Wall clock time and date at job start Sat Apr 11 2020 05:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 O 1.42100 * 110.54391 * 2 1 4 4 O 1.42104 * 110.54686 * 223.25035 * 2 1 3 5 5 N 1.65597 * 104.45101 * 111.62378 * 2 1 3 6 6 C 1.40004 * 120.00273 * 299.03142 * 5 2 1 7 7 C 1.38855 * 119.99793 * 313.50751 * 6 5 2 8 8 C 1.38091 * 120.00117 * 179.81014 * 7 6 5 9 9 C 1.38861 * 119.99930 * 0.41401 * 8 7 6 10 10 N 1.39995 * 120.00226 * 179.81207 * 9 8 7 11 11 C 1.46954 * 111.00306 * 123.82497 * 10 9 8 12 12 C 1.53051 * 109.36681 * 176.81187 * 11 10 9 13 13 N 1.46959 * 109.36291 * 58.40348 * 12 11 10 14 14 C 1.46898 * 110.99882 * 176.81335 * 13 12 11 15 15 C 1.50708 * 109.46982 * 293.79355 * 14 13 12 16 16 H 1.07996 * 119.99753 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99977 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99902 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99789 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47331 * 60.00232 * 19 17 15 21 21 H 1.48498 * 109.47084 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47144 * 300.00117 * 19 17 15 23 23 C 1.46953 * 110.87855 * 300.67579 * 13 12 11 24 24 C 1.46964 * 111.00004 * 0.02562 * 10 9 8 25 25 C 1.38863 * 119.99676 * 359.83943 * 9 8 7 26 26 C 1.38090 * 119.99844 * 359.95068 * 25 9 8 27 27 H 1.08992 * 109.47689 * 313.84345 * 1 2 3 28 28 H 1.09002 * 109.47294 * 73.85171 * 1 2 3 29 29 H 1.09005 * 109.47103 * 193.84727 * 1 2 3 30 30 H 0.97002 * 120.00083 * 118.75260 * 5 2 1 31 31 H 1.08003 * 120.00020 * 359.97438 * 7 6 5 32 32 H 1.08005 * 120.00410 * 180.23286 * 8 7 6 33 33 H 1.09002 * 109.48724 * 296.77805 * 11 10 9 34 34 H 1.09000 * 109.48625 * 56.84221 * 11 10 9 35 35 H 1.08992 * 109.49362 * 298.43350 * 12 11 10 36 36 H 1.08998 * 109.50448 * 178.37546 * 12 11 10 37 37 H 1.09000 * 109.47450 * 53.79553 * 14 13 12 38 38 H 1.08997 * 109.47366 * 173.80083 * 14 13 12 39 39 H 0.97005 * 119.99822 * 180.02562 * 18 17 15 40 40 H 1.08996 * 109.49079 * 299.35400 * 23 13 12 41 41 H 1.09004 * 109.49207 * 179.28744 * 23 13 12 42 42 H 1.08994 * 109.48999 * 303.15899 * 24 10 9 43 43 H 1.09001 * 109.48493 * 63.22402 * 24 10 9 44 44 H 1.08000 * 119.99355 * 179.97438 * 25 9 8 45 45 H 1.08008 * 119.99177 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2272 -0.5909 1.4907 6 6 1.8321 0.0906 2.6481 7 6 2.0012 1.4661 2.7356 8 6 1.6080 2.1389 3.8756 9 6 1.0513 1.4389 4.9378 10 7 0.6563 2.1204 6.0951 11 6 -0.7600 1.8696 6.3965 12 6 -1.1308 2.5657 7.7081 13 7 -0.8684 4.0065 7.5862 14 6 -1.2829 4.7217 8.8005 15 6 -2.7813 4.6443 8.9423 16 1 -3.3669 4.1162 8.2044 17 6 -3.4043 5.2467 10.0147 18 7 -2.6911 5.8893 10.9136 19 14 -5.2615 5.1500 10.1908 20 1 -5.6762 3.7274 10.2878 21 1 -5.6805 5.8731 11.4183 22 1 -5.9041 5.7733 9.0060 23 6 0.5478 4.2573 7.2849 24 6 0.9186 3.5613 5.9732 25 6 0.8871 0.0626 4.8523 26 6 1.2764 -0.6095 3.7106 27 1 -0.3634 0.7118 0.7411 28 1 -0.3634 0.2858 -0.9871 29 1 -0.3633 -0.9978 0.2460 30 1 2.7395 -1.4115 1.5622 31 1 2.4379 2.0100 1.9111 32 1 1.7361 3.2093 3.9423 33 1 -1.3785 2.2618 5.5892 34 1 -0.9265 0.7969 6.4944 35 1 -0.5314 2.1544 8.5202 36 1 -2.1880 2.4052 7.9191 37 1 -0.8115 4.2643 9.6704 38 1 -0.9783 5.7658 8.7291 39 1 -3.1294 6.3128 11.6682 40 1 1.1664 3.8653 8.0922 41 1 0.7144 5.3301 7.1869 42 1 1.9759 3.7219 5.7625 43 1 0.3191 3.9726 5.1611 44 1 0.4545 -0.4818 5.6786 45 1 1.1482 -1.6799 3.6440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767743562.