Wall clock time and date at job start Sat Apr 11 2020 05:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31299 * 1 3 3 Si 1.86798 * 119.99619 * 2 1 4 4 H 1.48497 * 109.46956 * 239.99513 * 3 2 1 5 5 H 1.48495 * 109.47539 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47178 * 119.99977 * 3 2 1 7 7 C 1.38982 * 120.00133 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99952 * 180.02562 * 7 2 1 9 9 N 1.37326 * 120.00317 * 359.97438 * 7 2 1 10 10 C 1.36486 * 126.07264 * 180.02562 * 9 7 2 11 11 C 1.35681 * 107.50928 * 180.02562 * 10 9 7 12 12 N 1.40592 * 126.08240 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00151 * 179.97438 * 12 11 10 14 14 O 1.21303 * 119.99996 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00369 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47466 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.47060 * 180.02562 * 16 15 13 18 18 N 1.46499 * 109.46840 * 180.02562 * 17 16 15 19 19 C 1.36037 * 126.34815 * 264.68633 * 18 17 16 20 20 N 1.30107 * 110.10182 * 179.87780 * 19 18 17 21 21 C 1.35783 * 109.64164 * 0.39107 * 20 19 18 22 22 C 1.39747 * 133.60288 * 179.76274 * 21 20 19 23 23 C 1.36600 * 119.88568 * 180.02562 * 22 21 20 24 24 C 1.38771 * 120.67065 * 359.97394 * 23 22 21 25 25 C 1.37856 * 120.45260 * 0.04742 * 24 23 22 26 26 C 1.38055 * 126.35328 * 84.99901 * 18 17 16 27 27 C 1.40646 * 107.83260 * 0.26343 * 11 10 9 28 28 N 1.30908 * 108.38960 * 359.55373 * 27 11 10 29 29 H 0.97000 * 119.99962 * 359.97438 * 1 2 3 30 30 H 1.07998 * 126.24677 * 0.04439 * 10 9 7 31 31 H 0.97003 * 120.00209 * 0.02562 * 12 11 10 32 32 H 1.09002 * 109.47120 * 59.99760 * 15 13 12 33 33 H 1.08998 * 109.46862 * 300.00562 * 15 13 12 34 34 H 1.09002 * 109.47153 * 59.99773 * 16 15 13 35 35 H 1.09001 * 109.46832 * 299.99964 * 16 15 13 36 36 H 1.09001 * 109.47194 * 299.99650 * 17 16 15 37 37 H 1.08992 * 109.47399 * 59.99823 * 17 16 15 38 38 H 1.08003 * 124.94734 * 0.02562 * 19 18 17 39 39 H 1.08001 * 120.05734 * 359.97438 * 22 21 20 40 40 H 1.08001 * 119.66102 * 179.97438 * 23 22 21 41 41 H 1.08004 * 119.77568 * 180.02562 * 24 23 22 42 42 H 1.07994 * 120.15578 * 180.02562 * 25 24 23 43 43 H 1.08004 * 125.80129 * 179.70436 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.1007 1.6964 -1.2124 5 1 1.2819 2.7465 -0.0006 6 1 3.1006 1.6965 1.2125 7 6 2.0079 -1.2036 0.0005 8 1 3.0880 -1.2036 0.0010 9 7 1.3214 -2.3929 0.0016 10 6 1.8750 -3.6404 0.0027 11 6 0.8579 -4.5385 0.0029 12 7 0.9892 -5.9382 0.0035 13 6 -0.1099 -6.7182 0.0042 14 8 -1.2125 -6.2125 0.0039 15 6 0.0308 -8.2186 0.0053 16 6 -1.3578 -8.8611 0.0053 17 6 -1.2148 -10.3844 0.0071 18 7 -2.5444 -10.9996 0.0065 19 6 -3.2346 -11.4290 1.0972 20 7 -4.3832 -11.9210 0.7344 21 6 -4.5046 -11.8486 -0.6160 22 6 -5.5053 -12.2265 -1.5153 23 6 -5.3311 -12.0187 -2.8541 24 6 -4.1678 -11.4340 -3.3343 25 6 -3.1671 -11.0536 -2.4658 26 6 -3.3267 -11.2565 -1.1017 27 6 -0.3511 -3.8199 -0.0042 28 7 -0.0714 -2.5410 0.0011 29 1 -0.4850 0.8400 0.0004 30 1 2.9302 -3.8708 0.0036 31 1 1.8709 -6.3427 0.0041 32 1 0.5764 -8.5317 0.8955 33 1 0.5763 -8.5330 -0.8844 34 1 -1.9030 -8.5480 -0.8851 35 1 -1.9036 -8.5467 0.8949 36 1 -0.6688 -10.6992 -0.8822 37 1 -0.6698 -10.6971 0.8977 38 1 -2.8817 -11.3681 2.1162 39 1 -6.4145 -12.6828 -1.1525 40 1 -6.1066 -12.3126 -3.5459 41 1 -4.0454 -11.2761 -4.3957 42 1 -2.2639 -10.5985 -2.8446 43 1 -1.3417 -4.2501 -0.0104 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747430389.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:39 Heat of formation + Delta-G solvation = 118.934557 kcal Electronic energy + Delta-G solvation = -26990.974530 eV Core-core repulsion = 23038.823804 eV Total energy + Delta-G solvation = -3952.150725 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.32948 -39.97714 -38.74697 -37.57825 -35.66191 -34.24405 -33.20423 -32.68329 -30.53002 -30.21676 -29.50865 -28.23067 -26.86798 -24.82772 -23.46470 -22.98874 -22.16863 -21.01302 -20.67928 -20.13174 -19.43782 -17.69927 -17.46345 -17.32922 -16.29363 -16.04583 -15.85914 -15.67574 -15.44810 -15.17700 -14.43664 -14.41518 -14.04006 -13.93075 -13.78008 -13.51967 -13.22741 -13.03925 -12.72668 -12.39829 -12.17902 -12.06038 -11.79273 -11.69088 -11.58444 -11.45200 -11.26543 -11.11615 -10.99015 -10.58631 -10.55944 -10.19100 -10.13352 -9.24510 -9.18795 -8.83202 -8.56265 -8.30361 -8.08865 -6.73548 -6.57846 -4.25553 0.76945 1.33062 2.34229 2.61670 2.78845 3.01511 3.02655 3.07079 3.54028 3.64673 3.70431 3.85193 4.07790 4.27058 4.31289 4.38841 4.53637 4.69054 4.78052 4.82569 4.83718 4.96415 5.00178 5.01209 5.21548 5.23343 5.24557 5.33313 5.44267 5.53067 5.73460 5.95203 6.01000 6.20677 6.22421 6.32065 6.33513 6.42741 6.66740 6.86949 6.91104 6.92654 7.08946 7.21627 7.67022 7.83117 8.14052 8.25644 8.60477 8.82073 9.35168 9.64358 10.38069 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024935 B = 0.001748 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.668098 B =16015.865896 C =16413.051476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.324 4.324 8 H 0.116 0.884 9 N -0.142 5.142 10 C -0.085 4.085 11 C -0.062 4.062 12 N -0.625 5.625 13 C 0.495 3.505 14 O -0.536 6.536 15 C -0.132 4.132 16 C -0.121 4.121 17 C 0.110 3.890 18 N -0.489 5.489 19 C 0.262 3.738 20 N -0.500 5.500 21 C 0.042 3.958 22 C -0.066 4.066 23 C -0.130 4.130 24 C -0.104 4.104 25 C -0.107 4.107 26 C 0.049 3.951 27 C -0.034 4.034 28 N -0.261 5.261 29 H 0.276 0.724 30 H 0.145 0.855 31 H 0.397 0.603 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.213 0.787 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.122 0.878 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.016 -22.875 -2.454 23.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.456 4.456 8 H 0.133 0.867 9 N 0.090 4.910 10 C -0.236 4.236 11 C -0.168 4.168 12 N -0.267 5.267 13 C 0.281 3.719 14 O -0.413 6.413 15 C -0.173 4.173 16 C -0.159 4.159 17 C -0.012 4.012 18 N -0.179 5.179 19 C -0.023 4.023 20 N -0.219 5.219 21 C -0.076 4.076 22 C -0.085 4.085 23 C -0.150 4.150 24 C -0.124 4.124 25 C -0.128 4.128 26 C -0.060 4.060 27 C -0.209 4.209 28 N -0.092 5.092 29 H 0.086 0.914 30 H 0.162 0.838 31 H 0.229 0.771 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.116 0.884 38 H 0.229 0.771 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.140 0.860 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -1.961 -21.446 -1.912 21.620 hybrid contribution 2.091 0.094 -0.396 2.130 sum 0.130 -21.352 -2.307 21.477 Atomic orbital electron populations 1.70208 1.06132 1.28133 1.35150 1.25648 0.95716 1.00291 0.95493 0.85891 0.79144 0.79626 0.79466 1.19158 1.20114 1.19151 1.19823 0.91628 0.80572 