Wall clock time and date at job start Sat Apr 11 2020 05:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31647 * 119.78054 * 2 1 4 4 C 1.33795 * 121.22353 * 179.97438 * 3 2 1 5 5 N 1.32852 * 132.41653 * 180.02562 * 4 3 2 6 6 C 1.32723 * 109.74507 * 180.02562 * 5 4 3 7 7 N 1.31075 * 109.62513 * 359.97438 * 6 5 4 8 8 N 1.36640 * 120.42658 * 0.02562 * 4 3 2 9 9 C 1.36516 * 120.18780 * 359.97438 * 8 4 3 10 10 N 1.37713 * 120.64425 * 179.97438 * 9 8 4 11 11 C 1.46896 * 111.00016 * 0.02562 * 10 9 8 12 12 C 1.50701 * 109.47050 * 179.97438 * 11 10 9 13 13 C 1.38302 * 119.93101 * 89.99407 * 12 11 10 14 14 C 1.38106 * 120.07107 * 180.02562 * 13 12 11 15 15 C 1.38879 * 119.92571 * 359.97438 * 14 13 12 16 16 O 1.35753 * 120.06541 * 180.02562 * 15 14 13 17 17 C 1.34831 * 117.00188 * 354.46649 * 16 15 14 18 18 H 1.08005 * 119.99910 * 5.05947 * 17 16 15 19 19 C 1.38653 * 120.00325 * 185.05796 * 17 16 15 20 20 N 1.31556 * 119.99986 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99759 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.47054 * 90.00219 * 21 19 17 23 23 H 1.48502 * 109.47026 * 209.99915 * 21 19 17 24 24 H 1.48498 * 109.47177 * 330.00281 * 21 19 17 25 25 C 1.38871 * 119.86478 * 0.27488 * 15 14 13 26 26 C 1.38102 * 119.92968 * 359.49233 * 25 15 14 27 27 C 1.38157 * 118.70686 * 0.25982 * 9 8 4 28 28 C 1.50707 * 120.48696 * 179.72412 * 27 9 8 29 29 H 1.09002 * 109.47474 * 89.99691 * 1 2 3 30 30 H 1.08996 * 109.47423 * 209.99464 * 1 2 3 31 31 H 1.09002 * 109.47411 * 329.99997 * 1 2 3 32 32 H 1.08007 * 125.19356 * 179.97438 * 6 5 4 33 33 H 1.00895 * 111.00409 * 236.04940 * 10 9 8 34 34 H 1.09000 * 109.47303 * 59.99485 * 11 10 9 35 35 H 1.09000 * 109.46921 * 299.99067 * 11 10 9 36 36 H 1.08001 * 119.96675 * 0.02562 * 13 12 11 37 37 H 1.07996 * 120.03520 * 179.97438 * 14 13 12 38 38 H 0.97002 * 119.99567 * 179.97438 * 20 19 17 39 39 H 1.08001 * 120.03616 * 179.72161 * 25 15 14 40 40 H 1.08003 * 119.96565 * 180.22670 * 26 25 15 41 41 H 1.09004 * 109.46889 * 89.99752 * 28 27 9 42 42 H 1.08999 * 109.46700 * 209.99189 * 28 27 9 43 43 H 1.08998 * 109.46825 * 329.99625 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1609 1.1426 0.0000 4 6 3.4984 1.1763 0.0005 5 7 4.3695 2.1794 0.0011 6 6 5.6067 1.6988 0.0009 7 7 5.5700 0.3885 0.0007 8 7 4.2198 0.0159 0.0005 9 6 3.5801 -1.1901 0.0005 10 7 4.2979 -2.3654 0.0000 11 6 5.7427 -2.0999 0.0001 12 6 6.4935 -3.4066 0.0002 13 6 6.8373 -4.0049 -1.1984 14 6 7.5249 -5.2026 -1.2017 15 6 7.8716 -5.8058 0.0003 16 8 8.5480 -6.9829 0.0003 17 6 8.7525 -7.5714 -1.1954 18 1 8.4566 -7.0668 -2.1033 19 6 9.3427 -8.8244 -1.2595 20 7 9.5427 -9.3984 -2.4262 21 14 9.8552 -9.6968 0.3107 22 1 8.7279 -10.5270 0.8062 23 1 11.0264 -10.5669 0.0340 24 1 10.2185 -8.6903 1.3403 25 6 7.5204 -5.2051 1.2021 26 6 6.8371 -4.0050 1.1987 27 6 2.1987 -1.2086 -0.0050 28 6 1.4515 -2.5173 -0.0114 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5137 31 1 -0.3634 0.8900 0.5138 32 1 6.5065 2.2961 0.0008 33 1 4.0372 -2.9481 -0.7813 34 1 6.0072 -1.5292 0.8903 35 1 6.0071 -1.5286 -0.8897 36 1 6.5678 -3.5351 -2.1327 37 1 7.7927 -5.6696 -2.1379 38 1 9.9560 -10.2748 -2.4710 39 1 7.7847 -5.6740 2.1384 40 1 6.5669 -3.5354 2.1330 41 1 1.2674 -2.8356 1.0148 42 1 0.5005 -2.3901 -0.5285 43 1 2.0463 -3.2727 -0.5250 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000740868437.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:22 Heat of formation + Delta-G solvation = 136.032714 kcal Electronic energy + Delta-G solvation = -27997.187916 eV Core-core repulsion = 24045.778622 eV Total energy + Delta-G solvation = -3951.409294 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -44.03231 -41.04691 -40.42893 -39.13756 -37.81793 -34.59166 -34.50515 -34.00762 -32.57204 -31.90880 -31.01720 -29.61236 -28.10095 -27.43363 -25.83374 -24.08442 -23.77922 -23.43652 -22.90754 -22.06090 -19.91063 -19.55138 -19.12778 -18.64929 -18.29676 -17.59851 -16.76522 -16.38875 -16.37678 -15.83093 -15.70113 -15.65319 -15.32002 -15.09807 -15.05319 -14.55424 -14.34834 -14.17443 -14.11395 -13.82598 -13.64109 -13.59477 -13.34618 -13.06125 -12.94692 -12.71788 -12.60481 -12.55189 -12.51018 -12.35997 -11.98493 -11.35797 -11.26298 -11.16045 -10.93476 -10.89905 -10.44005 -9.88660 -9.18213 -9.05738 -8.52668 -6.25677 -0.56585 -0.32381 0.46008 0.49937 0.72359 1.31222 1.34243 1.48686 1.50890 2.18854 2.26064 2.32905 2.39325 2.77513 2.98223 3.02767 3.11728 3.64276 3.72688 3.74421 3.79557 3.89720 4.07984 4.13957 4.21187 4.45662 4.49115 4.53676 4.70419 4.77629 4.81245 4.82852 4.87401 4.90523 5.01657 5.04571 5.16109 5.21325 5.26757 5.30518 5.43400 5.48682 5.53678 5.61508 5.71013 5.76764 5.84678 6.15423 6.48099 6.81544 6.87845 7.54201 8.58568 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020822 B = 0.002283 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.415996 B =12260.260205 C =12947.331751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.252 3.748 3 N -0.518 5.518 4 C 0.447 3.553 5 N -0.571 5.571 6 C 0.251 3.749 7 N -0.362 5.362 8 N -0.358 5.358 9 C 0.380 3.620 10 N -0.588 5.588 11 C 0.128 3.872 12 C -0.161 4.161 13 C -0.057 4.057 14 C -0.234 4.234 15 C 0.129 3.871 16 O -0.242 6.242 17 C -0.400 4.400 18 H 0.084 0.916 19 C 0.012 3.988 20 N -0.921 5.921 21 Si 0.969 3.031 22 H -0.264 1.264 23 H -0.269 1.269 24 H -0.263 1.263 25 C -0.190 4.190 26 C -0.043 4.043 27 C -0.218 4.218 28 C -0.087 4.087 29 H 0.114 0.886 30 H 0.119 0.881 31 H 0.087 0.913 32 H 0.264 0.736 33 H 0.391 0.609 34 H 0.091 0.909 35 H 0.066 0.934 36 H 0.133 0.867 37 H 0.111 0.889 38 H 0.285 0.715 39 H 0.130 0.870 40 H 0.144 0.856 41 H 0.088 0.912 42 H 0.107 0.893 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.942 16.756 5.788 25.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.094 3.906 3 N -0.239 5.239 4 C 0.087 3.913 5 N -0.306 5.306 6 C -0.049 4.049 7 N -0.193 5.193 8 N -0.143 5.143 9 C 0.160 3.840 10 N -0.220 5.220 11 C 0.002 3.998 12 C -0.163 4.163 13 C -0.075 4.075 14 C -0.253 4.253 15 C 0.080 3.920 16 O -0.149 6.149 17 C -0.476 4.476 18 H 0.101 0.899 19 C -0.187 4.187 20 N -0.561 5.561 21 Si 0.791 3.209 22 H -0.189 1.189 23 H -0.193 1.193 24 H -0.188 1.188 25 C -0.209 4.209 26 C -0.061 4.061 27 C -0.230 4.230 28 C -0.145 4.145 29 H 0.132 0.868 30 H 0.138 0.862 31 H 0.106 0.894 32 H 0.279 0.721 33 H 0.226 0.774 34 H 0.109 0.891 35 H 0.084 0.916 36 H 0.151 0.849 37 H 0.129 0.871 38 H 0.095 0.905 39 H 0.148 0.852 40 H 0.162 0.838 41 H 0.106 0.894 42 H 0.126 0.874 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.352 17.131 6.467 25.925 hybrid contribution 1.401 -1.021 -0.762 1.894 sum -16.951 16.110 5.705 24.071 Atomic orbital electron populations 1.21128 0.83186 1.06204 1.05946 1.22379 0.99600 0.85143 0.83525 1.67910 1.01333 1.30227 1.24447 1.23068 0.90675 0.81904 0.95699 1.70898 0.99803 1.27513 1.32403 1.27060 0.96655 0.89870 0.91360 1.78672 0.90159 1.15470 1.35046 1.49447 1.07965 1.07906 1.48935 1.19966 0.91319 0.80085 0.92598 1.57227 1.07550 1.10969 1.46217 1.21069 0.81922 0.93045 1.03806 1.19399 1.05816 0.98108 0.92945 1.20871 0.95441 0.93077 0.98154 1.21238 1.07224 0.99253 0.97570 1.19685 0.91078 0.86100 0.95174 1.83527 1.66412 1.32364 1.32591 1.20710 1.41885 1.01954 0.83067 0.89892 1.25269 0.96090 0.96089 1.01270 1.69724 1.43509 1.17359 1.25530 0.85238 0.78633 0.78394 0.78601 1.18921 1.19331 1.18761 1.20488 1.06342 0.98671 0.95446 1.20825 0.94447 0.92592 0.98285 1.20568 0.87981 1.00340 1.14134 1.20670 1.00264 0.89200 1.04361 0.86805 0.86239 0.89393 0.72061 0.77401 0.89091 0.91614 0.84881 0.87070 0.90512 0.85233 0.83817 0.89353 0.87419 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 9.39 71.24 0.67 0.06 16 2 C 0.25 3.92 6.81 42.83 0.29 4.21 16 3 N -0.52 -12.51 10.38 -186.14 -1.93 -14.44 16 4 C 0.45 12.43 9.00 261.61 2.35 14.78 16 5 N -0.57 -16.19 11.26 -203.47 -2.29 -18.48 16 6 C 0.25 5.70 12.98 180.82 2.35 8.05 16 7 N -0.36 -9.09 8.59 -61.35 -0.53 -9.61 16 8 N -0.36 -9.00 3.73 -194.99 -0.73 -9.73 16 9 C 0.38 7.64 7.15 131.99 0.94 8.58 16 10 N -0.59 -11.20 5.93 -346.61 -2.06 -13.25 16 11 C 0.13 2.97 4.25 85.56 0.36 3.33 16 12 C -0.16 -4.50 5.40 -19.84 -0.11 -4.61 16 13 C -0.06 -1.79 9.69 22.25 0.22 -1.58 16 14 C -0.23 -9.61 9.17 22.39 0.21 -9.40 16 15 C 0.13 5.75 6.65 22.58 0.15 5.90 16 16 O -0.24 -12.69 8.59 -22.78 -0.20 -12.89 16 17 C -0.40 -22.86 9.95 67.92 0.68 -22.18 16 18 H 0.08 4.95 5.44 -2.91 -0.02 4.93 16 19 C 0.01 0.66 5.49 84.83 0.47 1.12 16 20 N -0.92 -53.82 13.96 21.61 0.30 -53.51 16 21 Si 0.97 44.31 28.62 68.60 1.96 46.27 16 22 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 24 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 25 C -0.19 -6.90 9.99 22.39 0.22 -6.67 16 26 C -0.04 -1.26 9.69 22.25 0.22 -1.05 16 27 C -0.22 -3.15 5.92 -19.64 -0.12 -3.27 16 28 C -0.09 -0.60 8.99 71.24 0.64 0.04 16 29 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.12 0.02 6.76 -2.39 -0.02 0.00 16 31 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.26 3.35 8.06 -2.91 -0.02 3.33 16 33 H 0.39 6.13 7.65 -89.70 -0.69 5.44 16 34 H 0.09 2.31 6.83 -2.39 -0.02 2.30 16 35 H 0.07 1.62 6.83 -2.39 -0.02 1.60 16 36 H 0.13 3.48 8.06 -2.91 -0.02 3.45 16 37 H 0.11 5.07 5.64 -2.91 -0.02 5.05 16 38 H 0.29 15.29 8.31 -92.71 -0.77 14.52 16 39 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 40 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 41 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 42 H 0.11 0.14 6.78 -2.39 -0.02 0.12 16 43 H 0.07 0.53 6.82 -2.39 -0.02 0.51 16 Total: -1.00 -75.51 360.60 4.47 -71.03 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.40 Total: 17.29 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: 9.54 Total: -2.67 kcal Atomic # 7 Polarization: -111.80 SS G_CDS: -7.23 Total: -119.03 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -0.20 Total: -12.89 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.96 Total: 46.27 kcal Total: -75.51 4.47 -71.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740868437.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.066 kcal (2) G-P(sol) polarization free energy of solvation -75.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds