Wall clock time and date at job start Sat Apr 11 2020 05:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86805 * 119.99787 * 2 1 4 4 H 1.48503 * 109.47024 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46784 * 299.99385 * 3 2 1 6 6 H 1.48499 * 109.47210 * 59.99788 * 3 2 1 7 7 C 1.37875 * 120.00118 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00148 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99853 * 0.02562 * 7 2 1 10 10 O 1.42899 * 109.47261 * 179.97438 * 9 7 2 11 11 C 1.42901 * 114.00657 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47559 * 179.97438 * 11 10 9 13 13 O 1.45195 * 109.46766 * 64.99937 * 12 11 10 14 14 C 1.34239 * 116.99945 * 179.97438 * 13 12 11 15 15 O 1.20825 * 119.99532 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00166 * 180.02562 * 14 13 12 17 17 C 1.53116 * 109.52190 * 180.02562 * 16 14 13 18 18 C 1.53040 * 109.27862 * 177.56359 * 17 16 14 19 19 N 1.46851 * 109.51898 * 300.81641 * 18 17 16 20 20 C 1.46896 * 110.99976 * 185.83872 * 19 18 17 21 21 C 1.53005 * 109.47100 * 76.73622 * 20 19 18 22 22 F 1.39893 * 109.47176 * 53.97886 * 21 20 19 23 23 F 1.39902 * 109.47234 * 173.98277 * 21 20 19 24 24 F 1.39907 * 109.47100 * 293.98361 * 21 20 19 25 25 C 1.46845 * 111.19816 * 61.74181 * 19 18 17 26 26 C 1.53035 * 109.52666 * 298.26049 * 25 19 18 27 27 H 0.97002 * 119.99573 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47718 * 59.99792 * 9 7 2 29 29 H 1.09002 * 109.46998 * 299.99771 * 9 7 2 30 30 H 1.09007 * 109.46608 * 59.99837 * 11 10 9 31 31 H 1.09002 * 109.46599 * 300.00512 * 11 10 9 32 32 H 1.09004 * 109.47050 * 305.00243 * 12 11 10 33 33 H 1.08998 * 109.47241 * 184.99928 * 12 11 10 34 34 H 1.08999 * 109.52006 * 59.87326 * 16 14 13 35 35 H 1.08996 * 109.50598 * 57.61526 * 17 16 14 36 36 H 1.09000 * 109.53532 * 297.51610 * 17 16 14 37 37 H 1.08996 * 109.46060 * 180.80132 * 18 17 16 38 38 H 1.08999 * 109.45501 * 60.82422 * 18 17 16 39 39 H 1.08993 * 109.47537 * 196.73589 * 20 19 18 40 40 H 1.08999 * 109.47293 * 316.74198 * 20 19 18 41 41 H 1.09004 * 109.46137 * 58.27686 * 25 19 18 42 42 H 1.08998 * 109.46434 * 178.23627 * 25 19 18 43 43 H 1.09004 * 109.49721 * 299.23857 * 26 25 19 44 44 H 1.09000 * 109.50459 * 179.12147 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 2.1797 -3.5852 0.0005 11 6 1.5653 -4.8754 0.0011 12 6 2.6482 -5.9562 0.0004 13 8 3.4003 -5.8883 1.2405 14 6 4.3946 -6.7761 1.3996 15 8 4.6288 -7.5827 0.5310 16 6 5.2186 -6.7666 2.6613 17 6 6.2774 -7.8703 2.5892 18 6 7.1495 -7.8167 3.8457 19 7 7.7941 -6.5005 3.9397 20 6 8.7464 -6.4594 5.0575 21 6 10.0267 -7.1992 4.6643 22 9 10.5212 -6.6714 3.4668 23 9 10.9836 -7.0437 5.6729 24 9 9.7458 -8.5591 4.4936 25 6 6.7976 -5.4284 4.0575 26 6 5.9149 -5.4109 2.8076 27 1 -0.4849 0.8401 -0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6241 -2.5566 0.8903 30 1 0.9448 -4.9827 -0.8887 31 1 0.9454 -4.9821 0.8913 32 1 3.3212 -5.7956 -0.8419 33 1 2.1822 -6.9374 -0.0887 34 1 4.5706 -6.9386 3.5208 35 1 6.9001 -7.7202 1.7073 36 1 5.7875 -8.8420 2.5277 37 1 7.9135 -8.5922 3.7908 38 1 6.5282 -7.9805 4.7261 39 1 8.9841 -5.4224 5.2943 40 1 8.3032 -6.9390 5.9302 41 1 6.1781 -5.6035 4.9372 42 1 7.3060 -4.4694 4.1568 43 1 6.5320 -5.2221 1.9290 44 1 5.1655 -4.6251 2.9023 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815193097.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:51 Heat of formation + Delta-G solvation = -293.478103 kcal Electronic energy + Delta-G solvation = -29740.950491 eV Core-core repulsion = 24857.165048 eV Total energy + Delta-G solvation = -4883.785443 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 4.56 seconds Orbital eigenvalues (eV) -50.38744 -47.97538 -47.78406 -40.70254 -39.11895 -37.10407 -36.05692 -34.45545 -32.79297 -31.27630 -30.32128 -29.42479 -26.98332 -25.47803 -23.70887 -23.07553 -22.51471 -22.18314 -21.15774 -19.97295 -18.83459 -18.80771 -17.78463 -17.66250 -16.80992 -16.55716 -16.35749 -15.83159 -15.52916 -15.26992 -14.86962 -14.75840 -14.70464 -14.57928 -14.33372 -14.27265 -14.03458 -13.97617 -13.89797 -13.81951 -13.54584 -12.96349 -12.71938 -12.66146 -12.48924 -12.19330 -11.96670 -11.59346 -11.53939 -11.42457 -11.03290 -10.94743 -10.89638 -10.80017 -10.70599 -10.39072 -10.24535 -10.05079 -9.14158 -9.02186 -8.90692 -8.24192 -6.14663 -4.16320 2.25192 2.34856 2.74604 3.05510 3.26958 3.33622 3.40038 3.47641 3.66556 4.06580 4.27824 4.30327 4.39420 4.52944 4.64413 4.68330 4.71589 4.83923 4.90686 4.98141 5.09801 5.15831 5.21335 5.22103 5.40491 5.44581 5.47129 5.53257 5.69968 5.84463 5.90837 5.96194 6.02922 6.07745 6.30425 6.45154 6.60121 7.02747 7.36892 7.75619 7.84270 8.09823 8.49571 8.96650 9.48646 10.96917 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013212 B = 0.002244 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.806117 B =12475.139831 C =14156.729715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.390 6.390 11 C 0.062 3.938 12 C 0.074 3.926 13 O -0.340 6.340 14 C 0.465 3.535 15 O -0.515 6.515 16 C -0.081 4.081 17 C -0.099 4.099 18 C 0.039 3.961 19 N -0.536 5.536 20 C 0.009 3.991 21 C 0.457 3.543 22 F -0.171 7.171 23 F -0.186 7.186 24 F -0.184 7.184 25 C 0.062 3.938 26 C -0.111 4.111 27 H 0.264 0.736 28 H 0.006 0.994 29 H 0.007 0.993 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.044 0.956 39 H 0.120 0.880 40 H 0.084 0.916 41 H 0.046 0.954 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.554 -17.220 12.613 26.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.086 0.914 9 C 0.120 3.880 10 O -0.310 6.310 11 C -0.016 4.016 12 C 0.000 4.000 13 O -0.255 6.255 14 C 0.308 3.692 15 O -0.403 6.403 16 C -0.101 4.101 17 C -0.137 4.137 18 C -0.089 4.089 19 N -0.260 5.260 20 C -0.121 4.121 21 C 0.402 3.598 22 F -0.152 7.152 23 F -0.168 7.168 24 F -0.166 7.166 25 C -0.065 4.065 26 C -0.148 4.148 27 H 0.073 0.927 28 H 0.024 0.976 29 H 0.025 0.975 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.123 0.877 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.114 0.886 38 H 0.062 0.938 39 H 0.139 0.861 40 H 0.102 0.898 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.100 0.900 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 15.909 -17.219 11.879 26.281 hybrid contribution -0.339 0.517 0.492 0.790 sum 15.571 -16.702 12.370 25.970 Atomic orbital electron populations 1.69973 1.06113 1.27101 1.50609 1.24958 0.94989 0.99480 0.95126 0.86278 0.80048 0.82522 0.77640 1.19425 1.20833 1.20824 1.21079 0.94124 0.89250 1.50729 0.91444 1.20241 0.88758 0.83527 0.95490 1.87915 1.35297 1.12583 1.95221 1.22317 0.93258 0.85493 1.00517 1.23210 0.93671 0.98707 0.84387 1.86593 1.43375 1.54055 1.41502 1.23574 0.78969 0.77893 0.88765 1.90642 1.67900 1.38308 1.43491 1.21129 0.96056 0.98669 0.94212 1.21481 0.95818 0.97739 0.98643 1.22549 0.98018 0.90539 0.97746 1.61745 1.18396 1.05230 1.40672 1.23194 0.90728 1.03341 0.94826 1.20539 0.86535 0.77643 0.75059 1.93220 1.89043 1.85970 1.46981 1.93189 1.67180 1.95450 1.60937 1.93107 1.93170 1.34920 1.95359 1.22161 0.92589 0.94152 0.97595 1.21623 0.98931 0.95403 0.98874 0.92679 0.97637 0.97517 0.92001 0.93246 0.90501 0.90521 0.87654 0.89693 0.90207 0.88601 0.93809 0.86139 0.89790 0.93585 0.89283 0.89955 0.88621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.54 13.29 55.43 0.74 -25.80 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.91 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -14.93 9.43 -34.44 -0.32 -15.25 16 8 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 9 C 0.19 5.23 5.69 36.00 0.20 5.43 16 10 O -0.39 -9.28 10.30 -38.80 -0.40 -9.68 16 11 C 0.06 1.11 6.33 37.16 0.24 1.34 16 12 C 0.07 1.15 5.84 37.16 0.22 1.37 16 13 O -0.34 -5.43 10.12 -42.05 -0.43 -5.86 16 14 C 0.47 6.56 7.26 36.01 0.26 6.82 16 15 O -0.51 -8.33 15.73 -18.75 -0.29 -8.62 16 16 C -0.08 -0.83 2.70 -91.65 -0.25 -1.08 16 17 C -0.10 -0.92 4.68 -26.65 -0.12 -1.04 16 18 C 0.04 0.29 5.23 -3.83 -0.02 0.27 16 19 N -0.54 -4.13 4.40 -234.67 -1.03 -5.16 16 20 C 0.01 0.05 5.12 -3.82 -0.02 0.03 16 21 C 0.46 3.56 3.27 37.16 0.12 3.68 16 22 F -0.17 -1.70 17.13 2.25 0.04 -1.66 16 23 F -0.19 -1.49 17.32 2.25 0.04 -1.45 16 24 F -0.18 -1.56 14.67 2.25 0.03 -1.53 16 25 C 0.06 0.46 5.42 -3.84 -0.02 0.44 16 26 C -0.11 -1.10 5.31 -26.65 -0.14 -1.24 16 27 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 28 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 1.24 8.13 -51.93 -0.42 0.82 16 33 H 0.08 1.00 8.13 -51.93 -0.42 0.58 16 34 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.94 8.04 -51.93 -0.42 0.52 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.10 0.73 5.47 -51.93 -0.28 0.45 16 38 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.12 0.51 7.77 -51.93 -0.40 0.11 16 40 H 0.08 0.35 7.98 -51.93 -0.41 -0.07 16 41 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 42 H 0.09 0.59 7.92 -51.93 -0.41 0.18 16 43 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 376.56 15.07 5.67 5.67 Total: -1.00 -33.20 376.56 -7.16 -40.36 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: -6.55 Total: -5.05 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 0.04 Total: 2.26 kcal Atomic # 7 Polarization: -30.67 SS G_CDS: -0.30 Total: -30.96 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -1.12 Total: -24.15 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 0.11 Total: -4.64 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.20 -7.16 -40.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815193097.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -253.117 kcal (2) G-P(sol) polarization free energy of solvation -33.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -286.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -293.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.56 seconds