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:44 Heat of formation + Delta-G solvation = -17.425166 kcal Electronic energy + Delta-G solvation = -27057.557106 eV Core-core repulsion = 23202.644580 eV Total energy + Delta-G solvation = -3854.912527 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.42026 -38.51682 -37.49219 -36.41426 -35.95447 -33.92860 -32.43428 -31.60784 -30.31041 -29.90863 -29.11801 -26.98759 -25.00965 -24.04182 -22.27422 -21.99408 -21.24304 -19.87367 -19.38356 -18.23833 -17.98778 -17.09328 -16.67598 -16.36594 -15.77334 -15.53787 -15.07071 -14.57083 -14.49817 -14.24841 -13.99615 -13.90857 -13.77408 -13.66994 -13.59583 -13.46825 -13.15288 -12.78643 -12.54586 -12.35877 -12.24628 -11.95891 -11.75365 -11.64560 -11.37065 -11.27405 -10.98187 -10.86551 -10.81173 -10.72876 -10.46651 -10.40196 -9.82993 -9.41893 -9.20295 -9.14999 -8.47947 -7.70479 -7.33776 -6.07191 -4.09190 -0.23549 1.14862 1.20757 2.18935 3.29676 3.30949 3.34395 3.36593 3.44697 3.77408 3.86930 4.30994 4.37550 4.53565 4.67842 4.79448 4.83068 4.87720 5.09525 5.20500 5.25471 5.27759 5.28122 5.37311 5.54640 5.59638 5.66737 5.72380 5.88047 5.90911 5.94381 6.02653 6.23591 6.25685 6.33199 6.44353 6.50991 6.56236 6.74705 7.01871 7.24289 7.26786 7.30632 7.73079 8.01182 8.11909 8.47166 8.97643 9.55195 11.03563 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025008 B = 0.002110 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.376185 B =13268.856799 C =13567.680105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.668 4.668 2 S 2.610 3.390 3 O -0.950 6.950 4 O -0.959 6.959 5 N -1.055 6.055 6 C 0.095 3.905 7 C -0.121 4.121 8 C -0.153 4.153 9 C 0.121 3.879 10 N -0.490 5.490 11 C 0.062 3.938 12 C 0.064 3.936 13 N -0.538 5.538 14 C 0.194 3.806 15 C -0.510 4.510 16 H 0.062 0.938 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.899 3.101 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.276 1.276 23 C 0.054 3.946 24 C 0.055 3.945 25 C -0.129 4.129 26 C -0.102 4.102 27 H 0.132 0.868 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.423 0.577 31 H 0.155 0.845 32 H 0.135 0.865 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.031 0.969 36 H 0.092 0.908 37 H -0.008 1.008 38 H 0.031 0.969 39 H 0.262 0.738 40 H 0.033 0.967 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.054 0.946 44 H 0.131 0.869 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.328 -14.188 -18.988 25.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.818 4.818 2 S 2.703 3.297 3 O -0.940 6.940 4 O -0.949 6.949 5 N -0.806 5.806 6 C -0.001 4.001 7 C -0.142 4.142 8 C -0.175 4.175 9 C 0.021 3.979 10 N -0.205 5.205 11 C -0.063 4.063 12 C -0.065 4.065 13 N -0.264 5.264 14 C 0.069 3.931 15 C -0.548 4.548 16 H 0.080 0.920 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.727 3.273 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.075 4.075 24 C -0.072 4.072 25 C -0.150 4.150 26 C -0.124 4.124 27 H 0.151 0.849 28 H 0.149 0.851 29 H 0.149 0.851 30 H 0.260 0.740 31 H 0.172 0.828 32 H 0.153 0.847 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.049 0.951 36 H 0.110 0.890 37 H 0.010 0.990 38 H 0.049 0.951 39 H 0.072 0.928 40 H 0.051 0.949 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.073 0.927 44 H 0.148 0.852 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.773 -13.615 -19.481 25.335 hybrid contribution -1.266 -0.551 0.790 1.591 sum 7.508 -14.165 -18.691 24.625 Atomic orbital electron populations 1.30451 1.27480 1.12086 1.11820 1.05036 0.77853 0.74436 0.72328 1.93588 1.77119 1.38073 1.85178 1.93624 1.78311 1.61674 1.61339 1.53232 1.67689 1.38883 1.20844 1.17275 1.02976 0.91354 0.88513 1.21718 0.99633 0.93182 0.99697 1.21297 1.03501 1.00540 0.92147 1.19245 0.96958 0.93295 0.88387 1.59317 1.20262 1.10466 1.30425 1.22427 0.84484 1.00373 0.99048 1.22046 1.02033 0.88683 0.93689 1.62316 1.15335 1.07971 1.40765 1.19706 0.96069 0.93396 0.83913 1.21094 0.91594 1.34112 1.08046 0.91970 1.24993 0.98510 0.95342 0.95742 1.69947 1.35607 1.35374 1.12754 0.86554 0.85264 0.78139 0.77392 1.20276 1.21348 1.20179 1.22110 0.90884 0.99617 0.94905 1.22412 1.00702 0.85200 0.98927 1.20698 1.03371 0.92593 0.98322 1.20956 0.98414 0.99884 0.93190 0.84916 0.85113 0.85112 0.74036 0.82798 0.84679 0.93098 0.90399 0.95051 0.89015 0.98973 0.95103 0.92811 0.94918 0.90449 0.90262 0.92734 0.85158 0.85467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -3.13 10.74 101.05 1.09 -2.04 16 2 S 2.61 19.24 6.00 -107.50 -0.64 18.59 16 3 O -0.95 -10.16 15.20 -57.54 -0.87 -11.03 16 4 O -0.96 -9.81 18.08 -57.54 -1.04 -10.85 16 5 N -1.05 -7.19 5.68 32.45 0.18 -7.01 16 6 C 0.09 0.84 6.02 -83.67 -0.50 0.33 16 7 C -0.12 -1.26 9.23 -39.41 -0.36 -1.63 16 8 C -0.15 -1.73 8.82 -39.40 -0.35 -2.08 16 9 C 0.12 1.46 5.65 -83.67 -0.47 0.99 16 10 N -0.49 -6.83 4.76 -170.88 -0.81 -7.64 16 11 C 0.06 0.89 5.38 -3.77 -0.02 0.87 16 12 C 0.06 1.18 5.43 -3.77 -0.02 1.16 16 13 N -0.54 -11.10 4.70 -235.91 -1.11 -12.21 16 14 C 0.19 4.91 4.72 -4.97 -0.02 4.88 16 15 C -0.51 -13.87 8.47 -34.44 -0.29 -14.16 16 16 H 0.06 1.66 7.13 -52.49 -0.37 1.29 16 17 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 18 N -0.90 -26.19 13.29 55.43 0.74 -25.46 16 19 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 C 0.05 0.93 5.61 -3.77 -0.02 0.91 16 24 C 0.05 0.77 4.30 -3.76 -0.02 0.75 16 25 C -0.13 -1.32 9.19 -39.40 -0.36 -1.68 16 26 C -0.10 -0.86 9.96 -39.41 -0.39 -1.26 16 27 H 0.13 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.13 0.43 8.14 -51.92 -0.42 0.01 16 29 H 0.13 0.42 8.14 -51.92 -0.42 -0.01 16 30 H 0.42 2.07 8.92 -34.47 -0.31 1.77 16 31 H 0.15 1.65 5.66 -52.48 -0.30 1.35 16 32 H 0.14 1.44 5.81 -52.48 -0.30 1.13 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.96 6.82 -51.93 -0.35 0.60 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 1.79 6.79 -51.93 -0.35 1.44 16 37 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 38 H 0.03 0.83 8.03 -51.93 -0.42 0.42 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 42 H 0.08 0.97 7.17 -51.93 -0.37 0.59 16 43 H 0.05 0.77 7.58 -51.93 -0.39 0.37 16 44 H 0.13 1.23 7.18 -52.49 -0.38 0.85 16 45 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 LS Contribution 370.02 15.07 5.58 5.58 Total: -1.00 -34.21 370.02 -11.34 -45.55 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -6.48 Total: -0.12 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -1.85 Total: -11.51 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: -1.00 Total: -52.32 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -1.91 Total: -21.88 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 19.24 SS G_CDS: -0.64 Total: 18.59 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.21 -11.34 -45.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767743562.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.124 kcal (2) G-P(sol) polarization free energy of solvation -34.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds