Wall clock time and date at job start Sat Apr 11 2020 05:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99919 * 2 1 4 4 H 1.48501 * 109.47231 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47569 * 300.00134 * 3 2 1 6 6 H 1.48499 * 109.46925 * 60.00179 * 3 2 1 7 7 C 1.37878 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99948 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00099 * 0.02562 * 7 2 1 10 10 O 1.42893 * 109.47165 * 180.02562 * 9 7 2 11 11 C 1.42911 * 114.00248 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47147 * 180.02562 * 11 10 9 13 13 O 1.45193 * 109.47242 * 64.99861 * 12 11 10 14 14 C 1.34238 * 116.99757 * 179.97438 * 13 12 11 15 15 O 1.20829 * 119.99832 * 359.97438 * 14 13 12 16 16 C 1.50693 * 120.00070 * 179.97438 * 14 13 12 17 17 N 1.46497 * 109.47284 * 179.97438 * 16 14 13 18 18 C 1.36052 * 123.28215 * 90.00271 * 17 16 14 19 19 O 1.21224 * 126.99760 * 347.23439 * 18 17 16 20 20 C 1.49591 * 106.00641 * 167.27256 * 18 17 16 21 21 H 1.08997 * 109.95526 * 275.19958 * 20 18 17 22 22 C 1.51314 * 119.42211 * 145.96679 * 20 18 17 23 23 C 1.54191 * 106.18263 * 181.63323 * 22 20 18 24 24 C 1.52476 * 111.87398 * 57.50579 * 23 22 20 25 25 C 1.53986 * 112.11808 * 306.95601 * 24 23 22 26 26 C 1.51037 * 106.71234 * 56.35022 * 25 24 23 27 27 H 1.09001 * 109.84017 * 53.43484 * 26 25 24 28 28 C 1.36054 * 123.28992 * 269.97890 * 17 16 14 29 29 O 1.21235 * 127.00230 * 347.38042 * 28 17 16 30 30 H 0.97002 * 119.99834 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.47548 * 59.99491 * 9 7 2 32 32 H 1.09005 * 109.46862 * 299.99906 * 9 7 2 33 33 H 1.09000 * 109.46754 * 59.99490 * 11 10 9 34 34 H 1.09000 * 109.46556 * 300.00106 * 11 10 9 35 35 H 1.08997 * 109.46776 * 304.99246 * 12 11 10 36 36 H 1.09000 * 109.46716 * 184.99886 * 12 11 10 37 37 H 1.09007 * 109.47410 * 59.99831 * 16 14 13 38 38 H 1.09000 * 109.47443 * 300.00512 * 16 14 13 39 39 H 1.09007 * 110.10547 * 62.46855 * 22 20 18 40 40 H 1.08998 * 110.10296 * 300.80198 * 22 20 18 41 41 H 1.09005 * 108.99860 * 296.88863 * 23 22 20 42 42 H 1.09000 * 109.00311 * 178.12307 * 23 22 20 43 43 H 1.09003 * 108.94867 * 67.63771 * 24 23 22 44 44 H 1.08999 * 108.95131 * 186.36394 * 24 23 22 45 45 H 1.09000 * 109.99748 * 175.64951 * 25 24 23 46 46 H 1.09003 * 110.00193 * 297.04737 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 8 2.1797 -3.5852 -0.0015 11 6 1.5652 -4.8754 -0.0019 12 6 2.6481 -5.9561 -0.0010 13 8 3.3984 -5.8885 1.2403 14 6 4.3924 -6.7762 1.4007 15 8 4.6274 -7.5834 0.5328 16 6 5.2152 -6.7662 2.6631 17 7 6.2270 -7.8234 2.5950 18 6 7.4717 -7.6335 2.0795 19 8 7.8543 -6.6862 1.4271 20 6 8.2716 -8.8322 2.4808 21 1 8.6790 -8.6895 3.4817 22 6 9.3368 -9.3620 1.5458 23 6 9.9319 -10.6070 2.2337 24 6 8.8649 -11.6534 2.5363 25 6 7.6822 -11.0637 3.3267 26 6 7.1473 -9.9100 2.5118 27 1 6.9263 -10.2442 1.4981 28 6 6.0140 -9.0908 3.0416 29 8 5.0929 -9.4772 3.7286 30 1 -0.4850 0.8401 -0.0004 31 1 0.6247 -2.5563 -0.8919 32 1 0.6241 -2.5574 0.8881 33 1 0.9454 -4.9823 -0.8922 34 1 0.9446 -4.9825 0.8878 35 1 3.3223 -5.7956 -0.8423 36 1 2.1822 -6.9374 -0.0909 37 1 4.5660 -6.9398 3.5214 38 1 5.7063 -5.7989 2.7691 39 1 10.1118 -8.6102 1.3963 40 1 8.8922 -9.6387 0.5898 41 1 10.4065 -10.3039 3.1671 42 1 10.6855 -11.0472 1.5807 43 1 8.4938 -12.0625 1.5966 44 1 9.3131 -12.4576 3.1197 45 1 6.9073 -11.8191 3.4571 46 1 8.0240 -10.7071 4.2984 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815173265.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:33 Heat of formation + Delta-G solvation = -222.389287 kcal Electronic energy + Delta-G solvation = -29373.165170 eV Core-core repulsion = 25034.319110 eV Total energy + Delta-G solvation = -4338.846060 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 4.29 seconds Orbital eigenvalues (eV) -43.42642 -41.58893 -39.82698 -38.97540 -38.68269 -37.66339 -36.82070 -34.97803 -33.23363 -31.96682 -31.78870 -29.53255 -28.84630 -26.39875 -24.82420 -24.49724 -23.56623 -23.02647 -22.34260 -21.22327 -20.40726 -19.27985 -18.77083 -18.52355 -18.35306 -17.99078 -17.61681 -17.14338 -16.72129 -16.58813 -16.41862 -16.15284 -16.03601 -15.74462 -15.26485 -14.81697 -14.79033 -14.72862 -14.36400 -14.26845 -13.88838 -13.81521 -13.52783 -13.29706 -13.27402 -12.93634 -12.75253 -12.52499 -12.50125 -12.29349 -12.19353 -12.09833 -12.02085 -11.90557 -11.86527 -11.38939 -11.30161 -11.15867 -10.95249 -10.93594 -10.86021 -10.31022 -8.34877 -6.46960 0.34723 0.82959 0.88605 1.34234 1.38782 1.39944 1.54829 1.74504 2.32534 2.68076 2.98920 2.99831 3.16333 3.20252 3.38465 3.73681 3.82743 3.85674 3.97506 4.01666 4.02890 4.10253 4.11393 4.20440 4.32394 4.32591 4.42173 4.44681 4.45559 4.58923 4.80490 4.81859 4.84479 5.08941 5.13861 5.15342 5.19828 5.21525 5.32895 5.37703 5.44793 5.51887 5.53406 5.92194 6.07928 6.37625 6.47001 6.54867 6.76350 7.24539 8.77432 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.021110 B = 0.002042 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.083077 B =13706.675804 C =14422.240849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.983 3.017 4 H -0.267 1.267 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.058 0.942 9 C 0.207 3.793 10 O -0.410 6.410 11 C 0.054 3.946 12 C 0.079 3.921 13 O -0.351 6.351 14 C 0.447 3.553 15 O -0.532 6.532 16 C 0.105 3.895 17 N -0.586 5.586 18 C 0.540 3.460 19 O -0.499 6.499 20 C -0.117 4.117 21 H 0.153 0.847 22 C -0.099 4.099 23 C -0.114 4.114 24 C -0.117 4.117 25 C -0.093 4.093 26 C -0.123 4.123 27 H 0.127 0.873 28 C 0.549 3.451 29 O -0.493 6.493 30 H 0.272 0.728 31 H -0.007 1.007 32 H -0.009 1.009 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.109 0.891 37 H 0.159 0.841 38 H 0.148 0.852 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.065 0.935 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.964 -26.522 8.660 34.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.806 3.194 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.587 4.587 8 H 0.077 0.923 9 C 0.133 3.867 10 O -0.330 6.330 11 C -0.023 4.023 12 C 0.005 3.995 13 O -0.266 6.266 14 C 0.290 3.710 15 O -0.422 6.422 16 C -0.018 4.018 17 N -0.332 5.332 18 C 0.332 3.668 19 O -0.370 6.370 20 C -0.138 4.138 21 H 0.170 0.830 22 C -0.137 4.137 23 C -0.151 4.151 24 C -0.155 4.155 25 C -0.131 4.131 26 C -0.144 4.144 27 H 0.145 0.855 28 C 0.340 3.660 29 O -0.365 6.365 30 H 0.080 0.920 31 H 0.011 0.989 32 H 0.009 0.991 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.127 0.873 37 H 0.177 0.823 38 H 0.166 0.834 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.105 0.895 45 H 0.098 0.902 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 19.731 -26.290 8.394 33.926 hybrid contribution -0.897 1.180 -0.526 1.573 sum 18.833 -25.110 7.868 32.359 Atomic orbital electron populations 1.70063 1.07616 1.28652 1.50378 1.25949 0.96021 1.03327 0.93893 0.85138 0.78540 0.77339 0.78397 1.19113 1.19551 1.19443 1.21398 0.94022 0.90943 1.52386 0.92328 1.19890 0.88551 0.84305 0.94001 1.87867 1.35600 1.14203 1.95352 1.22646 0.94299 0.83247 1.02076 1.23240 0.93120 0.99420 0.83675 1.86570 1.43741 1.54316 1.42006 1.24469 0.79134 0.77640 0.89797 1.90627 1.68204 1.39025 1.44311 1.21301 0.91344 0.94834 0.94293 1.47941 1.14854 1.13191 1.57255 1.21492 0.81655 0.88360 0.75340 1.90789 1.75153 1.35998 1.35056 1.22284 0.96681 0.89318 1.05494 0.82985 1.21380 0.96513 0.98510 0.97281 1.21621 0.98079 0.93867 1.01547 1.21600 0.94766 0.98491 1.00605 1.21267 0.98391 0.94906 0.98555 1.22191 0.90863 0.97219 1.04094 0.85508 1.21207 0.86832 0.81632 0.76296 1.90760 1.35152 1.75692 1.34853 0.91955 0.98925 0.99079 0.89802 0.92230 0.91183 0.87276 0.82338 0.83432 0.90041 0.91278 0.90314 0.90110 0.91658 0.89535 0.90215 0.89502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.84 13.29 21.45 0.28 -55.56 16 2 C 0.01 0.40 5.46 84.65 0.46 0.86 16 3 Si 0.98 44.95 29.54 68.60 2.03 46.98 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.55 -33.34 9.43 25.60 0.24 -33.10 16 8 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 9 C 0.21 11.75 5.69 71.23 0.41 12.16 16 10 O -0.41 -20.55 10.30 -145.57 -1.50 -22.05 16 11 C 0.05 2.00 6.33 71.98 0.46 2.46 16 12 C 0.08 2.56 5.84 71.98 0.42 2.98 16 13 O -0.35 -11.94 10.19 -48.84 -0.50 -12.43 16 14 C 0.45 13.70 8.03 71.23 0.57 14.27 16 15 O -0.53 -18.32 16.18 21.96 0.36 -17.96 16 16 C 0.11 2.38 6.32 85.63 0.54 2.92 16 17 N -0.59 -12.40 2.16 -758.83 -1.64 -14.04 16 18 C 0.54 11.27 7.72 87.11 0.67 11.94 16 19 O -0.50 -14.43 17.83 -2.86 -0.05 -14.48 16 20 C -0.12 -1.31 2.40 -11.47 -0.03 -1.34 16 21 H 0.15 0.93 7.85 -2.39 -0.02 0.91 16 22 C -0.10 -0.84 5.86 30.45 0.18 -0.66 16 23 C -0.11 -0.41 5.80 30.82 0.18 -0.23 16 24 C -0.12 -0.42 5.80 30.75 0.18 -0.24 16 25 C -0.09 -0.61 5.84 30.29 0.18 -0.44 16 26 C -0.12 -1.47 2.38 -11.58 -0.03 -1.50 16 27 H 0.13 1.56 7.79 -2.39 -0.02 1.54 16 28 C 0.55 10.66 7.75 87.09 0.67 11.33 16 29 O -0.49 -12.21 17.68 -2.89 -0.05 -12.26 16 30 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 31 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 32 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 33 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.07 2.38 8.13 -2.39 -0.02 2.36 16 36 H 0.11 2.87 8.13 -2.39 -0.02 2.85 16 37 H 0.16 2.86 7.89 -2.38 -0.02 2.84 16 38 H 0.15 3.00 8.08 -2.39 -0.02 2.98 16 39 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 40 H 0.07 0.70 7.89 -2.39 -0.02 0.68 16 41 H 0.08 0.14 8.14 -2.38 -0.02 0.12 16 42 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 43 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 44 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 45 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.09 0.40 7.94 -2.39 -0.02 0.38 16 Total: -1.00 -80.51 390.39 5.01 -75.50 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: 0.98 Total: 4.90 kcal Atomic # 6 Polarization: 16.31 SS G_CDS: 5.10 Total: 21.41 kcal Atomic # 7 Polarization: -68.24 SS G_CDS: -1.36 Total: -69.60 kcal Atomic # 8 Polarization: -77.45 SS G_CDS: -1.74 Total: -79.19 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -80.51 5.01 -75.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815173265.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.886 kcal (2) G-P(sol) polarization free energy of solvation -80.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.29 seconds