1.53596 0.86666 1.44549 1.04053 1.03310 1.39065 1.21255 0.96807 0.85415 1.20106 1.17283 0.94262 0.81387 1.23837 1.42534 1.08216 1.04592 1.71377 1.20284 0.84562 0.88550 0.78494 1.90623 1.25855 1.75045 1.49781 1.21484 0.98534 0.93010 1.04286 1.21700 0.97078 0.91865 1.05301 1.21920 0.80789 0.93787 1.04663 1.45469 1.16593 1.49931 1.05858 1.25365 0.88146 0.95291 0.93542 1.70455 1.17494 1.22910 1.11021 1.19089 0.94804 1.03290 0.90396 1.20018 0.97383 0.99487 0.91660 1.20641 0.98222 1.01290 0.94893 1.20902 0.93287 0.98814 0.99365 1.19996 1.00583 1.03200 0.89036 1.18907 0.93510 1.03889 0.89662 1.24106 0.98035 0.90760 1.07995 1.78262 0.90109 1.15101 1.25718 0.91375 0.83751 0.77067 0.88873 0.88976 0.90244 0.90123 0.89208 0.88414 0.77080 0.85534 0.85461 0.85322 0.86009 0.80808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.54 11.81 55.49 0.66 -20.88 16 2 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 3 Si 0.94 18.81 29.55 -169.99 -5.02 13.79 16 4 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 7 C -0.32 -8.52 10.25 -14.81 -0.15 -8.68 16 8 H 0.12 2.69 7.83 -52.48 -0.41 2.28 16 9 N -0.14 -3.89 3.74 -11.41 -0.04 -3.93 16 10 C -0.08 -1.97 11.49 -16.40 -0.19 -2.15 16 11 C -0.06 -1.40 6.90 -83.84 -0.58 -1.98 16 12 N -0.62 -10.30 5.47 -10.00 -0.05 -10.36 16 13 C 0.50 7.77 7.80 -10.99 -0.09 7.68 16 14 O -0.54 -10.97 13.13 5.54 0.07 -10.89 16 15 C -0.13 -1.18 5.70 -27.89 -0.16 -1.33 16 16 C -0.12 -1.14 4.83 -26.73 -0.13 -1.27 16 17 C 0.11 0.72 6.16 -4.04 -0.02 0.70 16 18 N -0.49 -4.67 2.81 -115.80 -0.32 -5.00 16 19 C 0.26 2.55 12.49 -89.79 -1.12 1.42 16 20 N -0.50 -6.41 11.27 -12.05 -0.14 -6.55 16 21 C 0.04 0.54 7.23 -84.70 -0.61 -0.07 16 22 C -0.07 -0.71 10.05 -39.61 -0.40 -1.11 16 23 C -0.13 -1.16 9.96 -39.98 -0.40 -1.56 16 24 C -0.10 -0.92 10.03 -39.52 -0.40 -1.32 16 25 C -0.11 -1.07 10.05 -39.50 -0.40 -1.46 16 26 C 0.05 0.56 6.87 -83.99 -0.58 -0.01 16 27 C -0.03 -0.88 10.85 -17.04 -0.18 -1.07 16 28 N -0.26 -7.60 10.40 30.80 0.32 -7.28 16 29 H 0.28 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.14 2.76 8.06 -52.49 -0.42 2.33 16 31 H 0.40 4.78 8.83 -40.82 -0.36 4.42 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 35 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 36 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.10 0.38 8.13 -51.93 -0.42 -0.05 16 38 H 0.21 1.14 8.06 -52.48 -0.42 0.72 16 39 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 41 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 42 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.18 4.56 5.92 -52.48 -0.31 4.25 16 LS Contribution 373.65 15.07 5.63 5.63 Total: -1.00 -37.42 373.65 -9.69 -47.11 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -5.29 Total: 9.48 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -5.50 Total: -11.12 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.42 Total: -53.99 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.07 Total: -10.89 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.02 Total: 13.79 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.42 -9.69 -47.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747430389.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.044 kcal (2) G-P(sol) polarization free energy of solvation -37.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds