Wall clock time and date at job start Sat Apr 11 2020 05:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34663 * 125.19064 * 2 1 4 4 H 0.97010 * 124.64967 * 0.04793 * 3 2 1 5 5 C 1.38017 * 110.71097 * 180.23818 * 3 2 1 6 6 C 1.39145 * 133.04345 * 179.76388 * 5 3 2 7 7 C 1.37776 * 119.94838 * 180.02562 * 6 5 3 8 8 C 1.38723 * 120.63587 * 0.02562 * 7 6 5 9 9 C 1.37799 * 120.27116 * 359.97438 * 8 7 6 10 10 C 1.39190 * 119.67324 * 0.02562 * 9 8 7 11 11 C 1.37854 * 125.18678 * 179.83053 * 2 1 3 12 12 C 1.41726 * 126.91254 * 0.03172 * 11 2 1 13 13 O 1.21398 * 119.99845 * 94.57831 * 12 11 2 14 14 C 1.50701 * 120.00118 * 274.57489 * 12 11 2 15 15 N 1.46510 * 109.47064 * 174.67504 * 14 12 11 16 16 C 1.35313 * 125.86614 * 125.32816 * 15 14 12 17 17 C 1.35349 * 106.17192 * 180.12048 * 16 15 14 18 18 C 1.50707 * 126.74992 * 179.85044 * 17 16 15 19 19 N 1.46497 * 109.46619 * 94.71247 * 18 17 16 20 20 C 1.36938 * 119.99581 * 179.72657 * 19 18 17 21 21 H 1.07997 * 120.00238 * 0.27470 * 20 19 18 22 22 C 1.38821 * 120.00055 * 180.27358 * 20 19 18 23 23 N 1.31616 * 119.99861 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99865 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.46965 * 89.99828 * 24 22 20 26 26 H 1.48497 * 109.47060 * 210.00202 * 24 22 20 27 27 H 1.48505 * 109.46980 * 329.99621 * 24 22 20 28 28 N 1.33767 * 106.49888 * 359.58936 * 17 16 15 29 29 N 1.28640 * 108.88394 * 0.26647 * 28 17 16 30 30 H 1.08999 * 109.47367 * 275.09934 * 1 2 3 31 31 H 1.09005 * 109.46928 * 35.09642 * 1 2 3 32 32 H 1.08999 * 109.47603 * 155.09491 * 1 2 3 33 33 H 1.07999 * 120.02213 * 0.02562 * 6 5 3 34 34 H 1.08004 * 119.67959 * 179.97438 * 7 6 5 35 35 H 1.07996 * 119.86108 * 180.02562 * 8 7 6 36 36 H 1.08000 * 120.16167 * 180.02562 * 9 8 7 37 37 H 1.09001 * 109.46931 * 54.67805 * 14 12 11 38 38 H 1.08998 * 109.47226 * 294.67151 * 14 12 11 39 39 H 1.08003 * 126.91439 * 359.96865 * 16 15 14 40 40 H 1.08994 * 109.46841 * 334.71282 * 18 17 16 41 41 H 1.08997 * 109.46987 * 214.71233 * 18 17 16 42 42 H 0.96996 * 120.00494 * 359.97438 * 19 18 17 43 43 H 0.97005 * 119.99933 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2831 1.1005 0.0000 4 1 1.9488 2.0112 0.0007 5 6 3.6194 0.7554 -0.0054 6 6 4.7932 1.5026 -0.0118 7 6 6.0145 0.8648 -0.0167 8 6 6.0886 -0.5204 -0.0159 9 6 4.9373 -1.2776 -0.0096 10 6 3.6970 -0.6458 -0.0046 11 6 2.3014 -1.1266 0.0033 12 6 1.8658 -2.4753 0.0067 13 8 1.7596 -3.0814 -1.0398 14 6 1.5345 -3.1569 1.3093 15 7 0.9920 -4.4906 1.0384 16 6 1.4596 -5.6547 1.5455 17 6 0.6728 -6.6310 1.0359 18 6 0.7886 -8.1108 1.2969 19 7 -0.1126 -8.4858 2.3893 20 6 -0.1834 -9.7898 2.8014 21 1 0.4284 -10.5409 2.3241 22 6 -1.0415 -10.1462 3.8328 23 7 -1.1098 -11.3996 4.2285 24 14 -2.1002 -8.8471 4.6579 25 1 -3.3993 -8.7421 3.9463 26 1 -2.3402 -9.2295 6.0726 27 1 -1.4027 -7.5369 4.6109 28 7 -0.2314 -6.0236 0.2594 29 7 -0.0151 -4.7557 0.2821 30 1 -0.3634 0.0913 1.0236 31 1 -0.3633 0.8409 -0.5909 32 1 -0.3634 -0.9321 -0.4327 33 1 4.7470 2.5816 -0.0129 34 1 6.9229 1.4490 -0.0221 35 1 7.0525 -1.0073 -0.0194 36 1 4.9970 -2.3560 -0.0085 37 1 0.7948 -2.5668 1.8503 38 1 2.4382 -3.2479 1.9119 39 1 2.2944 -5.7799 2.2193 40 1 1.8149 -8.3516 1.5737 41 1 0.5165 -8.6610 0.3962 42 1 -0.6618 -7.8111 2.8183 43 1 -1.7098 -11.6488 4.9489 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000640790127.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:15 Heat of formation + Delta-G solvation = 120.324652 kcal Electronic energy + Delta-G solvation = -27558.107578 eV Core-core repulsion = 23606.017132 eV Total energy + Delta-G solvation = -3952.090446 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.28823 -42.60910 -40.34615 -38.10149 -37.05323 -35.51381 -33.82449 -33.50990 -32.11723 -31.94657 -30.95706 -29.74271 -28.02612 -27.73955 -24.83333 -24.35211 -23.35400 -22.84777 -22.33522 -22.09088 -20.12049 -19.75116 -18.81752 -18.32292 -17.78576 -17.48502 -16.72220 -16.44499 -16.22778 -16.04746 -15.94018 -15.71092 -15.62530 -15.35711 -14.95791 -14.89205 -14.64301 -14.40572 -14.03763 -13.91832 -13.68958 -13.53658 -13.37409 -13.25493 -12.89590 -12.55503 -12.48531 -12.46578 -12.11780 -12.02467 -11.86252 -11.80444 -11.56247 -11.01683 -10.83960 -10.68585 -10.23374 -9.31288 -9.25833 -8.73412 -8.01212 -5.34847 0.00784 0.54249 0.59879 0.62502 1.20391 1.35823 1.38597 1.41828 1.44755 1.49470 1.97224 2.49111 2.81658 2.89328 3.28724 3.34742 3.50441 3.69249 3.75243 3.83062 3.98590 4.03335 4.08207 4.15914 4.21950 4.28418 4.28635 4.41307 4.50609 4.54893 4.59784 4.71913 4.83947 4.88535 4.99500 5.07742 5.12095 5.14272 5.42617 5.53406 5.57463 5.58383 5.65314 5.76218 6.09025 6.22106 6.27595 6.48375 7.06446 7.49679 7.81095 8.02026 9.19895 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020187 B = 0.002185 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.668783 B =12810.589613 C =13304.843894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.165 3.835 3 N -0.558 5.558 4 H 0.436 0.564 5 C 0.074 3.926 6 C -0.118 4.118 7 C -0.108 4.108 8 C -0.133 4.133 9 C -0.108 4.108 10 C -0.084 4.084 11 C -0.308 4.308 12 C 0.445 3.555 13 O -0.469 6.469 14 C 0.063 3.937 15 N -0.283 5.283 16 C -0.018 4.018 17 C -0.044 4.044 18 C 0.241 3.759 19 N -0.751 5.751 20 C -0.231 4.231 21 H 0.066 0.934 22 C -0.060 4.060 23 N -0.980 5.980 24 Si 0.953 3.047 25 H -0.287 1.287 26 H -0.289 1.289 27 H -0.256 1.256 28 N -0.299 5.299 29 N -0.097 5.097 30 H 0.113 0.887 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.150 0.850 34 H 0.154 0.846 35 H 0.142 0.858 36 H 0.117 0.883 37 H 0.161 0.839 38 H 0.179 0.821 39 H 0.236 0.764 40 H 0.069 0.931 41 H 0.031 0.969 42 H 0.363 0.637 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.796 39.267 -5.194 42.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.048 3.952 3 N -0.160 5.160 4 H 0.278 0.722 5 C -0.031 4.031 6 C -0.138 4.138 7 C -0.127 4.127 8 C -0.152 4.152 9 C -0.127 4.127 10 C -0.088 4.088 11 C -0.317 4.317 12 C 0.320 3.680 13 O -0.342 6.342 14 C -0.057 4.057 15 N -0.077 5.077 16 C -0.169 4.169 17 C -0.182 4.182 18 C 0.113 3.887 19 N -0.397 5.397 20 C -0.362 4.362 21 H 0.084 0.916 22 C -0.252 4.252 23 N -0.630 5.630 24 Si 0.781 3.219 25 H -0.214 1.214 26 H -0.215 1.215 27 H -0.181 1.181 28 N -0.167 5.167 29 N -0.076 5.076 30 H 0.132 0.868 31 H 0.121 0.879 32 H 0.091 0.909 33 H 0.168 0.832 34 H 0.172 0.828 35 H 0.160 0.840 36 H 0.135 0.865 37 H 0.179 0.821 38 H 0.196 0.804 39 H 0.252 0.748 40 H 0.086 0.914 41 H 0.049 0.951 42 H 0.196 0.804 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 13.686 39.488 -6.699 42.326 hybrid contribution -0.174 -0.074 1.042 1.059 sum 13.512 39.414 -5.657 42.048 Atomic orbital electron populations 1.20828 0.84858 1.05110 1.05862 1.20806 0.94212 0.84517 0.95639 1.41232 1.03644 1.09049 1.62085 0.72249 1.18376 0.85253 0.93421 1.06099 1.20446 0.89046 1.00456 1.03875 1.21212 0.97792 0.94439 0.99248 1.21260 0.98237 0.94514 1.01142 1.20635 0.90994 0.99975 1.01106 1.18864 0.91531 0.92886 1.05523 1.19156 0.93464 0.92943 1.26165 1.20445 0.71632 0.86875 0.89061 1.90708 1.39880 1.67435 1.36155 1.23139 1.05093 0.78212 0.99268 1.47253 1.20973 1.09034 1.30435 1.23966 1.04816 0.83569 1.04518 1.22265 0.96739 0.98343 1.00834 1.18892 0.94691 0.84797 0.90301 1.42663 1.50314 1.05974 1.40775 1.19055 1.18912 0.85229 1.13024 0.91601 1.25425 1.01509 0.98023 1.00236 1.69865 1.42851 1.17717 1.32615 0.85435 0.79073 0.79811 0.77591 1.21400 1.21498 1.18073 1.75038 1.23153 0.98843 1.19630 1.78181 1.05673 1.10571 1.13157 0.86832 0.87944 0.90923 0.83232 0.82804 0.83979 0.86512 0.82122 0.80351 0.74807 0.91369 0.95078 0.80410 0.93243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.25 71.24 0.73 0.01 16 2 C 0.16 1.88 7.15 42.03 0.30 2.18 16 3 N -0.56 -4.55 5.94 -174.82 -1.04 -5.58 16 4 H 0.44 0.38 8.96 -92.70 -0.83 -0.45 16 5 C 0.07 0.94 7.25 38.90 0.28 1.22 16 6 C -0.12 -1.07 10.07 22.38 0.23 -0.85 16 7 C -0.11 -0.98 10.01 22.28 0.22 -0.76 16 8 C -0.13 -1.60 10.03 22.28 0.22 -1.38 16 9 C -0.11 -1.78 10.09 22.39 0.23 -1.55 16 10 C -0.08 -1.46 6.35 -20.06 -0.13 -1.58 16 11 C -0.31 -5.32 5.74 -20.03 -0.12 -5.44 16 12 C 0.45 9.37 6.21 26.55 0.16 9.53 16 13 O -0.47 -14.92 16.53 -3.40 -0.06 -14.97 16 14 C 0.06 0.97 6.81 85.63 0.58 1.56 16 15 N -0.28 -7.59 3.16 -351.44 -1.11 -8.70 16 16 C -0.02 -0.48 11.50 83.49 0.96 0.48 16 17 C -0.04 -1.64 6.61 41.60 0.28 -1.36 16 18 C 0.24 10.05 6.82 85.64 0.58 10.64 16 19 N -0.75 -37.52 5.40 -347.18 -1.87 -39.40 16 20 C -0.23 -13.62 10.47 84.04 0.88 -12.74 16 21 H 0.07 4.16 8.06 -2.91 -0.02 4.13 16 22 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 23 N -0.98 -63.81 13.97 21.65 0.30 -63.51 16 24 Si 0.95 47.45 27.74 68.60 1.90 49.36 16 25 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 26 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 27 H -0.26 -11.62 6.52 99.48 0.65 -10.97 16 28 N -0.30 -12.50 12.41 -48.60 -0.60 -13.11 16 29 N -0.10 -3.48 12.24 37.02 0.45 -3.03 16 30 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.10 0.26 8.14 -2.38 -0.02 0.24 16 32 H 0.07 0.85 7.75 -2.39 -0.02 0.83 16 33 H 0.15 0.47 8.06 -2.91 -0.02 0.45 16 34 H 0.15 0.54 8.06 -2.91 -0.02 0.52 16 35 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 36 H 0.12 1.90 8.06 -2.91 -0.02 1.87 16 37 H 0.16 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.18 1.30 8.07 -2.39 -0.02 1.28 16 39 H 0.24 4.09 8.06 -2.91 -0.02 4.06 16 40 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.36 17.88 5.52 -92.71 -0.51 17.37 16 43 H 0.26 16.00 8.31 -92.70 -0.77 15.23 16 Total: -1.00 -91.56 376.66 3.53 -88.03 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -0.33 Total: 14.16 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 5.88 Total: -3.24 kcal Atomic # 7 Polarization: -129.45 SS G_CDS: -3.87 Total: -133.32 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.06 Total: -14.97 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 1.90 Total: 49.36 kcal Total: -91.56 3.53 -88.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000640790127.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.353 kcal (2) G-P(sol) polarization free energy of solvation -91.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds