Wall clock time and date at job start Sat Apr 11 2020 05:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00269 * 2 1 4 4 H 1.48496 * 109.46915 * 240.00129 * 3 2 1 5 5 H 1.48500 * 109.47203 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47319 * 119.99686 * 3 2 1 7 7 C 1.37876 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99926 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00140 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47275 * 179.97438 * 9 7 2 11 11 C 1.34626 * 125.24744 * 124.99725 * 10 9 7 12 12 C 1.36761 * 108.05281 * 179.73556 * 11 10 9 13 13 C 1.47399 * 126.69391 * 180.26676 * 12 11 10 14 14 N 1.29785 * 120.00597 * 185.16140 * 13 12 11 15 15 N 1.40092 * 120.00418 * 183.60164 * 14 13 12 16 16 C 1.46765 * 124.34934 * 5.05126 * 15 14 13 17 17 C 1.54661 * 105.38307 * 162.84956 * 16 15 14 18 18 C 1.54629 * 101.68512 * 25.76664 * 17 16 15 19 19 C 1.34418 * 124.34832 * 185.34404 * 15 14 13 20 20 O 1.21328 * 124.94570 * 0.43329 * 19 15 14 21 21 C 1.46499 * 106.61843 * 0.37655 * 12 11 10 22 22 C 1.48215 * 126.49943 * 179.89058 * 21 12 11 23 23 C 1.39844 * 120.91196 * 43.86373 * 22 21 12 24 24 C 1.37939 * 119.01399 * 179.97438 * 23 22 21 25 25 N 1.31938 * 120.89248 * 0.02562 * 24 23 22 26 26 C 1.31950 * 122.01689 * 359.97438 * 25 24 23 27 27 C 1.37946 * 120.88416 * 359.97438 * 26 25 24 28 28 N 1.31547 * 107.00819 * 359.62213 * 21 12 11 29 29 H 0.97006 * 119.99763 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.46694 * 59.99937 * 9 7 2 31 31 H 1.08996 * 109.47462 * 300.00399 * 9 7 2 32 32 H 1.07998 * 125.97848 * 0.02562 * 11 10 9 33 33 H 1.08006 * 119.99879 * 5.15326 * 13 12 11 34 34 H 1.08995 * 110.24317 * 281.97715 * 16 15 14 35 35 H 1.08999 * 110.24474 * 43.98184 * 16 15 14 36 36 H 1.09004 * 111.19497 * 267.59687 * 17 16 15 37 37 H 1.09003 * 110.81955 * 143.77406 * 17 16 15 38 38 H 1.09001 * 110.48925 * 216.30735 * 18 17 16 39 39 H 1.08997 * 110.60136 * 93.71700 * 18 17 16 40 40 H 1.08005 * 120.48975 * 359.95401 * 23 22 21 41 41 H 1.08003 * 119.55577 * 179.97438 * 24 23 22 42 42 H 1.07994 * 119.55638 * 179.97438 * 26 25 24 43 43 H 1.07997 * 120.48954 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0005 11 6 2.2284 -4.6131 0.9012 12 6 3.2499 -5.4587 0.5666 13 6 3.6401 -6.6916 1.2738 14 7 4.6970 -7.3466 0.9015 15 7 5.0258 -8.5578 1.5238 16 6 4.1907 -9.2260 2.5289 17 6 4.7088 -10.6819 2.5906 18 6 6.1719 -10.5139 2.1194 19 6 6.1494 -9.2546 1.2812 20 8 7.0192 -8.9219 0.5036 21 6 3.8823 -4.8987 -0.6304 22 6 5.0395 -5.4652 -1.3631 23 6 5.1171 -6.8348 -1.6347 24 6 6.2116 -7.3200 -2.3198 25 7 7.1757 -6.5113 -2.7163 26 6 7.1413 -5.2135 -2.4805 27 6 6.0830 -4.6447 -1.8026 28 7 3.2249 -3.8008 -0.9351 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5570 -0.8897 31 1 0.6239 -2.5567 0.8902 32 1 1.5566 -4.7301 1.7386 33 1 3.0466 -7.0500 2.1019 34 1 4.3056 -8.7404 3.4979 35 1 3.1453 -9.2117 2.2205 36 1 4.1519 -11.3275 1.9114 37 1 4.6690 -11.0644 3.6106 38 1 6.4789 -11.3683 1.5161 39 1 6.8382 -10.3919 2.9733 40 1 4.3319 -7.5028 -1.3125 41 1 6.2807 -8.3764 -2.5340 42 1 7.9525 -4.5882 -2.8228 43 1 6.0616 -3.5818 -1.6127 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788437221.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:13 Heat of formation + Delta-G solvation = 103.060540 kcal Electronic energy + Delta-G solvation = -28357.785822 eV Core-core repulsion = 24404.946748 eV Total energy + Delta-G solvation = -3952.839074 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 2.94 seconds Orbital eigenvalues (eV) -42.00830 -41.18256 -40.69930 -37.92822 -36.41085 -35.61869 -34.45412 -32.69472 -32.26265 -31.95822 -30.43765 -28.70870 -28.53625 -25.80397 -25.05066 -24.35266 -23.62621 -22.59892 -21.43468 -21.06667 -19.91713 -18.67964 -18.51330 -17.89222 -17.60983 -17.16376 -17.02908 -16.64587 -16.35129 -16.13815 -15.82881 -15.27864 -15.10582 -14.80515 -14.72380 -14.66543 -14.48295 -14.39806 -14.18057 -13.82359 -13.65041 -13.49699 -13.04268 -12.92205 -12.77268 -12.50491 -12.34585 -12.31103 -11.98513 -11.81769 -11.62057 -11.26933 -10.89444 -10.83076 -10.69300 -10.49483 -10.30684 -9.99461 -9.87404 -8.76578 -8.35351 -6.48855 -0.04717 0.26419 0.43018 1.25879 1.37213 1.39354 1.43547 1.48252 1.65131 1.74914 2.27486 2.33213 2.94259 2.97287 3.28511 3.37400 3.57483 3.59792 3.62763 3.85137 3.98257 4.03416 4.10985 4.14925 4.22658 4.30034 4.41492 4.59322 4.62141 4.66346 4.68765 4.82523 4.85851 4.87763 4.91662 5.02483 5.06624 5.11507 5.20173 5.35735 5.51825 5.56704 5.75200 5.79798 6.05324 6.10683 6.58957 6.59715 6.81733 7.02853 7.21155 7.46135 8.71383 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013462 B = 0.003056 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.362513 B = 9160.032389 C =10685.350462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.025 3.975 3 Si 0.963 3.037 4 H -0.278 1.278 5 H -0.273 1.273 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.051 0.949 9 C 0.268 3.732 10 N -0.340 5.340 11 C 0.110 3.890 12 C -0.229 4.229 13 C 0.174 3.826 14 N -0.280 5.280 15 N -0.481 5.481 16 C 0.056 3.944 17 C -0.110 4.110 18 C -0.139 4.139 19 C 0.512 3.488 20 O -0.560 6.560 21 C 0.102 3.898 22 C 0.030 3.970 23 C -0.099 4.099 24 C 0.101 3.899 25 N -0.500 5.500 26 C 0.090 3.910 27 C -0.164 4.164 28 N -0.302 5.302 29 H 0.273 0.727 30 H 0.025 0.975 31 H 0.071 0.929 32 H 0.227 0.773 33 H 0.160 0.840 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.125 0.875 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.132 0.868 41 H 0.162 0.838 42 H 0.181 0.819 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.578 -22.284 9.149 24.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.176 4.176 3 Si 0.788 3.212 4 H -0.203 1.203 5 H -0.198 1.198 6 H -0.194 1.194 7 C -0.588 4.588 8 H 0.069 0.931 9 C 0.150 3.850 10 N -0.118 5.118 11 C -0.042 4.042 12 C -0.244 4.244 13 C -0.035 4.035 14 N -0.082 5.082 15 N -0.301 5.301 16 C -0.067 4.067 17 C -0.148 4.148 18 C -0.180 4.180 19 C 0.302 3.698 20 O -0.436 6.436 21 C -0.066 4.066 22 C 0.019 3.981 23 C -0.120 4.120 24 C -0.055 4.055 25 N -0.210 5.210 26 C -0.066 4.066 27 C -0.185 4.185 28 N -0.123 5.123 29 H 0.082 0.918 30 H 0.043 0.957 31 H 0.089 0.911 32 H 0.243 0.757 33 H 0.177 0.823 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.144 0.856 38 H 0.136 0.864 39 H 0.141 0.859 40 H 0.150 0.850 41 H 0.180 0.820 42 H 0.198 0.802 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.141 -21.279 6.901 23.198 hybrid contribution -1.085 1.142 1.361 2.081 sum 5.057 -20.137 8.262 22.346 Atomic orbital electron populations 1.69960 1.06986 1.28834 1.49723 1.25610 0.95762 1.02360 0.93909 0.85524 0.78426 0.78441 0.78837 1.20324 1.19802 1.19383 1.21346 0.93346 0.91079 1.53078 0.93109 1.19472 0.85576 0.81089 0.98881 1.49052 1.23687 1.20143 1.18939 1.23264 0.98303 0.87189 0.95419 1.19347 1.03242 1.00750 1.01088 1.23563 0.92827 0.90921 0.96196 1.75304 1.17522 0.96179 1.19168 1.49882 1.22685 1.17644 1.39932 1.22903 0.96692 0.94904 0.92214 1.22620 0.92789 0.93832 1.05542 1.22393 1.00881 0.93989 1.00770 1.21957 0.79355 0.86230 0.82218 1.90739 1.40657 1.73762 1.38432 1.22100 0.95837 0.92876 0.95769 1.18130 0.91297 0.93586 0.95039 1.21828 0.99744 0.93643 0.96829 1.22652 0.88927 0.99857 0.94079 1.67608 1.27859 1.05433 1.20127 1.22934 0.97345 0.91247 0.95106 1.22291 0.95115 1.01052 1.00009 1.77487 1.02200 1.17586 1.14996 0.91788 0.95731 0.91108 0.75701 0.82313 0.89161 0.88510 0.88681 0.85650 0.86403 0.85909 0.85044 0.82032 0.80194 0.85203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.74 13.29 21.45 0.28 -49.46 16 2 C 0.02 1.31 5.46 84.65 0.46 1.77 16 3 Si 0.96 42.56 29.54 68.60 2.03 44.58 16 4 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.55 -29.51 9.21 25.60 0.24 -29.27 16 8 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 9 C 0.27 12.67 6.22 85.63 0.53 13.20 16 10 N -0.34 -14.21 3.64 -350.83 -1.28 -15.49 16 11 C 0.11 3.41 11.34 83.92 0.95 4.36 16 12 C -0.23 -7.24 6.24 -19.06 -0.12 -7.36 16 13 C 0.17 4.22 10.48 87.41 0.92 5.13 16 14 N -0.28 -7.89 7.51 -52.21 -0.39 -8.28 16 15 N -0.48 -10.54 4.01 -459.44 -1.84 -12.39 16 16 C 0.06 0.55 6.21 86.90 0.54 1.09 16 17 C -0.11 -0.50 7.19 31.72 0.23 -0.27 16 18 C -0.14 -1.49 6.86 30.59 0.21 -1.28 16 19 C 0.51 12.39 8.18 87.90 0.72 13.11 16 20 O -0.56 -19.63 17.95 -3.18 -0.06 -19.69 16 21 C 0.10 4.00 6.92 44.00 0.30 4.31 16 22 C 0.03 1.10 5.51 -19.85 -0.11 0.99 16 23 C -0.10 -3.35 7.66 22.59 0.17 -3.18 16 24 C 0.10 3.35 11.17 84.61 0.95 4.30 16 25 N -0.50 -17.29 10.35 -196.16 -2.03 -19.32 16 26 C 0.09 2.91 11.17 84.61 0.95 3.86 16 27 C -0.16 -5.84 9.89 22.59 0.22 -5.62 16 28 N -0.30 -13.59 12.34 -44.57 -0.55 -14.14 16 29 H 0.27 13.98 8.31 -92.70 -0.77 13.21 16 30 H 0.02 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.07 3.14 8.05 -2.39 -0.02 3.12 16 32 H 0.23 4.47 8.06 -2.91 -0.02 4.45 16 33 H 0.16 2.31 6.82 -2.91 -0.02 2.29 16 34 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.10 0.71 7.67 -2.39 -0.02 0.69 16 36 H 0.09 0.31 8.14 -2.38 -0.02 0.29 16 37 H 0.13 -0.15 8.14 -2.39 -0.02 -0.17 16 38 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.13 4.23 6.90 -2.91 -0.02 4.21 16 41 H 0.16 4.68 8.06 -2.91 -0.02 4.66 16 42 H 0.18 4.55 8.06 -2.91 -0.02 4.53 16 43 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -78.21 376.30 4.36 -73.85 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 1.04 Total: 15.18 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: 7.16 Total: 5.15 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -5.81 Total: -119.07 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.06 Total: -19.69 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -78.21 4.36 -73.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788437221.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.909 kcal (2) G-P(sol) polarization free energy of solvation -78.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.94 seconds