Wall clock time and date at job start Sat Apr 11 2020 05:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34226 * 116.99947 * 2 1 4 4 O 1.20826 * 120.00429 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99991 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.47035 * 179.97438 * 5 3 2 7 7 N 1.46501 * 109.46954 * 179.97438 * 6 5 3 8 8 C 1.36934 * 120.00211 * 265.27756 * 7 6 5 9 9 H 1.07999 * 119.99747 * 146.86812 * 8 7 6 10 10 C 1.38815 * 120.00508 * 326.88054 * 8 7 6 11 11 N 1.31624 * 119.99245 * 336.75982 * 10 8 7 12 12 Si 1.86793 * 120.00331 * 156.75769 * 10 8 7 13 13 H 1.48502 * 109.47108 * 89.99833 * 12 10 8 14 14 H 1.48498 * 109.46965 * 209.99792 * 12 10 8 15 15 H 1.48499 * 109.47147 * 330.00010 * 12 10 8 16 16 C 1.46500 * 119.99823 * 85.28594 * 7 6 5 17 17 H 1.09001 * 109.46890 * 359.97438 * 16 7 6 18 18 C 1.52995 * 109.47403 * 119.99567 * 16 7 6 19 19 C 1.50699 * 109.46968 * 239.99980 * 16 7 6 20 20 C 1.35167 * 125.61171 * 139.72075 * 19 16 7 21 21 C 1.40306 * 107.12852 * 179.85109 * 20 19 16 22 22 C 1.50701 * 126.65214 * 180.17731 * 21 20 19 23 23 C 1.36636 * 106.70119 * 0.40100 * 21 20 19 24 24 C 1.46471 * 125.99836 * 179.73408 * 23 21 20 25 25 O 1.21625 * 120.00041 * 359.97438 * 24 23 21 26 26 O 1.34899 * 120.00532 * 180.02562 * 24 23 21 27 27 C 1.45195 * 117.00375 * 179.97438 * 26 24 23 28 28 O 1.33912 * 125.60801 * 320.02107 * 19 16 7 29 29 H 1.08996 * 109.47416 * 59.99696 * 1 2 3 30 30 H 1.09007 * 109.46868 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46970 * 299.99887 * 1 2 3 32 32 H 1.08997 * 109.47104 * 60.00173 * 5 3 2 33 33 H 1.08996 * 109.47190 * 299.99834 * 5 3 2 34 34 H 1.08996 * 109.47318 * 300.00149 * 6 5 3 35 35 H 1.09004 * 109.47102 * 60.00437 * 6 5 3 36 36 H 0.97001 * 119.99280 * 180.02562 * 11 10 8 37 37 H 1.08993 * 109.47350 * 300.00089 * 18 16 7 38 38 H 1.09001 * 109.47116 * 60.00116 * 18 16 7 39 39 H 1.09002 * 109.47125 * 179.97438 * 18 16 7 40 40 H 1.08000 * 126.43699 * 359.94891 * 20 19 16 41 41 H 1.08994 * 109.47103 * 270.27158 * 22 21 20 42 42 H 1.09007 * 109.46778 * 30.26803 * 22 21 20 43 43 H 1.08994 * 109.47224 * 150.26575 * 22 21 20 44 44 H 1.09001 * 109.47027 * 299.99584 * 27 26 24 45 45 H 1.09006 * 109.47108 * 59.99774 * 27 26 24 46 46 H 1.08995 * 109.47299 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 7 5.4631 2.8188 -0.0011 8 6 6.1417 2.9525 1.1808 9 1 7.1150 2.4997 1.2988 10 6 5.5786 3.6700 2.2272 11 7 4.6603 4.5804 1.9817 12 14 6.1239 3.3433 3.9837 13 1 7.2673 4.2293 4.3199 14 1 4.9966 3.6166 4.9109 15 1 6.5414 1.9244 4.1166 16 6 6.2001 2.7525 -1.2654 17 1 5.4963 2.6467 -2.0910 18 6 7.0136 4.0351 -1.4495 19 6 7.1298 1.5667 -1.2434 20 6 7.3676 0.7336 -2.2809 21 6 8.2914 -0.2249 -1.8378 22 6 8.8638 -1.3626 -2.6436 23 6 8.5678 0.0699 -0.5326 24 6 9.4804 -0.6694 0.3425 25 8 10.0726 -1.6439 -0.0806 26 8 9.6636 -0.2702 1.6180 27 6 10.5821 -1.0506 2.4276 28 8 7.8520 1.1616 -0.1909 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.9557 0.7810 -0.8908 33 1 3.9564 0.7806 0.8891 34 1 3.6100 3.2360 -0.8910 35 1 3.6107 3.2364 0.8890 36 1 4.2670 5.0820 2.7129 37 1 6.3412 4.8927 -1.4654 38 1 7.7174 4.1405 -0.6238 39 1 7.5623 3.9856 -2.3900 40 1 6.9300 0.7952 -3.2663 41 1 8.2260 -2.2400 -2.5374 42 1 8.9139 -1.0747 -3.6938 43 1 9.8655 -1.5956 -2.2826 44 1 10.2268 -2.0792 2.4908 45 1 11.5718 -1.0355 1.9710 46 1 10.6376 -0.6229 3.4285 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879473849.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:18 Heat of formation + Delta-G solvation = -135.420108 kcal Electronic energy + Delta-G solvation = -30784.945629 eV Core-core repulsion = 26449.870835 eV Total energy + Delta-G solvation = -4335.074793 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.28896 -39.99037 -39.94153 -36.76828 -36.39799 -35.93709 -33.73844 -32.69823 -31.59364 -29.84078 -28.61748 -28.14039 -27.24138 -26.75537 -24.73900 -23.78815 -22.25986 -21.15701 -20.68244 -19.97358 -19.01484 -17.94570 -17.31751 -16.84029 -16.52691 -16.45497 -16.17442 -16.04941 -15.41398 -14.98535 -14.56991 -14.09597 -14.04569 -13.68721 -13.33206 -13.24455 -13.12693 -12.93895 -12.88371 -12.59653 -12.36927 -12.17082 -12.11293 -12.09852 -11.94419 -11.78864 -11.42562 -11.16571 -11.00236 -10.75476 -10.72675 -10.64846 -10.52426 -10.44324 -10.17909 -10.08248 -9.92356 -9.78704 -9.28218 -8.58573 -8.10232 -6.87669 -5.91988 -3.45502 1.20329 2.64285 2.67536 2.70298 3.12356 3.14137 3.33609 3.42315 3.45572 3.48863 4.40935 4.87049 5.01355 5.04360 5.13366 5.18865 5.20639 5.24665 5.25867 5.30569 5.42791 5.52945 5.64612 5.66561 5.76066 5.78914 5.84889 5.87279 5.96914 5.99694 6.16309 6.18191 6.30492 6.37043 6.38008 6.47948 6.63253 6.72807 6.78263 6.92035 7.05089 7.39988 7.62601 7.85045 7.90404 8.20614 8.36587 9.04172 9.63953 10.15720 11.10335 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.008564 B = 0.004460 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3268.526812 B = 6276.673236 C = 7444.771644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.369 6.369 3 C 0.462 3.538 4 O -0.506 6.506 5 C -0.133 4.133 6 C 0.154 3.846 7 N -0.566 5.566 8 C -0.267 4.267 9 H 0.080 0.920 10 C 0.017 3.983 11 N -0.879 5.879 12 Si 0.894 3.106 13 H -0.284 1.284 14 H -0.289 1.289 15 H -0.274 1.274 16 C 0.225 3.775 17 H 0.088 0.912 18 C -0.147 4.147 19 C 0.082 3.918 20 C -0.259 4.259 21 C -0.068 4.068 22 C -0.093 4.093 23 C -0.109 4.109 24 C 0.557 3.443 25 O -0.504 6.504 26 O -0.344 6.344 27 C 0.037 3.963 28 O -0.115 6.115 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.037 0.963 35 H 0.116 0.884 36 H 0.257 0.743 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.040 0.960 40 H 0.152 0.848 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.709 -9.597 -6.194 11.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.287 6.287 3 C 0.304 3.696 4 O -0.393 6.393 5 C -0.173 4.173 6 C 0.028 3.972 7 N -0.284 5.284 8 C -0.395 4.395 9 H 0.098 0.902 10 C -0.184 4.184 11 N -0.520 5.520 12 Si 0.722 3.278 13 H -0.211 1.211 14 H -0.215 1.215 15 H -0.199 1.199 16 C 0.116 3.884 17 H 0.106 0.894 18 C -0.206 4.206 19 C 0.024 3.976 20 C -0.279 4.279 21 C -0.070 4.070 22 C -0.150 4.150 23 C -0.159 4.159 24 C 0.404 3.596 25 O -0.395 6.395 26 O -0.259 6.259 27 C -0.056 4.056 28 O -0.008 6.008 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.119 0.881 34 H 0.055 0.945 35 H 0.134 0.866 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.059 0.941 40 H 0.169 0.831 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.099 0.901 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.592 -9.307 -5.825 11.281 hybrid contribution 0.058 -0.404 0.938 1.023 sum 2.650 -9.711 -4.887 11.190 Atomic orbital electron populations 1.23144 0.77683 1.02893 1.02229 1.86572 1.22557 1.34852 1.84674 1.24435 0.92738 0.80755 0.71628 1.90643 1.67348 1.36217 1.45129 1.22412 0.84802 1.05584 1.04535 1.20965 0.83077 0.88918 1.04280 1.44042 1.01178 1.82340 1.00794 1.19241 1.03960 1.27575 0.88753 0.90241 1.25095 0.99009 0.95063 0.99225 1.69992 1.29771 1.20979 1.31269 0.86441 0.77837 0.78786 0.84728 1.21058 1.21520 1.19904 1.19285 0.90119 0.87716 0.91325 0.89367 1.22092 1.00640 0.97552 1.00307 1.24873 0.91836 0.97103 0.83804 1.21382 1.06094 0.99012 1.01373 1.20471 0.96829 0.97715 0.92003 1.20408 1.01719 0.94589 0.98257 1.20421 1.05298 0.95945 0.94198 1.19286 0.78664 0.81264 0.80376 1.90848 1.47282 1.26078 1.75324 1.86757 1.60784 1.55280 1.23112 1.23282 0.92021 0.95952 0.94380 1.84493 1.44427 1.35175 1.36716 0.92304 0.88789 0.92226 0.89658 0.88052 0.94453 0.86625 0.93243 0.91555 0.91561 0.94105 0.83071 0.90970 0.91456 0.90094 0.91861 0.91909 0.87965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 101.05 1.07 1.49 16 2 O -0.37 -5.95 10.57 -39.25 -0.41 -6.37 16 3 C 0.46 8.55 7.96 36.01 0.29 8.84 16 4 O -0.51 -10.67 15.73 -18.75 -0.29 -10.96 16 5 C -0.13 -2.49 6.14 -27.88 -0.17 -2.66 16 6 C 0.15 3.37 4.49 -4.04 -0.02 3.35 16 7 N -0.57 -12.58 2.39 -166.98 -0.40 -12.97 16 8 C -0.27 -6.69 8.10 -15.06 -0.12 -6.81 16 9 H 0.08 2.07 5.88 -52.49 -0.31 1.76 16 10 C 0.02 0.45 4.91 -17.43 -0.09 0.36 16 11 N -0.88 -24.00 11.34 55.49 0.63 -23.37 16 12 Si 0.89 21.04 29.61 -169.99 -5.03 16.01 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 15 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 16 C 0.22 4.18 3.22 -69.09 -0.22 3.95 16 17 H 0.09 1.43 7.85 -51.93 -0.41 1.03 16 18 C -0.15 -2.65 9.14 37.16 0.34 -2.31 16 19 C 0.08 1.49 6.06 -35.40 -0.21 1.27 16 20 C -0.26 -4.04 10.72 -39.90 -0.43 -4.47 16 21 C -0.07 -1.09 6.20 -104.42 -0.65 -1.74 16 22 C -0.09 -1.20 9.81 36.01 0.35 -0.85 16 23 C -0.11 -2.00 7.18 -36.85 -0.26 -2.26 16 24 C 0.56 9.83 7.93 34.05 0.27 10.10 16 25 O -0.50 -8.78 14.53 -19.36 -0.28 -9.06 16 26 O -0.34 -5.86 10.58 -42.48 -0.45 -6.31 16 27 C 0.04 0.45 10.57 101.05 1.07 1.52 16 28 O -0.12 -2.35 8.25 4.74 0.04 -2.31 16 29 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 30 H 0.09 0.84 8.14 -51.92 -0.42 0.41 16 31 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 32 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 33 H 0.10 1.99 8.14 -51.93 -0.42 1.56 16 34 H 0.04 0.80 7.98 -51.93 -0.41 0.38 16 35 H 0.12 2.98 5.27 -51.93 -0.27 2.71 16 36 H 0.26 6.89 8.31 -40.82 -0.34 6.56 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.07 1.34 7.66 -51.93 -0.40 0.94 16 39 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.15 1.91 8.06 -52.49 -0.42 1.49 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.08 1.10 6.45 -51.93 -0.33 0.77 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 392.42 15.07 5.91 5.91 Total: -1.00 -30.61 392.42 -5.85 -36.45 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -6.77 Total: 3.20 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 1.21 Total: 9.78 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.23 Total: -36.35 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -1.40 Total: -35.01 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.61 -5.85 -36.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879473849.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.968 kcal (2) G-P(sol) polarization free energy of solvation -30.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds