Wall clock time and date at job start Sat Apr 11 2020 05:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31299 * 1 3 3 Si 1.86798 * 119.99619 * 2 1 4 4 H 1.48497 * 109.46956 * 239.99513 * 3 2 1 5 5 H 1.48495 * 109.47539 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47178 * 119.99977 * 3 2 1 7 7 C 1.38982 * 120.00133 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99952 * 180.02562 * 7 2 1 9 9 N 1.37326 * 120.00317 * 359.97438 * 7 2 1 10 10 C 1.36486 * 126.07264 * 180.02562 * 9 7 2 11 11 C 1.35681 * 107.50928 * 180.02562 * 10 9 7 12 12 N 1.40592 * 126.08240 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00151 * 179.97438 * 12 11 10 14 14 O 1.21303 * 119.99996 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00369 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47466 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.47060 * 180.02562 * 16 15 13 18 18 N 1.46499 * 109.46840 * 180.02562 * 17 16 15 19 19 C 1.36037 * 126.34815 * 264.68633 * 18 17 16 20 20 N 1.30107 * 110.10182 * 179.87780 * 19 18 17 21 21 C 1.35783 * 109.64164 * 0.39107 * 20 19 18 22 22 C 1.39747 * 133.60288 * 179.76274 * 21 20 19 23 23 C 1.36600 * 119.88568 * 180.02562 * 22 21 20 24 24 C 1.38771 * 120.67065 * 359.97394 * 23 22 21 25 25 C 1.37856 * 120.45260 * 0.04742 * 24 23 22 26 26 C 1.38055 * 126.35328 * 84.99901 * 18 17 16 27 27 C 1.40646 * 107.83260 * 0.26343 * 11 10 9 28 28 N 1.30908 * 108.38960 * 359.55373 * 27 11 10 29 29 H 0.97000 * 119.99962 * 359.97438 * 1 2 3 30 30 H 1.07998 * 126.24677 * 0.04439 * 10 9 7 31 31 H 0.97003 * 120.00209 * 0.02562 * 12 11 10 32 32 H 1.09002 * 109.47120 * 59.99760 * 15 13 12 33 33 H 1.08998 * 109.46862 * 300.00562 * 15 13 12 34 34 H 1.09002 * 109.47153 * 59.99773 * 16 15 13 35 35 H 1.09001 * 109.46832 * 299.99964 * 16 15 13 36 36 H 1.09001 * 109.47194 * 299.99650 * 17 16 15 37 37 H 1.08992 * 109.47399 * 59.99823 * 17 16 15 38 38 H 1.08003 * 124.94734 * 0.02562 * 19 18 17 39 39 H 1.08001 * 120.05734 * 359.97438 * 22 21 20 40 40 H 1.08001 * 119.66102 * 179.97438 * 23 22 21 41 41 H 1.08004 * 119.77568 * 180.02562 * 24 23 22 42 42 H 1.07994 * 120.15578 * 180.02562 * 25 24 23 43 43 H 1.08004 * 125.80129 * 179.70436 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.1007 1.6964 -1.2124 5 1 1.2819 2.7465 -0.0006 6 1 3.1006 1.6965 1.2125 7 6 2.0079 -1.2036 0.0005 8 1 3.0880 -1.2036 0.0010 9 7 1.3214 -2.3929 0.0016 10 6 1.8750 -3.6404 0.0027 11 6 0.8579 -4.5385 0.0029 12 7 0.9892 -5.9382 0.0035 13 6 -0.1099 -6.7182 0.0042 14 8 -1.2125 -6.2125 0.0039 15 6 0.0308 -8.2186 0.0053 16 6 -1.3578 -8.8611 0.0053 17 6 -1.2148 -10.3844 0.0071 18 7 -2.5444 -10.9996 0.0065 19 6 -3.2346 -11.4290 1.0972 20 7 -4.3832 -11.9210 0.7344 21 6 -4.5046 -11.8486 -0.6160 22 6 -5.5053 -12.2265 -1.5153 23 6 -5.3311 -12.0187 -2.8541 24 6 -4.1678 -11.4340 -3.3343 25 6 -3.1671 -11.0536 -2.4658 26 6 -3.3267 -11.2565 -1.1017 27 6 -0.3511 -3.8199 -0.0042 28 7 -0.0714 -2.5410 0.0011 29 1 -0.4850 0.8400 0.0004 30 1 2.9302 -3.8708 0.0036 31 1 1.8709 -6.3427 0.0041 32 1 0.5764 -8.5317 0.8955 33 1 0.5763 -8.5330 -0.8844 34 1 -1.9030 -8.5480 -0.8851 35 1 -1.9036 -8.5467 0.8949 36 1 -0.6688 -10.6992 -0.8822 37 1 -0.6698 -10.6971 0.8977 38 1 -2.8817 -11.3681 2.1162 39 1 -6.4145 -12.6828 -1.1525 40 1 -6.1066 -12.3126 -3.5459 41 1 -4.0454 -11.2761 -4.3957 42 1 -2.2639 -10.5985 -2.8446 43 1 -1.3417 -4.2501 -0.0104 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747430389.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:37 Heat of formation + Delta-G solvation = 94.791802 kcal Electronic energy + Delta-G solvation = -26992.021438 eV Core-core repulsion = 23038.823804 eV Total energy + Delta-G solvation = -3953.197634 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -43.04814 -41.68981 -40.25906 -38.28135 -36.45706 -35.85215 -34.94262 -33.53585 -32.23402 -31.22038 -30.23368 -29.79789 -27.96305 -26.59315 -24.17692 -23.92145 -22.96107 -22.77174 -21.55042 -21.35889 -21.12985 -19.32663 -18.31553 -18.14858 -17.52192 -17.29572 -16.92304 -16.82106 -16.64978 -16.28450 -15.75749 -15.56100 -15.14985 -15.02415 -14.83467 -14.66025 -14.63040 -14.43081 -13.68688 -13.44682 -13.29571 -13.11648 -12.90569 -12.87413 -12.83244 -12.74170 -12.51532 -12.29494 -12.14881 -11.81951 -11.80039 -11.31135 -10.99082 -10.91070 -10.83113 -10.62740 -10.10593 -9.30363 -9.05240 -8.50850 -8.47205 -6.24651 0.04264 0.58638 1.24590 1.39049 1.55649 1.57242 1.68969 1.88862 1.89191 2.08507 2.38686 2.54685 2.93480 2.94756 3.08865 3.39327 3.67798 3.76080 3.78694 3.96316 4.14924 4.22296 4.27967 4.36653 4.43876 4.51029 4.53886 4.55958 4.62796 4.69574 4.73092 4.86395 5.00012 5.01520 5.11043 5.25710 5.27938 5.30439 5.48932 5.53081 5.60148 5.61226 5.96092 5.98543 6.26413 6.33010 6.74406 6.83187 6.92034 7.44829 7.51452 7.69804 8.52053 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024935 B = 0.001748 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.668098 B =16015.865896 C =16413.051476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C -0.009 4.009 3 Si 1.020 2.980 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.252 1.252 7 C -0.355 4.355 8 H 0.142 0.858 9 N -0.170 5.170 10 C -0.081 4.081 11 C -0.044 4.044 12 N -0.618 5.618 13 C 0.489 3.511 14 O -0.589 6.589 15 C -0.113 4.113 16 C -0.115 4.115 17 C 0.115 3.885 18 N -0.489 5.489 19 C 0.264 3.736 20 N -0.544 5.544 21 C 0.007 3.993 22 C -0.090 4.090 23 C -0.127 4.127 24 C -0.108 4.108 25 C -0.118 4.118 26 C 0.029 3.971 27 C -0.064 4.064 28 N -0.313 5.313 29 H 0.276 0.724 30 H 0.190 0.810 31 H 0.422 0.578 32 H 0.137 0.863 33 H 0.131 0.869 34 H 0.045 0.955 35 H 0.055 0.945 36 H 0.111 0.889 37 H 0.137 0.863 38 H 0.250 0.750 39 H 0.130 0.870 40 H 0.154 0.846 41 H 0.155 0.845 42 H 0.138 0.862 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.608 -24.509 -2.788 24.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.176 1.176 5 H -0.205 1.205 6 H -0.176 1.176 7 C -0.486 4.486 8 H 0.159 0.841 9 N 0.061 4.939 10 C -0.231 4.231 11 C -0.150 4.150 12 N -0.263 5.263 13 C 0.278 3.722 14 O -0.469 6.469 15 C -0.153 4.153 16 C -0.154 4.154 17 C -0.006 4.006 18 N -0.178 5.178 19 C -0.022 4.022 20 N -0.264 5.264 21 C -0.111 4.111 22 C -0.109 4.109 23 C -0.147 4.147 24 C -0.127 4.127 25 C -0.139 4.139 26 C -0.080 4.080 27 C -0.239 4.239 28 N -0.146 5.146 29 H 0.085 0.915 30 H 0.207 0.793 31 H 0.260 0.740 32 H 0.155 0.845 33 H 0.149 0.851 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.129 0.871 37 H 0.155 0.845 38 H 0.266 0.734 39 H 0.148 0.852 40 H 0.171 0.829 41 H 0.173 0.827 42 H 0.156 0.844 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.688 -23.145 -2.252 23.316 hybrid contribution 0.923 0.428 -0.304 1.062 sum 2.611 -22.717 -2.555 23.009 Atomic orbital electron populations 1.70405 1.08480 1.29102 1.37532 1.26908 0.96469 1.04454 0.94183 0.84647 0.77520 0.73677 0.80329 1.17641 1.20478 1.17624 1.20584 0.92972 0.80912 1.54089 0.84057 1.44844 1.03564 1.04925 1.40577 1.22045 0.98905 0.84146 1.18027 1.17379 0.92443 0.84422 1.20772 1.42548 1.10227 1.01981 1.71558 1.21670 0.83245 0.91355 0.75934 1.90620 1.28110 1.76662 1.51552 1.21516 0.98895 0.86791 1.08136 1.21589 0.96922 0.94296 1.02561 1.22111 0.79777 0.91057 1.07651 1.45662 1.17398 1.49624 1.05165 1.26123 0.87364 0.93703 0.94974 1.70401 1.19487 1.25009 1.11480 1.19535 0.96122 1.04545 0.90864 1.20283 0.97614 1.00526 0.92526 1.20988 0.98937 1.00245 0.94567 1.21305 0.92842 0.97929 1.00666 1.20318 1.01595 1.03257 0.88698 1.19210 0.93725 1.04308 0.90734 1.24137 0.99089 0.91038 1.09684 1.78148 0.92184 1.16721 1.27513 0.91482 0.79319 0.73994 0.84537 0.85133 0.93586 0.92575 0.87117 0.84517 0.73408 0.85231 0.82882 0.82690 0.84392 0.82015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.27 11.81 21.66 0.26 -48.01 16 2 C -0.01 -0.46 5.50 84.95 0.47 0.01 16 3 Si 1.02 38.50 29.55 68.60 2.03 40.53 16 4 H -0.25 -8.86 7.11 99.48 0.71 -8.15 16 5 H -0.28 -10.55 7.11 99.48 0.71 -9.84 16 6 H -0.25 -8.85 7.11 99.48 0.71 -8.14 16 7 C -0.35 -18.70 10.25 84.01 0.86 -17.84 16 8 H 0.14 6.38 7.83 -2.91 -0.02 6.35 16 9 N -0.17 -9.40 3.74 -190.02 -0.71 -10.11 16 10 C -0.08 -3.65 11.49 83.38 0.96 -2.69 16 11 C -0.04 -1.95 6.90 37.73 0.26 -1.69 16 12 N -0.62 -18.80 5.47 -303.93 -1.66 -20.47 16 13 C 0.49 14.46 7.80 87.66 0.68 15.14 16 14 O -0.59 -24.63 13.13 -3.10 -0.04 -24.67 16 15 C -0.11 -1.53 5.70 29.85 0.17 -1.36 16 16 C -0.11 -1.92 4.83 30.59 0.15 -1.77 16 17 C 0.11 1.08 6.16 86.38 0.53 1.61 16 18 N -0.49 -8.59 2.81 -520.28 -1.46 -10.05 16 19 C 0.26 4.86 12.49 180.06 2.25 7.11 16 20 N -0.54 -14.27 11.27 -192.03 -2.16 -16.43 16 21 C 0.01 0.18 7.23 39.45 0.29 0.47 16 22 C -0.09 -2.00 10.05 22.25 0.22 -1.78 16 23 C -0.13 -2.19 9.96 22.01 0.22 -1.98 16 24 C -0.11 -1.78 10.03 22.31 0.22 -1.55 16 25 C -0.12 -2.23 10.05 22.32 0.22 -2.00 16 26 C 0.03 0.66 6.87 38.86 0.27 0.93 16 27 C -0.06 -3.52 10.85 85.42 0.93 -2.60 16 28 N -0.31 -19.08 10.40 -56.47 -0.59 -19.67 16 29 H 0.28 14.84 8.31 -92.71 -0.77 14.07 16 30 H 0.19 6.52 8.06 -2.91 -0.02 6.50 16 31 H 0.42 8.33 8.83 -92.71 -0.82 7.51 16 32 H 0.14 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 35 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 36 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.14 0.29 8.13 -2.39 -0.02 0.27 16 38 H 0.25 2.12 8.06 -2.91 -0.02 2.10 16 39 H 0.13 2.58 8.06 -2.91 -0.02 2.55 16 40 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 41 H 0.16 1.63 8.06 -2.91 -0.02 1.60 16 42 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 43 H 0.16 9.08 5.92 -2.91 -0.02 9.07 16 Total: -1.00 -91.33 373.65 4.59 -86.74 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: 0.24 Total: 32.14 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: 8.70 Total: -9.99 kcal Atomic # 7 Polarization: -118.41 SS G_CDS: -6.33 Total: -124.74 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.04 Total: -24.67 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.03 Total: 40.53 kcal Total: -91.33 4.59 -86.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747430389.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.527 kcal (2) G-P(sol) polarization free energy of solvation -91.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds