * 26 20 19 45 45 H 1.08998 * 109.59694 * 42.49853 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2528 6 6 4.1052 -0.8920 -1.3428 7 6 5.5010 -1.2976 -0.9449 8 1 6.2198 -0.5457 -0.6545 9 6 5.8604 -2.6287 -0.9517 10 7 4.9853 -3.5443 -1.3059 11 14 7.5907 -3.1315 -0.4592 12 1 8.3764 -1.9216 -0.1070 13 1 7.5272 -4.0389 0.7146 14 1 8.2439 -3.8336 -1.5930 15 6 4.2614 1.3338 -2.3218 16 8 4.1543 2.5426 -2.2470 17 7 4.6660 0.7633 -3.4739 18 6 4.9613 1.5567 -4.5763 19 7 4.8818 2.8465 -4.6031 20 6 5.1997 3.4606 -5.7366 21 6 5.5669 2.6134 -6.7134 22 16 5.4823 0.9693 -6.0941 23 6 5.9760 3.0189 -8.1095 24 6 5.5368 4.4662 -8.3485 25 6 5.9868 5.3289 -7.1658 26 6 5.1588 4.9691 -5.9300 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6885 1.8464 -0.8900 32 1 3.8514 0.5683 0.8409 33 1 3.9784 2.1766 0.0889 34 1 3.3853 -1.3628 -0.6734 35 1 3.9120 -1.2113 -2.3669 36 1 5.2382 -4.4808 -1.3111 37 1 4.7511 -0.2011 -3.5337 38 1 7.0591 2.9474 -8.2089 39 1 5.4953 2.3641 -8.8364 40 1 4.4509 4.5044 -8.4356 41 1 5.9912 4.8396 -9.2662 42 1 5.8405 6.3816 -7.4073 43 1 7.0420 5.1456 -6.9629 44 1 4.1275 5.2913 -6.0741 45 1 5.5761 5.4616 -5.0518 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610540747.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:45 Heat of formation + Delta-G solvation = -46.522967 kcal Electronic energy + Delta-G solvation = -27560.251921 eV Core-core repulsion = 23704.077619 eV Total energy + Delta-G solvation = -3856.174302 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.76581 -40.69096 -38.86727 -37.55002 -36.61996 -35.45338 -34.60337 -31.76183 -31.36030 -29.72657 -28.87120 -27.20321 -25.85264 -24.87319 -24.47224 -23.74308 -22.66001 -21.02833 -20.03198 -19.15589 -18.59331 -18.32458 -17.77945 -17.28004 -17.01065 -16.77577 -16.40229 -16.15707 -15.85716 -15.60367 -15.51621 -14.91173 -14.85014 -14.69769 -14.35569 -14.00345 -13.76217 -13.68288 -13.46530 -13.18343 -12.96826 -12.83672 -12.77975 -12.77751 -12.65528 -12.20335 -11.95353 -11.75335 -11.70048 -11.68449 -11.42336 -11.39473 -11.33627 -10.65235 -10.58856 -10.25768 -10.14348 -9.56186 -8.93527 -8.21229 -6.37442 -0.20830 -0.03207 0.72059 1.38729 1.42117 1.52316 1.66659 1.73613 2.28976 2.39527 2.73226 2.92648 3.08185 3.45282 3.86424 4.03067 4.08274 4.13135 4.17745 4.27291 4.35592 4.44596 4.51289 4.53605 4.58873 4.61250 4.66984 4.81974 4.84356 4.90555 4.90847 4.96203 5.05957 5.17112 5.20133 5.24911 5.26725 5.41639 5.48113 5.56535 5.70202 5.91463 6.02686 6.28409 6.58063 6.77877 7.02823 7.34386 7.53082 8.83645 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010184 B = 0.003735 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.681149 B = 7494.930072 C = 9349.321656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.408 6.408 3 C 0.056 3.944 4 C 0.135 3.865 5 N -0.603 5.603 6 C 0.261 3.739 7 C -0.552 4.552 8 H 0.049 0.951 9 C 0.026 3.974 10 N -0.914 5.914 11 Si 0.956 3.044 12 H -0.275 1.275 13 H -0.277 1.277 14 H -0.275 1.275 15 C 0.699 3.301 16 O -0.587 6.587 17 N -0.640 5.640 18 C 0.270 3.730 19 N -0.518 5.518 20 C 0.067 3.933 21 C -0.243 4.243 22 S 0.141 5.859 23 C -0.035 4.035 24 C -0.110 4.110 25 C -0.112 4.112 26 C -0.038 4.038 27 H 0.090 0.910 28 H 0.059 0.941 29 H 0.038 0.962 30 H 0.086 0.914 31 H 0.035 0.965 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.037 0.963 35 H 0.014 0.986 36 H 0.269 0.731 37 H 0.428 0.572 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.065 0.935 44 H 0.083 0.917 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.983 12.047 -11.898 17.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.327 6.327 3 C -0.022 4.022 4 C 0.012 3.988 5 N -0.337 5.337 6 C 0.140 3.860 7 C -0.591 4.591 8 H 0.068 0.932 9 C -0.175 4.175 10 N -0.553 5.553 11 Si 0.781 3.219 12 H -0.200 1.200 13 H -0.202 1.202 14 H -0.200 1.200 15 C 0.399 3.601 16 O -0.464 6.464 17 N -0.295 5.295 18 C -0.099 4.099 19 N -0.240 5.240 20 C -0.064 4.064 21 C -0.366 4.366 22 S 0.394 5.606 23 C -0.075 4.075 24 C -0.149 4.149 25 C -0.150 4.150 26 C -0.078 4.078 27 H 0.109 0.891 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.104 0.896 31 H 0.053 0.947 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.055 0.945 35 H 0.032 0.968 36 H 0.078 0.922 37 H 0.269 0.731 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.084 0.916 41 H 0.120 0.880 42 H 0.115 0.885 43 H 0.084 0.916 44 H 0.101 0.899 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.001 11.690 -11.621 16.605 hybrid contribution 0.411 -0.354 0.857 1.015 sum -1.590 11.336 -10.763 15.713 Atomic orbital electron populations 1.22869 0.80053 1.03368 1.00526 1.87995 1.21108 1.28178 1.95469 1.22947 0.93682 0.84766 1.00775 1.21427 0.92693 0.99289 0.85426 1.47372 1.67677 1.08277 1.10388 1.19001 0.96224 0.74222 0.96561 1.21723 0.97801 0.92553 1.47005 0.93237 1.25611 1.00950 0.96229 0.94700 1.70024 1.35888 1.01584 1.47768 0.85540 0.79990 0.78074 0.78251 1.20021 1.20209 1.20022 1.16006 0.78510 0.85029 0.80597 1.90894 1.59903 1.12555 1.83060 1.42403 1.68166 1.10249 1.08647 1.23272 1.02342 0.91029 0.93305 1.66123 1.22677 1.06549 1.28620 1.21253 1.00033 0.99120 0.86013 1.26263 1.14138 0.92452 1.03717 1.83598 1.65223 1.09184 1.02550 1.20298 1.01985 0.98089 0.87101 1.21602 1.01830 0.92501 0.98960 1.21580 0.99267 1.01219 0.92887 1.20471 1.02008 0.85343 0.99931 0.89143 0.92240 0.94349 0.89639 0.94679 0.89432 0.88973 0.94526 0.96798 0.92191 0.73128 0.89050 0.89087 0.91571 0.87980 0.88512 0.91600 0.89863 0.91218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 11.01 113.37 1.25 1.99 16 2 O -0.41 -14.83 9.53 -148.98 -1.42 -16.25 16 3 C 0.06 1.88 6.28 71.98 0.45 2.33 16 4 C 0.14 5.22 5.81 86.38 0.50 5.72 16 5 N -0.60 -27.26 2.42 -844.19 -2.04 -29.30 16 6 C 0.26 12.96 4.75 85.63 0.41 13.36 16 7 C -0.55 -29.34 9.39 25.60 0.24 -29.10 16 8 H 0.05 2.72 7.81 -2.91 -0.02 2.69 16 9 C 0.03 1.38 5.46 84.65 0.46 1.85 16 10 N -0.91 -50.28 13.29 21.45 0.28 -49.99 16 11 Si 0.96 42.28 29.54 68.60 2.03 44.31 16 12 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 13 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 14 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 15 C 0.70 32.86 8.24 179.06 1.48 34.34 16 16 O -0.59 -29.68 14.56 -3.98 -0.06 -29.73 16 17 N -0.64 -27.77 5.27 -327.78 -1.73 -29.49 16 18 C 0.27 10.81 8.02 179.31 1.44 12.25 16 19 N -0.52 -21.40 8.61 -187.25 -1.61 -23.02 16 20 C 0.07 2.14 6.77 42.00 0.28 2.42 16 21 C -0.24 -6.53 6.38 24.91 0.16 -6.37 16 22 S 0.14 4.26 23.20 -56.49 -1.31 2.95 16 23 C -0.03 -0.58 6.27 29.99 0.19 -0.40 16 24 C -0.11 -1.44 5.94 30.68 0.18 -1.26 16 25 C -0.11 -1.73 5.88 30.66 0.18 -1.55 16 26 C -0.04 -0.91 6.29 30.33 0.19 -0.72 16 27 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.09 3.36 8.07 -2.39 -0.02 3.34 16 33 H 0.09 3.46 7.42 -2.39 -0.02 3.44 16 34 H 0.04 1.97 7.11 -2.39 -0.02 1.95 16 35 H 0.01 0.72 6.36 -2.39 -0.02 0.71 16 36 H 0.27 13.94 8.31 -92.70 -0.77 13.17 16 37 H 0.43 18.19 6.55 -92.71 -0.61 17.58 16 38 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.07 0.92 8.11 -2.39 -0.02 0.90 16 41 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.07 1.06 8.11 -2.39 -0.02 1.04 16 44 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -70.67 381.64 1.95 -68.72 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: 0.40 Total: 26.95 kcal Atomic # 6 Polarization: 27.46 SS G_CDS: 7.41 Total: 34.87 kcal Atomic # 7 Polarization: -126.71 SS G_CDS: -5.10 Total: -131.81 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -1.48 Total: -45.98 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Atomic # 16 Polarization: 4.26 SS G_CDS: -1.31 Total: 2.95 kcal Total: -70.67 1.95 -68.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610540747.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.196 kcal (2) G-P(sol) polarization free energy of solvation -70.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds