Wall clock time and date at job start Sat Apr 11 2020 05:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 O 1.42100 * 110.54391 * 2 1 4 4 O 1.42104 * 110.54686 * 223.25035 * 2 1 3 5 5 N 1.65597 * 104.45101 * 111.62378 * 2 1 3 6 6 C 1.40004 * 120.00273 * 299.03142 * 5 2 1 7 7 C 1.38855 * 119.99793 * 313.50751 * 6 5 2 8 8 C 1.38091 * 120.00117 * 179.81014 * 7 6 5 9 9 C 1.38861 * 119.99930 * 0.41401 * 8 7 6 10 10 N 1.39995 * 120.00226 * 179.81207 * 9 8 7 11 11 C 1.46954 * 111.00306 * 123.82497 * 10 9 8 12 12 C 1.53051 * 109.36681 * 176.81187 * 11 10 9 13 13 N 1.46959 * 109.36291 * 58.40348 * 12 11 10 14 14 C 1.46898 * 110.99882 * 176.81335 * 13 12 11 15 15 C 1.50708 * 109.46982 * 293.79355 * 14 13 12 16 16 H 1.07996 * 119.99753 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99977 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99902 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99789 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47331 * 60.00232 * 19 17 15 21 21 H 1.48498 * 109.47084 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47144 * 300.00117 * 19 17 15 23 23 C 1.46953 * 110.87855 * 300.67579 * 13 12 11 24 24 C 1.46964 * 111.00004 * 0.02562 * 10 9 8 25 25 C 1.38863 * 119.99676 * 359.83943 * 9 8 7 26 26 C 1.38090 * 119.99844 * 359.95068 * 25 9 8 27 27 H 1.08992 * 109.47689 * 313.84345 * 1 2 3 28 28 H 1.09002 * 109.47294 * 73.85171 * 1 2 3 29 29 H 1.09005 * 109.47103 * 193.84727 * 1 2 3 30 30 H 0.97002 * 120.00083 * 118.75260 * 5 2 1 31 31 H 1.08003 * 120.00020 * 359.97438 * 7 6 5 32 32 H 1.08005 * 120.00410 * 180.23286 * 8 7 6 33 33 H 1.09002 * 109.48724 * 296.77805 * 11 10 9 34 34 H 1.09000 * 109.48625 * 56.84221 * 11 10 9 35 35 H 1.08992 * 109.49362 * 298.43350 * 12 11 10 36 36 H 1.08998 * 109.50448 * 178.37546 * 12 11 10 37 37 H 1.09000 * 109.47450 * 53.79553 * 14 13 12 38 38 H 1.08997 * 109.47366 * 173.80083 * 14 13 12 39 39 H 0.97005 * 119.99822 * 180.02562 * 18 17 15 40 40 H 1.08996 * 109.49079 * 299.35400 * 23 13 12 41 41 H 1.09004 * 109.49207 * 179.28744 * 23 13 12 42 42 H 1.08994 * 109.48999 * 303.15899 * 24 10 9 43 43 H 1.09001 * 109.48493 * 63.22402 * 24 10 9 44 44 H 1.08000 * 119.99355 * 179.97438 * 25 9 8 45 45 H 1.08008 * 119.99177 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2272 -0.5909 1.4907 6 6 1.8321 0.0906 2.6481 7 6 2.0012 1.4661 2.7356 8 6 1.6080 2.1389 3.8756 9 6 1.0513 1.4389 4.9378 10 7 0.6563 2.1204 6.0951 11 6 -0.7600 1.8696 6.3965 12 6 -1.1308 2.5657 7.7081 13 7 -0.8684 4.0065 7.5862 14 6 -1.2829 4.7217 8.8005 15 6 -2.7813 4.6443 8.9423 16 1 -3.3669 4.1162 8.2044 17 6 -3.4043 5.2467 10.0147 18 7 -2.6911 5.8893 10.9136 19 14 -5.2615 5.1500 10.1908 20 1 -5.6762 3.7274 10.2878 21 1 -5.6805 5.8731 11.4183 22 1 -5.9041 5.7733 9.0060 23 6 0.5478 4.2573 7.2849 24 6 0.9186 3.5613 5.9732 25 6 0.8871 0.0626 4.8523 26 6 1.2764 -0.6095 3.7106 27 1 -0.3634 0.7118 0.7411 28 1 -0.3634 0.2858 -0.9871 29 1 -0.3633 -0.9978 0.2460 30 1 2.7395 -1.4115 1.5622 31 1 2.4379 2.0100 1.9111 32 1 1.7361 3.2093 3.9423 33 1 -1.3785 2.2618 5.5892 34 1 -0.9265 0.7969 6.4944 35 1 -0.5314 2.1544 8.5202 36 1 -2.1880 2.4052 7.9191 37 1 -0.8115 4.2643 9.6704 38 1 -0.9783 5.7658 8.7291 39 1 -3.1294 6.3128 11.6682 40 1 1.1664 3.8653 8.0922 41 1 0.7144 5.3301 7.1869 42 1 1.9759 3.7219 5.7625 43 1 0.3191 3.9726 5.1611 44 1 0.4545 -0.4818 5.6786 45 1 1.1482 -1.6799 3.6440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767743562.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:43 Heat of formation + Delta-G solvation = -44.265804 kcal Electronic energy + Delta-G solvation = -27058.721003 eV Core-core repulsion = 23202.644580 eV Total energy + Delta-G solvation = -3856.076424 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -41.37099 -39.58761 -38.21934 -37.22459 -37.04426 -35.15241 -34.20265 -32.59138 -31.39854 -30.47051 -30.31016 -28.41893 -26.46819 -25.18187 -23.77687 -22.97932 -22.46681 -20.71827 -20.48384 -18.95159 -18.64302 -18.48012 -18.04900 -17.27830 -16.72670 -16.50282 -16.39655 -15.92499 -15.83828 -15.45714 -15.41447 -14.95313 -14.78535 -14.50957 -14.15445 -14.10111 -13.99687 -13.97903 -13.70703 -13.34638 -13.26154 -13.05763 -13.01428 -12.90010 -12.65098 -12.57584 -12.35082 -12.23954 -12.16044 -12.08609 -11.75990 -11.60233 -11.45398 -11.21713 -10.60779 -10.25594 -9.90460 -9.07251 -8.59323 -8.20036 -6.30582 -0.79978 0.36063 0.44585 1.42400 1.45539 1.53376 1.61638 2.40769 2.59376 2.76630 2.91059 3.12239 3.22318 3.26618 3.84444 3.91606 3.98575 4.06228 4.11639 4.13756 4.24931 4.31507 4.33140 4.41732 4.46705 4.59860 4.62589 4.78185 4.79249 4.93051 4.93597 4.99085 5.03386 5.16375 5.20567 5.24802 5.25443 5.39222 5.52107 5.63712 5.78100 6.00110 6.05611 6.08789 6.27838 6.40064 6.59255 6.84943 7.39247 8.90965 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025008 B = 0.002110 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.376185 B =13268.856799 C =13567.680105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.653 4.653 2 S 2.618 3.382 3 O -0.989 6.989 4 O -0.990 6.990 5 N -1.049 6.049 6 C 0.107 3.893 7 C -0.133 4.133 8 C -0.158 4.158 9 C 0.098 3.902 10 N -0.498 5.498 11 C 0.075 3.925 12 C 0.066 3.934 13 N -0.544 5.544 14 C 0.209 3.791 15 C -0.523 4.523 16 H 0.065 0.935 17 C 0.000 4.000 18 N -0.935 5.935 19 Si 0.971 3.029 20 H -0.265 1.265 21 H -0.285 1.285 22 H -0.268 1.268 23 C 0.053 3.947 24 C 0.065 3.935 25 C -0.128 4.128 26 C -0.093 4.093 27 H 0.137 0.863 28 H 0.149 0.851 29 H 0.154 0.846 30 H 0.433 0.567 31 H 0.148 0.852 32 H 0.135 0.865 33 H 0.048 0.952 34 H 0.105 0.895 35 H 0.019 0.981 36 H 0.076 0.924 37 H -0.040 1.040 38 H 0.004 0.996 39 H 0.264 0.736 40 H 0.022 0.978 41 H 0.076 0.924 42 H 0.100 0.900 43 H 0.056 0.944 44 H 0.141 0.859 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.177 -16.500 -20.708 27.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.715 3.285 3 O -0.979 6.979 4 O -0.980 6.980 5 N -0.801 5.801 6 C 0.011 3.989 7 C -0.155 4.155 8 C -0.180 4.180 9 C 0.000 4.000 10 N -0.214 5.214 11 C -0.051 4.051 12 C -0.063 4.063 13 N -0.269 5.269 14 C 0.083 3.917 15 C -0.561 4.561 16 H 0.084 0.916 17 C -0.198 4.198 18 N -0.576 5.576 19 Si 0.795 3.205 20 H -0.190 1.190 21 H -0.211 1.211 22 H -0.193 1.193 23 C -0.076 4.076 24 C -0.062 4.062 25 C -0.149 4.149 26 C -0.115 4.115 27 H 0.155 0.845 28 H 0.167 0.833 29 H 0.172 0.828 30 H 0.272 0.728 31 H 0.166 0.834 32 H 0.153 0.847 33 H 0.067 0.933 34 H 0.124 0.876 35 H 0.037 0.963 36 H 0.094 0.906 37 H -0.022 1.022 38 H 0.022 0.978 39 H 0.073 0.927 40 H 0.040 0.960 41 H 0.094 0.906 42 H 0.118 0.882 43 H 0.074 0.926 44 H 0.159 0.841 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 7.684 -15.961 -21.238 27.656 hybrid contribution -0.856 0.115 1.237 1.509 sum 6.828 -15.846 -20.001 26.415 Atomic orbital electron populations 1.30321 1.23257 1.13815 1.13277 1.04585 0.79126 0.73001 0.71771 1.93543 1.78990 1.39781 1.85570 1.93585 1.79917 1.62248 1.62275 1.53063 1.68072 1.39027 1.19974 1.17318 1.01769 0.90861 0.88989 1.21735 1.00300 0.94136 0.99328 1.21324 1.03568 1.00724 0.92339 1.19281 0.98635 0.94058 0.88070 1.59333 1.19730 1.10127 1.32172 1.22275 0.85228 1.01300 0.96281 1.22034 1.00920 0.87433 0.95910 1.62240 1.17608 1.09237 1.37838 1.19347 0.95388 0.92185 0.84812 1.21414 0.92515 1.33983 1.08218 0.91637 1.25943 1.03750 0.94789 0.95295 1.70087 1.37767 1.36303 1.13397 0.85417 0.78913 0.78692 0.77479 1.18986 1.21077 1.19321 1.22185 0.88704 1.00184 0.96524 1.22290 1.01898 0.85518 0.96460 1.20900 1.02943 0.91847 0.99176 1.21226 0.97001 1.01354 0.91956 0.84472 0.83312 0.82797 0.72808 0.83437 0.84724 0.93321 0.87649 0.96321 0.90570 1.02202 0.97806 0.92703 0.95968 0.90558 0.88182 0.92614 0.84124 0.82251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.89 10.74 113.37 1.22 -2.68 16 2 S 2.62 34.12 6.00 -56.49 -0.34 33.78 16 3 O -0.99 -20.53 15.20 -127.65 -1.94 -22.47 16 4 O -0.99 -18.94 18.08 -127.65 -2.31 -21.25 16 5 N -1.05 -11.69 5.68 -51.23 -0.29 -11.98 16 6 C 0.11 1.60 6.02 38.13 0.23 1.83 16 7 C -0.13 -2.57 9.23 22.38 0.21 -2.37 16 8 C -0.16 -3.34 8.82 22.38 0.20 -3.14 16 9 C 0.10 2.17 5.65 38.14 0.22 2.39 16 10 N -0.50 -13.25 4.76 -694.54 -3.31 -16.56 16 11 C 0.07 2.06 5.38 86.31 0.46 2.53 16 12 C 0.07 2.44 5.43 86.31 0.47 2.90 16 13 N -0.54 -23.13 4.70 -900.29 -4.23 -27.36 16 14 C 0.21 11.10 4.72 85.56 0.40 11.50 16 15 C -0.52 -29.14 8.47 25.60 0.22 -28.93 16 16 H 0.07 3.53 7.13 -2.91 -0.02 3.51 16 17 C 0.00 0.01 5.46 84.66 0.46 0.48 16 18 N -0.94 -56.03 13.29 21.45 0.28 -55.75 16 19 Si 0.97 43.45 29.54 68.60 2.03 45.48 16 20 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 21 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 23 C 0.05 1.87 5.61 86.31 0.48 2.35 16 24 C 0.07 1.80 4.30 86.31 0.37 2.17 16 25 C -0.13 -2.22 9.19 22.38 0.21 -2.02 16 26 C -0.09 -1.22 9.96 22.38 0.22 -1.00 16 27 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.15 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.15 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.43 3.10 8.92 -96.74 -0.86 2.24 16 31 H 0.15 3.07 5.66 -2.91 -0.02 3.06 16 32 H 0.14 2.74 5.81 -2.91 -0.02 2.72 16 33 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.11 2.33 6.82 -2.39 -0.02 2.31 16 35 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.08 3.02 6.79 -2.39 -0.02 3.01 16 37 H -0.04 -2.31 8.12 -2.39 -0.02 -2.33 16 38 H 0.00 0.22 8.03 -2.39 -0.02 0.20 16 39 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 40 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.08 2.66 8.07 -2.38 -0.02 2.64 16 42 H 0.10 2.34 7.17 -2.39 -0.02 2.32 16 43 H 0.06 1.52 7.58 -2.39 -0.02 1.51 16 44 H 0.14 2.15 7.18 -2.91 -0.02 2.13 16 45 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 Total: -1.00 -75.94 370.02 -4.59 -80.53 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 0.15 Total: 9.58 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: 5.37 Total: -13.99 kcal Atomic # 7 Polarization: -104.11 SS G_CDS: -7.55 Total: -111.65 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -4.25 Total: -43.73 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: 34.12 SS G_CDS: -0.34 Total: 33.78 kcal Total: -75.94 -4.59 -80.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767743562.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.268 kcal (2) G-P(sol) polarization free energy of solvation -75.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds