Wall clock time and date at job start Sat Apr 11 2020 05:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34226 * 116.99947 * 2 1 4 4 O 1.20826 * 120.00429 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99991 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.47035 * 179.97438 * 5 3 2 7 7 N 1.46501 * 109.46954 * 179.97438 * 6 5 3 8 8 C 1.36934 * 120.00211 * 265.27756 * 7 6 5 9 9 H 1.07999 * 119.99747 * 146.86812 * 8 7 6 10 10 C 1.38815 * 120.00508 * 326.88054 * 8 7 6 11 11 N 1.31624 * 119.99245 * 336.75982 * 10 8 7 12 12 Si 1.86793 * 120.00331 * 156.75769 * 10 8 7 13 13 H 1.48502 * 109.47108 * 89.99833 * 12 10 8 14 14 H 1.48498 * 109.46965 * 209.99792 * 12 10 8 15 15 H 1.48499 * 109.47147 * 330.00010 * 12 10 8 16 16 C 1.46500 * 119.99823 * 85.28594 * 7 6 5 17 17 H 1.09001 * 109.46890 * 359.97438 * 16 7 6 18 18 C 1.52995 * 109.47403 * 119.99567 * 16 7 6 19 19 C 1.50699 * 109.46968 * 239.99980 * 16 7 6 20 20 C 1.35167 * 125.61171 * 139.72075 * 19 16 7 21 21 C 1.40306 * 107.12852 * 179.85109 * 20 19 16 22 22 C 1.50701 * 126.65214 * 180.17731 * 21 20 19 23 23 C 1.36636 * 106.70119 * 0.40100 * 21 20 19 24 24 C 1.46471 * 125.99836 * 179.73408 * 23 21 20 25 25 O 1.21625 * 120.00041 * 359.97438 * 24 23 21 26 26 O 1.34899 * 120.00532 * 180.02562 * 24 23 21 27 27 C 1.45195 * 117.00375 * 179.97438 * 26 24 23 28 28 O 1.33912 * 125.60801 * 320.02107 * 19 16 7 29 29 H 1.08996 * 109.47416 * 59.99696 * 1 2 3 30 30 H 1.09007 * 109.46868 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46970 * 299.99887 * 1 2 3 32 32 H 1.08997 * 109.47104 * 60.00173 * 5 3 2 33 33 H 1.08996 * 109.47190 * 299.99834 * 5 3 2 34 34 H 1.08996 * 109.47318 * 300.00149 * 6 5 3 35 35 H 1.09004 * 109.47102 * 60.00437 * 6 5 3 36 36 H 0.97001 * 119.99280 * 180.02562 * 11 10 8 37 37 H 1.08993 * 109.47350 * 300.00089 * 18 16 7 38 38 H 1.09001 * 109.47116 * 60.00116 * 18 16 7 39 39 H 1.09002 * 109.47125 * 179.97438 * 18 16 7 40 40 H 1.08000 * 126.43699 * 359.94891 * 20 19 16 41 41 H 1.08994 * 109.47103 * 270.27158 * 22 21 20 42 42 H 1.09007 * 109.46778 * 30.26803 * 22 21 20 43 43 H 1.08994 * 109.47224 * 150.26575 * 22 21 20 44 44 H 1.09001 * 109.47027 * 299.99584 * 27 26 24 45 45 H 1.09006 * 109.47108 * 59.99774 * 27 26 24 46 46 H 1.08995 * 109.47299 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 7 5.4631 2.8188 -0.0011 8 6 6.1417 2.9525 1.1808 9 1 7.1150 2.4997 1.2988 10 6 5.5786 3.6700 2.2272 11 7 4.6603 4.5804 1.9817 12 14 6.1239 3.3433 3.9837 13 1 7.2673 4.2293 4.3199 14 1 4.9966 3.6166 4.9109 15 1 6.5414 1.9244 4.1166 16 6 6.2001 2.7525 -1.2654 17 1 5.4963 2.6467 -2.0910 18 6 7.0136 4.0351 -1.4495 19 6 7.1298 1.5667 -1.2434 20 6 7.3676 0.7336 -2.2809 21 6 8.2914 -0.2249 -1.8378 22 6 8.8638 -1.3626 -2.6436 23 6 8.5678 0.0699 -0.5326 24 6 9.4804 -0.6694 0.3425 25 8 10.0726 -1.6439 -0.0806 26 8 9.6636 -0.2702 1.6180 27 6 10.5821 -1.0506 2.4276 28 8 7.8520 1.1616 -0.1909 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.9557 0.7810 -0.8908 33 1 3.9564 0.7806 0.8891 34 1 3.6100 3.2360 -0.8910 35 1 3.6107 3.2364 0.8890 36 1 4.2670 5.0820 2.7129 37 1 6.3412 4.8927 -1.4654 38 1 7.7174 4.1405 -0.6238 39 1 7.5623 3.9856 -2.3900 40 1 6.9300 0.7952 -3.2663 41 1 8.2260 -2.2400 -2.5374 42 1 8.9139 -1.0747 -3.6938 43 1 9.8655 -1.5956 -2.2826 44 1 10.2268 -2.0792 2.4908 45 1 11.5718 -1.0355 1.9710 46 1 10.6376 -0.6229 3.4285 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879473849.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:12 Heat of formation + Delta-G solvation = -151.679287 kcal Electronic energy + Delta-G solvation = -30785.650680 eV Core-core repulsion = 26449.870835 eV Total energy + Delta-G solvation = -4335.779844 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 4.92 seconds Orbital eigenvalues (eV) -43.63446 -41.40811 -41.22181 -38.36155 -37.66884 -37.38475 -35.00846 -34.34633 -33.32019 -31.26177 -30.02552 -29.28633 -28.49558 -27.85375 -26.49608 -25.19384 -23.72756 -22.47432 -22.12768 -21.46661 -20.42603 -19.26495 -18.83418 -18.25653 -17.94039 -17.78698 -17.57238 -17.41850 -16.87511 -16.58482 -16.16531 -15.66009 -15.45945 -15.02392 -14.76953 -14.45780 -14.30565 -14.19643 -13.94888 -13.92127 -13.73832 -13.65334 -13.52539 -13.34499 -13.12366 -13.02219 -12.93405 -12.84337 -12.60829 -12.41849 -12.33159 -11.91555 -11.89160 -11.87529 -11.78637 -11.68920 -11.54652 -11.44420 -10.53121 -10.49720 -9.44086 -8.71733 -7.86880 -5.40990 -0.12331 1.23893 1.36399 1.42430 1.45405 1.47636 1.56960 1.83193 1.85119 2.18381 2.51698 3.24038 3.46143 3.69117 3.84980 3.95389 4.03257 4.22467 4.29244 4.29807 4.33874 4.35268 4.38571 4.43924 4.50791 4.62135 4.63452 4.69042 4.71200 4.77840 4.80243 4.82659 4.98195 5.04902 5.07877 5.18761 5.23575 5.29519 5.41656 5.54074 5.57158 5.77622 5.88404 6.08852 6.47065 6.61780 6.80688 7.14127 7.79251 8.27244 9.12145 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.008564 B = 0.004460 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3268.526812 B = 6276.673236 C = 7444.771644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.368 6.368 3 C 0.469 3.531 4 O -0.537 6.537 5 C -0.121 4.121 6 C 0.159 3.841 7 N -0.579 5.579 8 C -0.250 4.250 9 H 0.069 0.931 10 C -0.029 4.029 11 N -0.908 5.908 12 Si 0.937 3.063 13 H -0.285 1.285 14 H -0.294 1.294 15 H -0.274 1.274 16 C 0.223 3.777 17 H 0.119 0.881 18 C -0.139 4.139 19 C 0.058 3.942 20 C -0.235 4.235 21 C -0.061 4.061 22 C -0.090 4.090 23 C -0.138 4.138 24 C 0.554 3.446 25 O -0.508 6.508 26 O -0.367 6.367 27 C 0.029 3.971 28 O -0.149 6.149 29 H 0.064 0.936 30 H 0.134 0.866 31 H 0.054 0.946 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.039 0.961 35 H 0.077 0.923 36 H 0.250 0.750 37 H 0.052 0.948 38 H 0.035 0.965 39 H 0.076 0.924 40 H 0.190 0.810 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.883 -11.762 -8.302 14.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C 0.313 3.687 4 O -0.427 6.427 5 C -0.161 4.161 6 C 0.033 3.967 7 N -0.298 5.298 8 C -0.380 4.380 9 H 0.086 0.914 10 C -0.227 4.227 11 N -0.552 5.552 12 Si 0.766 3.234 13 H -0.212 1.212 14 H -0.220 1.220 15 H -0.200 1.200 16 C 0.115 3.885 17 H 0.136 0.864 18 C -0.198 4.198 19 C 0.002 3.998 20 C -0.254 4.254 21 C -0.063 4.063 22 C -0.146 4.146 23 C -0.187 4.187 24 C 0.401 3.599 25 O -0.400 6.400 26 O -0.284 6.284 27 C -0.064 4.064 28 O -0.044 6.044 29 H 0.083 0.917 30 H 0.152 0.848 31 H 0.073 0.927 32 H 0.129 0.871 33 H 0.109 0.891 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.054 0.946 39 H 0.095 0.905 40 H 0.207 0.793 41 H 0.102 0.898 42 H 0.115 0.885 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.783 -11.511 -7.946 14.262 hybrid contribution 0.034 0.153 1.523 1.531 sum 2.818 -11.358 -6.424 13.349 Atomic orbital electron populations 1.23527 0.75206 1.05578 1.02341 1.86533 1.24886 1.33112 1.83971 1.24226 0.92573 0.81004 0.70912 1.90637 1.67947 1.37386 1.46717 1.22113 0.85429 1.03365 1.05212 1.20683 0.82995 0.90601 1.02434 1.44107 1.01344 1.82826 1.01475 1.19250 1.03126 1.25649 0.90023 0.91400 1.25567 0.99887 0.95672 1.01541 1.70108 1.31429 1.22379 1.31243 0.85749 0.77112 0.78331 0.82224 1.21166 1.22010 1.19965 1.19519 0.90462 0.88088 0.90385 0.86382 1.21999 0.99893 0.96988 1.00893 1.24691 0.92761 0.97868 0.84480 1.21750 1.04655 0.97074 1.01946 1.20942 0.95987 0.98129 0.91213 1.20495 1.01044 0.93781 0.99322 1.20844 1.06152 0.96110 0.95607 1.19319 0.78652 0.81237 0.80642 1.90826 1.47548 1.26171 1.75478 1.86732 1.61916 1.56485 1.23254 1.23632 0.91724 0.96178 0.94842 1.84403 1.45496 1.36344 1.38116 0.91740 0.84824 0.92683 0.87058 0.89143 0.94279 0.90522 0.94056 0.92844 0.94615 0.90540 0.79319 0.89822 0.88487 0.91060 0.91062 0.90779 0.85738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.56 113.37 1.20 1.79 16 2 O -0.37 -11.19 10.57 -51.38 -0.54 -11.73 16 3 C 0.47 17.00 7.96 71.24 0.57 17.57 16 4 O -0.54 -22.65 15.73 21.96 0.35 -22.31 16 5 C -0.12 -4.46 6.14 29.85 0.18 -4.27 16 6 C 0.16 7.03 4.49 86.38 0.39 7.42 16 7 N -0.58 -25.86 2.39 -682.21 -1.63 -27.49 16 8 C -0.25 -12.88 8.10 84.03 0.68 -12.20 16 9 H 0.07 3.65 5.88 -2.91 -0.02 3.63 16 10 C -0.03 -1.57 4.91 84.86 0.42 -1.15 16 11 N -0.91 -51.54 11.34 21.65 0.25 -51.29 16 12 Si 0.94 44.60 29.61 68.60 2.03 46.63 16 13 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 14 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 15 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 16 C 0.22 7.99 3.22 44.24 0.14 8.13 16 17 H 0.12 3.49 7.85 -2.39 -0.02 3.47 16 18 C -0.14 -4.91 9.14 71.98 0.66 -4.25 16 19 C 0.06 2.03 6.06 24.98 0.15 2.18 16 20 C -0.24 -6.49 10.72 22.07 0.24 -6.25 16 21 C -0.06 -1.78 6.20 -19.74 -0.12 -1.90 16 22 C -0.09 -2.01 9.81 71.24 0.70 -1.31 16 23 C -0.14 -4.95 7.18 24.04 0.17 -4.78 16 24 C 0.55 19.34 7.93 69.97 0.55 19.90 16 25 O -0.51 -17.20 14.53 19.43 0.28 -16.92 16 26 O -0.37 -12.54 10.58 -56.76 -0.60 -13.14 16 27 C 0.03 0.66 10.57 113.37 1.20 1.86 16 28 O -0.15 -6.05 8.25 -4.88 -0.04 -6.09 16 29 H 0.06 1.38 8.13 -2.39 -0.02 1.36 16 30 H 0.13 1.91 8.14 -2.38 -0.02 1.89 16 31 H 0.05 1.29 8.13 -2.38 -0.02 1.27 16 32 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 33 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 34 H 0.04 1.67 7.98 -2.39 -0.02 1.65 16 35 H 0.08 4.09 5.27 -2.38 -0.01 4.08 16 36 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 37 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.03 1.45 7.66 -2.39 -0.02 1.43 16 39 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.19 3.68 8.06 -2.91 -0.02 3.66 16 41 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 43 H 0.07 1.76 6.45 -2.39 -0.02 1.75 16 44 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 46 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -69.17 392.42 8.21 -60.97 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.99 Total: 18.65 kcal Atomic # 6 Polarization: 15.61 SS G_CDS: 7.12 Total: 22.73 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -1.38 Total: -78.78 kcal Atomic # 8 Polarization: -69.64 SS G_CDS: -0.56 Total: -70.19 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -69.17 8.21 -60.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879473849.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.712 kcal (2) G-P(sol) polarization free energy of solvation -69.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.92 seconds