Wall clock time and date at job start Sat Apr 11 2020 05:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31647 * 119.78054 * 2 1 4 4 C 1.33795 * 121.22353 * 179.97438 * 3 2 1 5 5 N 1.32852 * 132.41653 * 180.02562 * 4 3 2 6 6 C 1.32723 * 109.74507 * 180.02562 * 5 4 3 7 7 N 1.31075 * 109.62513 * 359.97438 * 6 5 4 8 8 N 1.36640 * 120.42658 * 0.02562 * 4 3 2 9 9 C 1.36516 * 120.18780 * 359.97438 * 8 4 3 10 10 N 1.37713 * 120.64425 * 179.97438 * 9 8 4 11 11 C 1.46896 * 111.00016 * 0.02562 * 10 9 8 12 12 C 1.50701 * 109.47050 * 179.97438 * 11 10 9 13 13 C 1.38302 * 119.93101 * 89.99407 * 12 11 10 14 14 C 1.38106 * 120.07107 * 180.02562 * 13 12 11 15 15 C 1.38879 * 119.92571 * 359.97438 * 14 13 12 16 16 O 1.35753 * 120.06541 * 180.02562 * 15 14 13 17 17 C 1.34831 * 117.00188 * 354.46649 * 16 15 14 18 18 H 1.08005 * 119.99910 * 5.05947 * 17 16 15 19 19 C 1.38653 * 120.00325 * 185.05796 * 17 16 15 20 20 N 1.31556 * 119.99986 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99759 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.47054 * 90.00219 * 21 19 17 23 23 H 1.48502 * 109.47026 * 209.99915 * 21 19 17 24 24 H 1.48498 * 109.47177 * 330.00281 * 21 19 17 25 25 C 1.38871 * 119.86478 * 0.27488 * 15 14 13 26 26 C 1.38102 * 119.92968 * 359.49233 * 25 15 14 27 27 C 1.38157 * 118.70686 * 0.25982 * 9 8 4 28 28 C 1.50707 * 120.48696 * 179.72412 * 27 9 8 29 29 H 1.09002 * 109.47474 * 89.99691 * 1 2 3 30 30 H 1.08996 * 109.47423 * 209.99464 * 1 2 3 31 31 H 1.09002 * 109.47411 * 329.99997 * 1 2 3 32 32 H 1.08007 * 125.19356 * 179.97438 * 6 5 4 33 33 H 1.00895 * 111.00409 * 236.04940 * 10 9 8 34 34 H 1.09000 * 109.47303 * 59.99485 * 11 10 9 35 35 H 1.09000 * 109.46921 * 299.99067 * 11 10 9 36 36 H 1.08001 * 119.96675 * 0.02562 * 13 12 11 37 37 H 1.07996 * 120.03520 * 179.97438 * 14 13 12 38 38 H 0.97002 * 119.99567 * 179.97438 * 20 19 17 39 39 H 1.08001 * 120.03616 * 179.72161 * 25 15 14 40 40 H 1.08003 * 119.96565 * 180.22670 * 26 25 15 41 41 H 1.09004 * 109.46889 * 89.99752 * 28 27 9 42 42 H 1.08999 * 109.46700 * 209.99189 * 28 27 9 43 43 H 1.08998 * 109.46825 * 329.99625 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1609 1.1426 0.0000 4 6 3.4984 1.1763 0.0005 5 7 4.3695 2.1794 0.0011 6 6 5.6067 1.6988 0.0009 7 7 5.5700 0.3885 0.0007 8 7 4.2198 0.0159 0.0005 9 6 3.5801 -1.1901 0.0005 10 7 4.2979 -2.3654 0.0000 11 6 5.7427 -2.0999 0.0001 12 6 6.4935 -3.4066 0.0002 13 6 6.8373 -4.0049 -1.1984 14 6 7.5249 -5.2026 -1.2017 15 6 7.8716 -5.8058 0.0003 16 8 8.5480 -6.9829 0.0003 17 6 8.7525 -7.5714 -1.1954 18 1 8.4566 -7.0668 -2.1033 19 6 9.3427 -8.8244 -1.2595 20 7 9.5427 -9.3984 -2.4262 21 14 9.8552 -9.6968 0.3107 22 1 8.7279 -10.5270 0.8062 23 1 11.0264 -10.5669 0.0340 24 1 10.2185 -8.6903 1.3403 25 6 7.5204 -5.2051 1.2021 26 6 6.8371 -4.0050 1.1987 27 6 2.1987 -1.2086 -0.0050 28 6 1.4515 -2.5173 -0.0114 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5137 31 1 -0.3634 0.8900 0.5138 32 1 6.5065 2.2961 0.0008 33 1 4.0372 -2.9481 -0.7813 34 1 6.0072 -1.5292 0.8903 35 1 6.0071 -1.5286 -0.8897 36 1 6.5678 -3.5351 -2.1327 37 1 7.7927 -5.6696 -2.1379 38 1 9.9560 -10.2748 -2.4710 39 1 7.7847 -5.6740 2.1384 40 1 6.5669 -3.5354 2.1330 41 1 1.2674 -2.8356 1.0148 42 1 0.5005 -2.3901 -0.5285 43 1 2.0463 -3.2727 -0.5250 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000740868437.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:24 Heat of formation + Delta-G solvation = 152.520126 kcal Electronic energy + Delta-G solvation = -27996.472968 eV Core-core repulsion = 24045.778622 eV Total energy + Delta-G solvation = -3950.694346 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.15381 -39.73591 -39.32787 -37.92751 -36.51211 -33.77609 -33.16275 -32.47326 -31.67207 -30.42700 -29.78003 -28.97271 -27.22149 -25.86869 -24.48008 -23.31161 -22.61951 -22.23193 -21.99111 -20.64692 -18.66228 -18.08300 -17.81901 -17.53267 -17.23267 -16.68664 -15.60427 -15.14349 -14.89191 -14.85633 -14.51129 -14.38362 -14.10727 -13.93546 -13.76345 -13.59576 -13.24500 -13.06126 -12.97835 -12.81391 -12.60504 -12.42676 -12.29176 -12.24692 -12.14985 -11.78416 -11.46567 -11.08355 -10.90486 -10.80551 -10.37205 -10.26153 -10.19910 -10.00986 -9.63980 -9.51979 -8.98638 -8.43099 -8.24621 -7.51433 -6.53214 -4.20297 0.24179 0.51229 1.56318 1.91169 1.98287 2.33222 3.05347 3.14058 3.17769 3.18512 3.28341 3.32814 3.81069 4.13950 4.30028 4.34647 4.45260 4.51911 4.70950 4.77128 4.94241 4.98261 5.04719 5.10396 5.14648 5.25600 5.28114 5.36579 5.48594 5.53529 5.55752 5.61938 5.75803 5.85212 5.96613 5.98019 6.10984 6.17134 6.36461 6.41760 6.50541 6.62806 6.88898 7.07598 7.12728 7.32602 7.45462 7.66467 7.76520 7.90783 8.81387 9.41940 10.53951 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020822 B = 0.002283 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.415996 B =12260.260205 C =12947.331751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.254 3.746 3 N -0.492 5.492 4 C 0.468 3.532 5 N -0.539 5.539 6 C 0.250 3.750 7 N -0.341 5.341 8 N -0.353 5.353 9 C 0.406 3.594 10 N -0.593 5.593 11 C 0.113 3.887 12 C -0.192 4.192 13 C -0.061 4.061 14 C -0.221 4.221 15 C 0.167 3.833 16 O -0.212 6.212 17 C -0.392 4.392 18 H 0.107 0.893 19 C 0.065 3.935 20 N -0.875 5.875 21 Si 0.906 3.094 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.259 1.259 25 C -0.193 4.193 26 C -0.049 4.049 27 C -0.240 4.240 28 C -0.085 4.085 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.229 0.771 33 H 0.383 0.617 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.134 0.866 38 H 0.281 0.719 39 H 0.119 0.881 40 H 0.113 0.887 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.347 15.611 4.214 22.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.093 3.907 3 N -0.212 5.212 4 C 0.108 3.892 5 N -0.273 5.273 6 C -0.051 4.051 7 N -0.172 5.172 8 N -0.137 5.137 9 C 0.185 3.815 10 N -0.224 5.224 11 C -0.013 4.013 12 C -0.194 4.194 13 C -0.080 4.080 14 C -0.241 4.241 15 C 0.113 3.887 16 O -0.117 6.117 17 C -0.467 4.467 18 H 0.125 0.875 19 C -0.139 4.139 20 N -0.512 5.512 21 Si 0.731 3.269 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.183 1.183 25 C -0.213 4.213 26 C -0.068 4.068 27 C -0.252 4.252 28 C -0.143 4.143 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.245 0.755 33 H 0.217 0.783 34 H 0.114 0.886 35 H 0.086 0.914 36 H 0.124 0.876 37 H 0.152 0.848 38 H 0.091 0.909 39 H 0.137 0.863 40 H 0.131 0.869 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.705 15.961 4.886 22.918 hybrid contribution 0.920 -1.045 -0.290 1.422 sum -14.785 14.916 4.596 21.498 Atomic orbital electron populations 1.20901 0.86539 1.04815 1.04352 1.21574 0.97668 0.85971 0.85474 1.67816 1.01800 1.28359 1.23232 1.22805 0.89963 0.81459 0.95013 1.70935 0.98781 1.26505 1.31037 1.26366 0.96195 0.89937 0.92635 1.78794 0.89755 1.14736 1.33904 1.49409 1.08039 1.07507 1.48743 1.19633 0.90483 0.80676 0.90702 1.57312 1.09065 1.10749 1.45272 1.21325 0.80758 0.95136 1.04041 1.19081 1.08363 0.98223 0.93719 1.20647 0.96650 0.94486 0.96249 1.21236 1.06173 0.97838 0.98805 1.19159 0.89729 0.86384 0.93378 1.83578 1.63611 1.30512 1.33973 1.20777 1.41652 1.01536 0.82773 0.87546 1.24487 0.95809 0.95394 0.98235 1.69642 1.41348 1.16521 1.23738 0.86174 0.78505 0.79622 0.82585 1.19773 1.20654 1.18318 1.20219 1.06859 0.98063 0.96127 1.20468 0.95895 0.93742 0.96649 1.20074 0.88819 0.98935 1.17416 1.20473 0.99332 0.91200 1.03289 0.88820 0.89088 0.89323 0.75463 0.78294 0.88610 0.91366 0.87568 0.84797 0.90883 0.86345 0.86934 0.90388 0.90392 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 9.39 36.01 0.34 -0.18 16 2 C 0.25 2.32 6.81 -82.29 -0.56 1.76 16 3 N -0.49 -6.27 10.38 -10.19 -0.11 -6.37 16 4 C 0.47 6.69 9.00 -323.17 -2.91 3.78 16 5 N -0.54 -7.75 11.26 -15.66 -0.18 -7.92 16 6 C 0.25 2.96 12.98 -91.96 -1.19 1.76 16 7 N -0.34 -4.49 8.59 29.26 0.25 -4.24 16 8 N -0.35 -4.67 3.73 -12.98 -0.05 -4.72 16 9 C 0.41 4.56 7.15 -152.97 -1.09 3.47 16 10 N -0.59 -6.50 5.93 -60.91 -0.36 -6.86 16 11 C 0.11 1.46 4.25 -4.98 -0.02 1.44 16 12 C -0.19 -2.93 5.40 -104.58 -0.56 -3.49 16 13 C -0.06 -1.01 9.69 -39.61 -0.38 -1.40 16 14 C -0.22 -4.46 9.17 -39.39 -0.36 -4.82 16 15 C 0.17 3.64 6.65 -39.11 -0.26 3.38 16 16 O -0.21 -5.39 8.59 0.04 0.00 -5.39 16 17 C -0.39 -10.65 9.95 30.89 0.31 -10.34 16 18 H 0.11 2.94 5.44 -52.48 -0.29 2.66 16 19 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 20 N -0.88 -24.55 13.96 55.48 0.77 -23.77 16 21 Si 0.91 21.01 28.62 -169.99 -4.86 16.14 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 25 C -0.19 -3.63 9.99 -39.40 -0.39 -4.02 16 26 C -0.05 -0.78 9.69 -39.61 -0.38 -1.17 16 27 C -0.24 -2.11 5.92 -104.27 -0.62 -2.73 16 28 C -0.08 -0.48 8.99 36.01 0.32 -0.15 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.24 6.76 -51.93 -0.35 -0.11 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.23 1.63 8.06 -52.48 -0.42 1.21 16 33 H 0.38 3.59 7.65 -39.29 -0.30 3.28 16 34 H 0.10 1.35 6.83 -51.93 -0.35 0.99 16 35 H 0.07 0.92 6.83 -51.93 -0.35 0.57 16 36 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.13 2.86 5.64 -52.49 -0.30 2.56 16 38 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 40 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 41 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.26 6.78 -51.93 -0.35 -0.09 16 43 H 0.07 0.40 6.82 -51.93 -0.35 0.05 16 LS Contribution 360.60 15.07 5.43 5.43 Total: -1.00 -32.53 360.60 -11.71 -44.23 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -4.74 Total: 4.51 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -7.87 Total: -11.04 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: 0.33 Total: -53.89 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: 0.00 Total: -5.39 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.86 Total: 16.14 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.53 -11.71 -44.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740868437.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.752 kcal (2) G-P(sol) polarization free energy of solvation -32.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds