Wall clock time and date at job start Sat Apr 11 2020 05:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86805 * 119.99787 * 2 1 4 4 H 1.48503 * 109.47024 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46784 * 299.99385 * 3 2 1 6 6 H 1.48499 * 109.47210 * 59.99788 * 3 2 1 7 7 C 1.37875 * 120.00118 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00148 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99853 * 0.02562 * 7 2 1 10 10 O 1.42899 * 109.47261 * 179.97438 * 9 7 2 11 11 C 1.42901 * 114.00657 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47559 * 179.97438 * 11 10 9 13 13 O 1.45195 * 109.46766 * 64.99937 * 12 11 10 14 14 C 1.34239 * 116.99945 * 179.97438 * 13 12 11 15 15 O 1.20825 * 119.99532 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00166 * 180.02562 * 14 13 12 17 17 C 1.53116 * 109.52190 * 180.02562 * 16 14 13 18 18 C 1.53040 * 109.27862 * 177.56359 * 17 16 14 19 19 N 1.46851 * 109.51898 * 300.81641 * 18 17 16 20 20 C 1.46896 * 110.99976 * 185.83872 * 19 18 17 21 21 C 1.53005 * 109.47100 * 76.73622 * 20 19 18 22 22 F 1.39893 * 109.47176 * 53.97886 * 21 20 19 23 23 F 1.39902 * 109.47234 * 173.98277 * 21 20 19 24 24 F 1.39907 * 109.47100 * 293.98361 * 21 20 19 25 25 C 1.46845 * 111.19816 * 61.74181 * 19 18 17 26 26 C 1.53035 * 109.52666 * 298.26049 * 25 19 18 27 27 H 0.97002 * 119.99573 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47718 * 59.99792 * 9 7 2 29 29 H 1.09002 * 109.46998 * 299.99771 * 9 7 2 30 30 H 1.09007 * 109.46608 * 59.99837 * 11 10 9 31 31 H 1.09002 * 109.46599 * 300.00512 * 11 10 9 32 32 H 1.09004 * 109.47050 * 305.00243 * 12 11 10 33 33 H 1.08998 * 109.47241 * 184.99928 * 12 11 10 34 34 H 1.08999 * 109.52006 * 59.87326 * 16 14 13 35 35 H 1.08996 * 109.50598 * 57.61526 * 17 16 14 36 36 H 1.09000 * 109.53532 * 297.51610 * 17 16 14 37 37 H 1.08996 * 109.46060 * 180.80132 * 18 17 16 38 38 H 1.08999 * 109.45501 * 60.82422 * 18 17 16 39 39 H 1.08993 * 109.47537 * 196.73589 * 20 19 18 40 40 H 1.08999 * 109.47293 * 316.74198 * 20 19 18 41 41 H 1.09004 * 109.46137 * 58.27686 * 25 19 18 42 42 H 1.08998 * 109.46434 * 178.23627 * 25 19 18 43 43 H 1.09004 * 109.49721 * 299.23857 * 26 25 19 44 44 H 1.09000 * 109.50459 * 179.12147 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 2.1797 -3.5852 0.0005 11 6 1.5653 -4.8754 0.0011 12 6 2.6482 -5.9562 0.0004 13 8 3.4003 -5.8883 1.2405 14 6 4.3946 -6.7761 1.3996 15 8 4.6288 -7.5827 0.5310 16 6 5.2186 -6.7666 2.6613 17 6 6.2774 -7.8703 2.5892 18 6 7.1495 -7.8167 3.8457 19 7 7.7941 -6.5005 3.9397 20 6 8.7464 -6.4594 5.0575 21 6 10.0267 -7.1992 4.6643 22 9 10.5212 -6.6714 3.4668 23 9 10.9836 -7.0437 5.6729 24 9 9.7458 -8.5591 4.4936 25 6 6.7976 -5.4284 4.0575 26 6 5.9149 -5.4109 2.8076 27 1 -0.4849 0.8401 -0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6241 -2.5566 0.8903 30 1 0.9448 -4.9827 -0.8887 31 1 0.9454 -4.9821 0.8913 32 1 3.3212 -5.7956 -0.8419 33 1 2.1822 -6.9374 -0.0887 34 1 4.5706 -6.9386 3.5208 35 1 6.9001 -7.7202 1.7073 36 1 5.7875 -8.8420 2.5277 37 1 7.9135 -8.5922 3.7908 38 1 6.5282 -7.9805 4.7261 39 1 8.9841 -5.4224 5.2943 40 1 8.3032 -6.9390 5.9302 41 1 6.1781 -5.6035 4.9372 42 1 7.3060 -4.4694 4.1568 43 1 6.5320 -5.2221 1.9290 44 1 5.1655 -4.6251 2.9023 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815193097.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:45 Heat of formation + Delta-G solvation = -314.344564 kcal Electronic energy + Delta-G solvation = -29741.855328 eV Core-core repulsion = 24857.165048 eV Total energy + Delta-G solvation = -4884.690280 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 5.07 seconds Orbital eigenvalues (eV) -51.00934 -48.58480 -48.45240 -41.78417 -39.88198 -38.72282 -37.45339 -35.19756 -34.93124 -31.98743 -31.68341 -30.18092 -29.00719 -26.31821 -24.60223 -24.38320 -23.82010 -23.38024 -22.15450 -20.77912 -19.46115 -19.42030 -18.81313 -18.68537 -18.35058 -17.89354 -17.68239 -17.12483 -16.56642 -16.39541 -16.12616 -16.04631 -15.54387 -15.38002 -15.26207 -15.17166 -14.90822 -14.79639 -14.67293 -14.61643 -14.51626 -14.23583 -13.93219 -13.73560 -13.36362 -13.26299 -13.17906 -12.89745 -12.77992 -12.70117 -12.47313 -12.33621 -12.21861 -11.99364 -11.83459 -11.69997 -11.45710 -11.30105 -11.25652 -10.89372 -10.27049 -9.52735 -8.32098 -6.44009 1.13046 1.41490 1.42423 1.57278 1.65567 1.80184 2.35037 2.50366 2.95025 3.02056 3.05858 3.13722 3.44539 3.48998 3.67239 3.74858 3.92364 4.05917 4.08869 4.10314 4.21102 4.29164 4.35862 4.40978 4.41965 4.50211 4.59281 4.65788 4.75966 4.80655 4.85805 4.90283 4.99493 5.15989 5.17872 5.25704 5.44588 5.55124 5.76960 5.88913 5.95473 6.49901 6.69017 6.80194 7.27686 8.80275 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013212 B = 0.002244 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.806117 B =12475.139831 C =14156.729715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.982 3.018 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.208 3.792 10 O -0.408 6.408 11 C 0.054 3.946 12 C 0.077 3.923 13 O -0.355 6.355 14 C 0.462 3.538 15 O -0.539 6.539 16 C -0.075 4.075 17 C -0.094 4.094 18 C 0.044 3.956 19 N -0.555 5.555 20 C 0.015 3.985 21 C 0.453 3.547 22 F -0.188 7.188 23 F -0.188 7.188 24 F -0.190 7.190 25 C 0.069 3.931 26 C -0.109 4.109 27 H 0.271 0.729 28 H -0.010 1.010 29 H -0.009 1.009 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.132 0.868 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.138 0.862 40 H 0.109 0.891 41 H 0.068 0.932 42 H 0.098 0.902 43 H 0.059 0.941 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.166 -16.960 14.310 27.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.805 3.195 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.585 4.585 8 H 0.079 0.921 9 C 0.133 3.867 10 O -0.328 6.328 11 C -0.022 4.022 12 C 0.004 3.996 13 O -0.271 6.271 14 C 0.307 3.693 15 O -0.429 6.429 16 C -0.094 4.094 17 C -0.132 4.132 18 C -0.083 4.083 19 N -0.280 5.280 20 C -0.114 4.114 21 C 0.398 3.602 22 F -0.170 7.170 23 F -0.169 7.169 24 F -0.171 7.171 25 C -0.058 4.058 26 C -0.147 4.147 27 H 0.080 0.920 28 H 0.008 0.992 29 H 0.009 0.991 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.125 0.875 34 H 0.150 0.850 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.084 0.916 39 H 0.156 0.844 40 H 0.127 0.873 41 H 0.086 0.914 42 H 0.117 0.883 43 H 0.078 0.922 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 16.523 -16.983 13.581 27.311 hybrid contribution -0.536 0.330 -0.068 0.633 sum 15.987 -16.653 13.513 26.749 Atomic orbital electron populations 1.70069 1.07681 1.28604 1.50542 1.25939 0.95967 1.03316 0.93940 0.85151 0.78686 0.77380 0.78286 1.18860 1.19804 1.19513 1.21397 0.94068 0.90842 1.52166 0.92149 1.19874 0.88568 0.84404 0.93866 1.87863 1.35474 1.14133 1.95321 1.22630 0.94450 0.83373 1.01783 1.23158 0.93115 0.99094 0.84256 1.86595 1.44108 1.54968 1.41455 1.24395 0.78350 0.76829 0.89708 1.90625 1.68402 1.39232 1.44684 1.21279 0.96013 0.99196 0.92925 1.21432 0.95462 0.97473 0.98836 1.22494 0.97894 0.90565 0.97352 1.61617 1.18870 1.05254 1.42276 1.23272 0.89076 1.04424 0.94676 1.20934 0.87284 0.77557 0.74407 1.93186 1.89407 1.86192 1.48173 1.93182 1.67483 1.95439 1.60841 1.93095 1.93184 1.35494 1.95371 1.22103 0.92452 0.94618 0.96610 1.21571 0.98767 0.94748 0.99605 0.92020 0.99181 0.99147 0.90267 0.92389 0.91438 0.87506 0.85040 0.92227 0.89860 0.88774 0.91552 0.84373 0.87264 0.91435 0.88347 0.92176 0.89844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.03 13.29 21.45 0.28 -54.75 16 2 C 0.01 0.39 5.46 84.65 0.46 0.86 16 3 Si 0.98 43.76 29.54 68.60 2.03 45.79 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 7 C -0.55 -32.29 9.43 25.60 0.24 -32.05 16 8 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 9 C 0.21 11.48 5.69 71.23 0.41 11.89 16 10 O -0.41 -19.76 10.30 -145.56 -1.50 -21.26 16 11 C 0.05 1.95 6.33 71.98 0.46 2.40 16 12 C 0.08 2.39 5.84 71.98 0.42 2.81 16 13 O -0.36 -11.32 10.12 -48.85 -0.49 -11.81 16 14 C 0.46 12.96 7.26 71.24 0.52 13.48 16 15 O -0.54 -17.54 15.73 21.97 0.35 -17.19 16 16 C -0.08 -1.45 2.70 -11.46 -0.03 -1.49 16 17 C -0.09 -1.66 4.68 30.65 0.14 -1.52 16 18 C 0.04 0.56 5.23 86.33 0.45 1.02 16 19 N -0.55 -7.39 4.40 -896.37 -3.94 -11.33 16 20 C 0.01 0.13 5.12 86.31 0.44 0.57 16 21 C 0.45 6.39 3.27 71.98 0.24 6.63 16 22 F -0.19 -3.65 17.13 44.97 0.77 -2.88 16 23 F -0.19 -2.73 17.32 44.97 0.78 -1.95 16 24 F -0.19 -2.98 14.67 44.97 0.66 -2.32 16 25 C 0.07 0.86 5.42 86.33 0.47 1.32 16 26 C -0.11 -2.09 5.31 30.64 0.16 -1.93 16 27 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 28 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 29 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 30 H 0.08 2.55 8.14 -2.38 -0.02 2.54 16 31 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.07 2.20 8.13 -2.38 -0.02 2.18 16 33 H 0.11 2.66 8.13 -2.39 -0.02 2.64 16 34 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.06 1.35 8.04 -2.39 -0.02 1.33 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.09 1.27 5.47 -2.39 -0.01 1.26 16 38 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.14 0.74 7.77 -2.39 -0.02 0.73 16 40 H 0.11 0.47 7.98 -2.39 -0.02 0.45 16 41 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 42 H 0.10 1.06 7.92 -2.39 -0.02 1.04 16 43 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 44 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -72.38 376.56 4.31 -68.07 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: 1.01 Total: 5.64 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 4.37 Total: 3.99 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: -3.66 Total: -66.08 kcal Atomic # 8 Polarization: -48.61 SS G_CDS: -1.65 Total: -50.26 kcal Atomic # 9 Polarization: -9.36 SS G_CDS: 2.21 Total: -7.16 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -72.38 4.31 -68.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815193097.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -246.271 kcal (2) G-P(sol) polarization free energy of solvation -72.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -318.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -314.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.08 seconds