Wall clock time and date at job start Sat Apr 11 2020 05:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99919 * 2 1 4 4 H 1.48501 * 109.47231 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47569 * 300.00134 * 3 2 1 6 6 H 1.48499 * 109.46925 * 60.00179 * 3 2 1 7 7 C 1.37878 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99948 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00099 * 0.02562 * 7 2 1 10 10 O 1.42893 * 109.47165 * 180.02562 * 9 7 2 11 11 C 1.42911 * 114.00248 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47147 * 180.02562 * 11 10 9 13 13 O 1.45193 * 109.47242 * 64.99861 * 12 11 10 14 14 C 1.34238 * 116.99757 * 179.97438 * 13 12 11 15 15 O 1.20829 * 119.99832 * 359.97438 * 14 13 12 16 16 C 1.50693 * 120.00070 * 179.97438 * 14 13 12 17 17 N 1.46497 * 109.47284 * 179.97438 * 16 14 13 18 18 C 1.36052 * 123.28215 * 90.00271 * 17 16 14 19 19 O 1.21224 * 126.99760 * 347.23439 * 18 17 16 20 20 C 1.49591 * 106.00641 * 167.27256 * 18 17 16 21 21 H 1.08997 * 109.95526 * 275.19958 * 20 18 17 22 22 C 1.51314 * 119.42211 * 145.96679 * 20 18 17 23 23 C 1.54191 * 106.18263 * 181.63323 * 22 20 18 24 24 C 1.52476 * 111.87398 * 57.50579 * 23 22 20 25 25 C 1.53986 * 112.11808 * 306.95601 * 24 23 22 26 26 C 1.51037 * 106.71234 * 56.35022 * 25 24 23 27 27 H 1.09001 * 109.84017 * 53.43484 * 26 25 24 28 28 C 1.36054 * 123.28992 * 269.97890 * 17 16 14 29 29 O 1.21235 * 127.00230 * 347.38042 * 28 17 16 30 30 H 0.97002 * 119.99834 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.47548 * 59.99491 * 9 7 2 32 32 H 1.09005 * 109.46862 * 299.99906 * 9 7 2 33 33 H 1.09000 * 109.46754 * 59.99490 * 11 10 9 34 34 H 1.09000 * 109.46556 * 300.00106 * 11 10 9 35 35 H 1.08997 * 109.46776 * 304.99246 * 12 11 10 36 36 H 1.09000 * 109.46716 * 184.99886 * 12 11 10 37 37 H 1.09007 * 109.47410 * 59.99831 * 16 14 13 38 38 H 1.09000 * 109.47443 * 300.00512 * 16 14 13 39 39 H 1.09007 * 110.10547 * 62.46855 * 22 20 18 40 40 H 1.08998 * 110.10296 * 300.80198 * 22 20 18 41 41 H 1.09005 * 108.99860 * 296.88863 * 23 22 20 42 42 H 1.09000 * 109.00311 * 178.12307 * 23 22 20 43 43 H 1.09003 * 108.94867 * 67.63771 * 24 23 22 44 44 H 1.08999 * 108.95131 * 186.36394 * 24 23 22 45 45 H 1.09000 * 109.99748 * 175.64951 * 25 24 23 46 46 H 1.09003 * 110.00193 * 297.04737 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 8 2.1797 -3.5852 -0.0015 11 6 1.5652 -4.8754 -0.0019 12 6 2.6481 -5.9561 -0.0010 13 8 3.3984 -5.8885 1.2403 14 6 4.3924 -6.7762 1.4007 15 8 4.6274 -7.5834 0.5328 16 6 5.2152 -6.7662 2.6631 17 7 6.2270 -7.8234 2.5950 18 6 7.4717 -7.6335 2.0795 19 8 7.8543 -6.6862 1.4271 20 6 8.2716 -8.8322 2.4808 21 1 8.6790 -8.6895 3.4817 22 6 9.3368 -9.3620 1.5458 23 6 9.9319 -10.6070 2.2337 24 6 8.8649 -11.6534 2.5363 25 6 7.6822 -11.0637 3.3267 26 6 7.1473 -9.9100 2.5118 27 1 6.9263 -10.2442 1.4981 28 6 6.0140 -9.0908 3.0416 29 8 5.0929 -9.4772 3.7286 30 1 -0.4850 0.8401 -0.0004 31 1 0.6247 -2.5563 -0.8919 32 1 0.6241 -2.5574 0.8881 33 1 0.9454 -4.9823 -0.8922 34 1 0.9446 -4.9825 0.8878 35 1 3.3223 -5.7956 -0.8423 36 1 2.1822 -6.9374 -0.0909 37 1 4.5660 -6.9398 3.5214 38 1 5.7063 -5.7989 2.7691 39 1 10.1118 -8.6102 1.3963 40 1 8.8922 -9.6387 0.5898 41 1 10.4065 -10.3039 3.1671 42 1 10.6855 -11.0472 1.5807 43 1 8.4938 -12.0625 1.5966 44 1 9.3131 -12.4576 3.1197 45 1 6.9073 -11.8191 3.4571 46 1 8.0240 -10.7071 4.2984 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815173265.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:38 Heat of formation + Delta-G solvation = -198.853565 kcal Electronic energy + Delta-G solvation = -29372.144584 eV Core-core repulsion = 25034.319110 eV Total energy + Delta-G solvation = -4337.825474 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 3.37 seconds Orbital eigenvalues (eV) -42.65894 -40.36042 -38.92404 -38.26627 -37.15054 -36.25204 -35.82871 -32.80066 -32.53027 -31.55537 -30.32786 -28.49953 -26.89859 -25.70927 -23.93895 -22.56828 -22.41816 -22.22554 -21.20556 -20.83597 -19.62232 -18.13416 -17.67966 -17.48542 -16.69332 -16.60698 -16.35032 -16.01309 -15.60164 -15.42432 -15.29016 -15.11878 -14.63329 -14.44548 -14.26192 -14.14084 -13.86013 -13.59289 -13.45275 -13.35082 -12.90925 -12.67335 -12.42551 -12.01168 -11.98231 -11.87011 -11.68688 -11.46685 -11.37162 -11.11315 -11.04609 -10.91977 -10.85659 -10.73109 -10.45711 -10.39935 -10.30283 -10.08820 -9.96214 -9.12337 -8.89498 -8.22752 -6.12639 -4.14188 1.17108 1.75336 2.08203 2.14475 2.80577 3.27232 3.28978 3.35433 3.42443 3.76465 3.79768 4.24975 4.31735 4.43336 4.45831 4.54725 4.55357 4.61988 4.70019 4.71434 4.76750 4.82947 4.89687 5.00407 5.15093 5.17133 5.21689 5.24043 5.42049 5.43923 5.47054 5.50244 5.56352 5.66581 5.78581 5.82552 5.88919 6.03578 6.25334 6.46073 6.88511 7.03946 7.33634 7.38501 7.66673 7.77905 8.11472 8.50773 8.98691 9.50645 10.98912 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.021110 B = 0.002042 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.083077 B =13706.675804 C =14422.240849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.062 3.938 12 C 0.076 3.924 13 O -0.335 6.335 14 C 0.450 3.550 15 O -0.509 6.509 16 C 0.107 3.893 17 N -0.582 5.582 18 C 0.544 3.456 19 O -0.456 6.456 20 C -0.128 4.128 21 H 0.126 0.874 22 C -0.098 4.098 23 C -0.120 4.120 24 C -0.121 4.121 25 C -0.097 4.097 26 C -0.131 4.131 27 H 0.127 0.873 28 C 0.550 3.450 29 O -0.466 6.466 30 H 0.264 0.736 31 H 0.006 0.994 32 H 0.008 0.992 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.275 -25.686 7.817 32.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.086 0.914 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.002 3.998 13 O -0.250 6.250 14 C 0.291 3.709 15 O -0.398 6.398 16 C -0.016 4.016 17 N -0.329 5.329 18 C 0.333 3.667 19 O -0.324 6.324 20 C -0.149 4.149 21 H 0.144 0.856 22 C -0.136 4.136 23 C -0.157 4.157 24 C -0.158 4.158 25 C -0.135 4.135 26 C -0.152 4.152 27 H 0.145 0.855 28 C 0.340 3.660 29 O -0.335 6.335 30 H 0.073 0.927 31 H 0.024 0.976 32 H 0.026 0.974 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.156 0.844 38 H 0.155 0.845 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.100 0.900 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 18.041 -25.413 7.543 32.066 hybrid contribution -0.312 1.000 -0.252 1.078 sum 17.729 -24.413 7.291 31.040 Atomic orbital electron populations 1.69972 1.06096 1.27096 1.50612 1.24960 0.95006 0.99491 0.95122 0.86267 0.80054 0.82485 0.77623 1.19443 1.20840 1.20800 1.21086 0.94152 0.89256 1.50727 0.91437 1.20251 0.88748 0.83493 0.95542 1.87924 1.35327 1.12582 1.95233 1.22325 0.93137 0.85453 1.00692 1.23273 0.93654 0.98956 0.83903 1.86574 1.43028 1.53484 1.41906 1.23730 0.79660 0.78587 0.88934 1.90650 1.67693 1.38212 1.43223 1.21118 0.91073 0.93732 0.95653 1.47702 1.14842 1.12899 1.57412 1.20716 0.81478 0.87923 0.76615 1.90814 1.74464 1.34030 1.33068 1.22167 0.96851 0.91903 1.04003 0.85638 1.21325 0.97060 0.97589 0.97651 1.21644 0.98067 0.94991 1.01027 1.21608 0.95365 0.98245 1.00618 1.21209 0.98015 0.96026 0.98214 1.22129 0.92413 0.96697 1.03936 0.85535 1.20622 0.86527 0.81710 0.77169 1.90777 1.33821 1.75384 1.33513 0.92684 0.97579 0.97444 0.91787 0.93074 0.90339 0.90330 0.84443 0.84492 0.89897 0.90492 0.91538 0.91008 0.91523 0.91025 0.90009 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 7 C -0.51 -15.30 9.43 -34.44 -0.32 -15.62 16 8 H 0.07 2.01 7.81 -52.48 -0.41 1.60 16 9 C 0.19 5.34 5.69 36.00 0.20 5.55 16 10 O -0.39 -9.58 10.30 -38.80 -0.40 -9.98 16 11 C 0.06 1.14 6.33 37.16 0.24 1.37 16 12 C 0.08 1.23 5.84 37.16 0.22 1.45 16 13 O -0.34 -5.65 10.19 -42.04 -0.43 -6.08 16 14 C 0.45 6.83 8.03 36.00 0.29 7.12 16 15 O -0.51 -8.68 16.18 -18.75 -0.30 -8.99 16 16 C 0.11 1.21 6.32 -5.20 -0.03 1.18 16 17 N -0.58 -6.25 2.16 -116.81 -0.25 -6.50 16 18 C 0.54 5.75 7.72 -10.94 -0.08 5.66 16 19 O -0.46 -6.46 17.83 5.61 0.10 -6.36 16 20 C -0.13 -0.82 2.40 -91.67 -0.22 -1.04 16 21 H 0.13 0.56 7.85 -51.93 -0.41 0.15 16 22 C -0.10 -0.50 5.86 -26.96 -0.16 -0.66 16 23 C -0.12 -0.39 5.80 -26.38 -0.15 -0.54 16 24 C -0.12 -0.39 5.80 -26.48 -0.15 -0.54 16 25 C -0.10 -0.43 5.84 -27.20 -0.16 -0.59 16 26 C -0.13 -0.88 2.38 -91.83 -0.22 -1.09 16 27 H 0.13 0.84 7.79 -51.93 -0.40 0.44 16 28 C 0.55 5.54 7.75 -10.97 -0.08 5.46 16 29 O -0.47 -5.89 17.68 5.60 0.10 -5.79 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 1.32 8.13 -51.93 -0.42 0.90 16 36 H 0.08 1.07 8.13 -51.93 -0.42 0.65 16 37 H 0.14 1.27 7.89 -51.93 -0.41 0.86 16 38 H 0.14 1.38 8.08 -51.93 -0.42 0.96 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.43 7.89 -51.93 -0.41 0.02 16 41 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 42 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 45 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.29 7.94 -51.93 -0.41 -0.12 16 LS Contribution 390.39 15.07 5.88 5.88 Total: -1.00 -36.81 390.39 -7.41 -44.21 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: -7.08 Total: -6.41 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: -0.74 Total: 9.22 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 0.48 Total: -32.71 kcal Atomic # 8 Polarization: -36.26 SS G_CDS: -0.93 Total: -37.20 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.81 -7.41 -44.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815173265.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.639 kcal (2) G-P(sol) polarization free energy of solvation -36.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.37 seconds