Wall clock time and date at job start Sat Apr 11 2020 05:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00269 * 2 1 4 4 H 1.48496 * 109.46915 * 240.00129 * 3 2 1 5 5 H 1.48500 * 109.47203 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47319 * 119.99686 * 3 2 1 7 7 C 1.37876 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99926 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00140 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47275 * 179.97438 * 9 7 2 11 11 C 1.34626 * 125.24744 * 124.99725 * 10 9 7 12 12 C 1.36761 * 108.05281 * 179.73556 * 11 10 9 13 13 C 1.47399 * 126.69391 * 180.26676 * 12 11 10 14 14 N 1.29785 * 120.00597 * 185.16140 * 13 12 11 15 15 N 1.40092 * 120.00418 * 183.60164 * 14 13 12 16 16 C 1.46765 * 124.34934 * 5.05126 * 15 14 13 17 17 C 1.54661 * 105.38307 * 162.84956 * 16 15 14 18 18 C 1.54629 * 101.68512 * 25.76664 * 17 16 15 19 19 C 1.34418 * 124.34832 * 185.34404 * 15 14 13 20 20 O 1.21328 * 124.94570 * 0.43329 * 19 15 14 21 21 C 1.46499 * 106.61843 * 0.37655 * 12 11 10 22 22 C 1.48215 * 126.49943 * 179.89058 * 21 12 11 23 23 C 1.39844 * 120.91196 * 43.86373 * 22 21 12 24 24 C 1.37939 * 119.01399 * 179.97438 * 23 22 21 25 25 N 1.31938 * 120.89248 * 0.02562 * 24 23 22 26 26 C 1.31950 * 122.01689 * 359.97438 * 25 24 23 27 27 C 1.37946 * 120.88416 * 359.97438 * 26 25 24 28 28 N 1.31547 * 107.00819 * 359.62213 * 21 12 11 29 29 H 0.97006 * 119.99763 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.46694 * 59.99937 * 9 7 2 31 31 H 1.08996 * 109.47462 * 300.00399 * 9 7 2 32 32 H 1.07998 * 125.97848 * 0.02562 * 11 10 9 33 33 H 1.08006 * 119.99879 * 5.15326 * 13 12 11 34 34 H 1.08995 * 110.24317 * 281.97715 * 16 15 14 35 35 H 1.08999 * 110.24474 * 43.98184 * 16 15 14 36 36 H 1.09004 * 111.19497 * 267.59687 * 17 16 15 37 37 H 1.09003 * 110.81955 * 143.77406 * 17 16 15 38 38 H 1.09001 * 110.48925 * 216.30735 * 18 17 16 39 39 H 1.08997 * 110.60136 * 93.71700 * 18 17 16 40 40 H 1.08005 * 120.48975 * 359.95401 * 23 22 21 41 41 H 1.08003 * 119.55577 * 179.97438 * 24 23 22 42 42 H 1.07994 * 119.55638 * 179.97438 * 26 25 24 43 43 H 1.07997 * 120.48954 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0005 11 6 2.2284 -4.6131 0.9012 12 6 3.2499 -5.4587 0.5666 13 6 3.6401 -6.6916 1.2738 14 7 4.6970 -7.3466 0.9015 15 7 5.0258 -8.5578 1.5238 16 6 4.1907 -9.2260 2.5289 17 6 4.7088 -10.6819 2.5906 18 6 6.1719 -10.5139 2.1194 19 6 6.1494 -9.2546 1.2812 20 8 7.0192 -8.9219 0.5036 21 6 3.8823 -4.8987 -0.6304 22 6 5.0395 -5.4652 -1.3631 23 6 5.1171 -6.8348 -1.6347 24 6 6.2116 -7.3200 -2.3198 25 7 7.1757 -6.5113 -2.7163 26 6 7.1413 -5.2135 -2.4805 27 6 6.0830 -4.6447 -1.8026 28 7 3.2249 -3.8008 -0.9351 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5570 -0.8897 31 1 0.6239 -2.5567 0.8902 32 1 1.5566 -4.7301 1.7386 33 1 3.0466 -7.0500 2.1019 34 1 4.3056 -8.7404 3.4979 35 1 3.1453 -9.2117 2.2205 36 1 4.1519 -11.3275 1.9114 37 1 4.6690 -11.0644 3.6106 38 1 6.4789 -11.3683 1.5161 39 1 6.8382 -10.3919 2.9733 40 1 4.3319 -7.5028 -1.3125 41 1 6.2807 -8.3764 -2.5340 42 1 7.9525 -4.5882 -2.8228 43 1 6.0616 -3.5818 -1.6127 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788437221.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:14 Heat of formation + Delta-G solvation = 124.744293 kcal Electronic energy + Delta-G solvation = -28356.845544 eV Core-core repulsion = 24404.946748 eV Total energy + Delta-G solvation = -3951.898796 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.64468 -40.32249 -39.36419 -36.91321 -35.42709 -33.99683 -32.85369 -31.51293 -30.86907 -30.63249 -29.23797 -27.91993 -27.07886 -24.20883 -23.87635 -23.04178 -22.45324 -21.64321 -20.12251 -19.94364 -18.81973 -17.51466 -16.96628 -16.76727 -16.58599 -15.73353 -15.59914 -15.50959 -15.16231 -14.56856 -14.39257 -14.30196 -14.01379 -13.84256 -13.79152 -13.44490 -13.30502 -13.13902 -13.01020 -12.47361 -12.38085 -12.05526 -11.87821 -11.81167 -11.39583 -11.27079 -11.08854 -10.91290 -10.52471 -10.36318 -10.24371 -9.95262 -9.77529 -9.47642 -9.21137 -9.12286 -8.75067 -8.67303 -8.49110 -7.50531 -6.37232 -4.43416 1.24006 1.55606 1.62885 2.32632 2.52027 2.76806 3.16587 3.19284 3.23179 3.29533 3.43601 3.97857 4.06785 4.21223 4.27204 4.38691 4.53000 4.59987 4.81206 4.81862 4.91277 4.99445 5.06528 5.09573 5.25691 5.27583 5.33986 5.38796 5.48130 5.54043 5.54468 5.75280 5.82084 5.94823 6.10153 6.17062 6.29711 6.57407 6.70927 6.82277 6.88709 7.00776 7.06429 7.46636 7.52853 7.68805 7.70441 8.24517 8.34915 8.38325 8.63480 9.23464 10.71527 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013462 B = 0.003056 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.362513 B = 9160.032389 C =10685.350462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.066 3.934 3 Si 0.909 3.091 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.070 0.930 9 C 0.253 3.747 10 N -0.315 5.315 11 C 0.100 3.900 12 C -0.232 4.232 13 C 0.170 3.830 14 N -0.243 5.243 15 N -0.478 5.478 16 C 0.065 3.935 17 C -0.125 4.125 18 C -0.149 4.149 19 C 0.530 3.470 20 O -0.499 6.499 21 C 0.111 3.889 22 C 0.046 3.954 23 C -0.106 4.106 24 C 0.105 3.895 25 N -0.487 5.487 26 C 0.088 3.912 27 C -0.150 4.150 28 N -0.250 5.250 29 H 0.269 0.731 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.179 0.821 33 H 0.116 0.884 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.127 0.873 41 H 0.146 0.854 42 H 0.152 0.848 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.768 -20.147 6.834 21.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.735 3.265 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.088 0.912 9 C 0.136 3.864 10 N -0.092 5.092 11 C -0.054 4.054 12 C -0.248 4.248 13 C -0.038 4.038 14 N -0.045 5.045 15 N -0.299 5.299 16 C -0.060 4.060 17 C -0.163 4.163 18 C -0.191 4.191 19 C 0.317 3.683 20 O -0.371 6.371 21 C -0.057 4.057 22 C 0.036 3.964 23 C -0.127 4.127 24 C -0.052 4.052 25 N -0.196 5.196 26 C -0.068 4.068 27 C -0.171 4.171 28 N -0.071 5.071 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.196 0.804 33 H 0.133 0.867 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.145 0.855 41 H 0.164 0.836 42 H 0.169 0.831 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.359 -19.107 4.550 20.645 hybrid contribution -1.221 0.631 2.055 2.472 sum 5.138 -18.475 6.605 20.282 Atomic orbital electron populations 1.69899 1.06068 1.28000 1.49143 1.24924 0.94997 0.99616 0.94265 0.86366 0.79420 0.81572 0.79103 1.19755 1.20949 1.19946 1.21160 0.93997 0.89160 1.52988 0.91206 1.19917 0.85603 0.81137 0.99763 1.49369 1.23338 1.19204 1.17335 1.22522 0.98155 0.89157 0.95607 1.19014 1.03952 0.99732 1.02119 1.23522 0.92492 0.92302 0.95535 1.75474 1.16838 0.94594 1.17607 1.49698 1.22043 1.18665 1.39482 1.22520 0.96640 0.93782 0.93043 1.22557 0.95055 0.95304 1.03430 1.22329 0.98583 0.96962 1.01206 1.20746 0.80111 0.84809 0.82597 1.90784 1.38546 1.72044 1.35692 1.21727 0.95963 0.93250 0.94770 1.17928 0.91150 0.92851 0.94458 1.21850 0.99566 0.94244 0.97071 1.22353 0.89222 0.99083 0.94541 1.67543 1.27522 1.04957 1.19607 1.22506 0.97078 0.91255 0.96009 1.22187 0.94490 1.01135 0.99262 1.77588 1.00685 1.15636 1.13166 0.92091 0.93143 0.92237 0.80354 0.86661 0.90687 0.90002 0.89631 0.88927 0.87553 0.87550 0.85507 0.83640 0.83115 0.84801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.07 13.29 55.43 0.74 -23.34 16 2 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.91 20.61 29.54 -169.99 -5.02 15.59 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.53 -13.98 9.21 -34.44 -0.32 -14.30 16 8 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 9 C 0.25 5.83 6.22 -5.19 -0.03 5.79 16 10 N -0.32 -6.48 3.64 -62.24 -0.23 -6.70 16 11 C 0.10 1.61 11.34 -16.86 -0.19 1.42 16 12 C -0.23 -3.77 6.24 -103.38 -0.64 -4.42 16 13 C 0.17 2.25 10.48 -14.69 -0.15 2.10 16 14 N -0.24 -3.58 7.51 32.15 0.24 -3.34 16 15 N -0.48 -5.73 4.01 -59.09 -0.24 -5.97 16 16 C 0.07 0.45 6.21 -3.02 -0.02 0.43 16 17 C -0.12 -0.57 7.19 -25.00 -0.18 -0.75 16 18 C -0.15 -1.03 6.86 -26.74 -0.18 -1.21 16 19 C 0.53 6.73 8.18 -10.86 -0.09 6.64 16 20 O -0.50 -8.65 17.95 5.52 0.10 -8.55 16 21 C 0.11 2.12 6.92 -80.56 -0.56 1.56 16 22 C 0.05 0.84 5.51 -104.60 -0.58 0.26 16 23 C -0.11 -1.76 7.66 -39.09 -0.30 -2.06 16 24 C 0.10 1.72 11.17 -17.62 -0.20 1.52 16 25 N -0.49 -8.38 10.35 -13.35 -0.14 -8.52 16 26 C 0.09 1.41 11.17 -17.61 -0.20 1.22 16 27 C -0.15 -2.58 9.89 -39.09 -0.39 -2.97 16 28 N -0.25 -5.41 12.34 34.56 0.43 -4.98 16 29 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.06 1.32 8.05 -51.93 -0.42 0.90 16 32 H 0.18 2.07 8.06 -52.49 -0.42 1.65 16 33 H 0.12 1.08 6.82 -52.48 -0.36 0.72 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.48 7.67 -51.93 -0.40 0.09 16 36 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.13 2.02 6.90 -52.48 -0.36 1.66 16 41 H 0.15 2.10 8.06 -52.48 -0.42 1.68 16 42 H 0.15 1.95 8.06 -52.49 -0.42 1.53 16 43 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 376.30 15.07 5.67 5.67 Total: -1.00 -33.85 376.30 -7.88 -41.73 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -5.31 Total: 1.54 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -4.12 Total: -3.14 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: 0.80 Total: -52.85 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.10 Total: -8.55 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.85 -7.88 -41.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788437221.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.477 kcal (2) G-P(sol) polarization free energy of solvation -33.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds