Wall clock time and date at job start Sat Apr 11 2020 05:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 N 1.49353 * 108.33176 * 2 1 4 4 O 1.42099 * 114.65048 * 121.10308 * 2 1 3 5 5 N 1.65595 * 108.33138 * 242.20955 * 2 1 3 6 6 C 1.47082 * 120.88430 * 359.71867 * 5 2 1 7 7 C 1.53695 * 108.27521 * 128.75188 * 6 5 2 8 8 N 1.46897 * 109.25658 * 54.08633 * 7 6 5 9 9 C 1.46905 * 111.00116 * 172.60313 * 8 7 6 10 10 C 1.50692 * 109.47339 * 314.30378 * 9 8 7 11 11 C 1.38305 * 119.93240 * 269.72620 * 10 9 8 12 12 C 1.38094 * 120.06759 * 179.72314 * 11 10 9 13 13 C 1.38874 * 119.93325 * 0.54771 * 12 11 10 14 14 O 1.35756 * 120.07313 * 179.74809 * 13 12 11 15 15 C 1.34827 * 117.00232 * 174.44311 * 14 13 12 16 16 H 1.07995 * 120.00154 * 5.05506 * 15 14 13 17 17 C 1.38650 * 119.99775 * 185.05322 * 15 14 13 18 18 N 1.31554 * 120.00588 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99815 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47444 * 90.00357 * 19 17 15 21 21 H 1.48508 * 109.47109 * 210.00210 * 19 17 15 22 22 H 1.48507 * 109.47310 * 329.99789 * 19 17 15 23 23 C 1.38877 * 119.86248 * 359.72669 * 13 12 11 24 24 C 1.38098 * 119.93331 * 359.97438 * 23 13 12 25 25 C 1.46896 * 111.27066 * 296.75289 * 8 7 6 26 26 C 1.47081 * 120.87932 * 179.97438 * 5 2 1 27 27 H 1.09004 * 109.46762 * 177.79206 * 1 2 3 28 28 H 1.09003 * 109.47127 * 297.78828 * 1 2 3 29 29 H 1.08990 * 109.47127 * 57.78726 * 1 2 3 30 30 H 0.97002 * 119.99392 * 304.93296 * 3 2 1 31 31 H 1.08991 * 109.62722 * 248.52348 * 6 5 2 32 32 H 1.09001 * 109.62260 * 9.10604 * 6 5 2 33 33 H 1.09001 * 109.64918 * 294.08600 * 7 6 5 34 34 H 1.09004 * 109.44620 * 173.96543 * 7 6 5 35 35 H 1.09002 * 109.46537 * 74.30723 * 9 8 7 36 36 H 1.08999 * 109.47331 * 194.30074 * 9 8 7 37 37 H 1.07997 * 119.96180 * 359.97438 * 11 10 9 38 38 H 1.08005 * 120.03668 * 180.27103 * 12 11 10 39 39 H 0.97002 * 120.00872 * 179.97438 * 18 17 15 40 40 H 1.08001 * 120.03530 * 179.97438 * 23 13 12 41 41 H 1.08000 * 119.97311 * 180.02562 * 24 23 13 42 42 H 1.08992 * 109.49532 * 303.14598 * 25 8 7 43 43 H 1.09002 * 109.51927 * 183.07140 * 25 8 7 44 44 H 1.08997 * 109.63167 * 350.90173 * 26 5 2 45 45 H 1.09000 * 109.62848 * 111.28287 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 7 2.2838 1.4177 0.0000 4 8 2.4067 -0.6672 1.1058 5 7 2.3349 -0.7329 -1.3906 6 6 1.3741 -1.2576 -2.3729 7 6 1.7457 -0.6997 -3.7560 8 7 3.1538 -1.0069 -4.0400 9 6 3.5030 -0.6473 -5.4209 10 6 2.4284 -1.1400 -6.3554 11 6 2.5229 -2.4030 -6.9109 12 6 1.5368 -2.8595 -7.7632 13 6 0.4553 -2.0447 -8.0712 14 8 -0.5131 -2.4886 -8.9127 15 6 -1.5906 -1.6953 -9.0789 16 1 -1.6181 -0.7186 -8.6189 17 6 -2.6631 -2.1335 -9.8405 18 7 -2.6298 -3.3234 -10.4005 19 14 -4.1556 -1.0341 -10.0714 20 1 -3.9654 -0.1879 -11.2767 21 1 -5.3678 -1.8747 -10.2429 22 1 -4.3203 -0.1658 -8.8779 23 6 0.3661 -0.7747 -7.5162 24 6 1.3523 -0.3262 -6.6598 25 6 4.0478 -0.3440 -3.0813 26 6 3.7705 -0.8814 -1.6736 27 1 -0.3633 -1.0270 -0.0396 28 1 -0.3633 0.4791 0.9092 29 1 -0.3633 0.5478 -0.8694 30 1 1.9797 2.0294 -0.6887 31 1 1.4240 -2.3463 -2.3884 32 1 0.3667 -0.9381 -2.1064 33 1 1.5998 0.3805 -3.7668 34 1 1.1128 -1.1598 -4.5149 35 1 3.5878 0.4363 -5.5037 36 1 4.4547 -1.1075 -5.6867 37 1 3.3666 -3.0344 -6.6748 38 1 1.6089 -3.8476 -8.1933 39 1 -3.3803 -3.6301 -10.9330 40 1 -0.4735 -0.1385 -7.7541 41 1 1.2834 0.6611 -6.2275 42 1 3.8698 0.7311 -3.1014 43 1 5.0846 -0.5462 -3.3501 44 1 4.3482 -0.3132 -0.9445 45 1 4.0474 -1.9342 -1.6196 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879943428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:35 Heat of formation + Delta-G solvation = -4.641201 kcal Electronic energy + Delta-G solvation = -27358.198895 eV Core-core repulsion = 23503.840723 eV Total energy + Delta-G solvation = -3854.358172 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.96929 -39.89249 -38.21212 -37.37244 -35.56155 -34.23948 -33.10001 -32.47299 -31.73640 -31.29723 -30.03764 -28.11097 -27.20821 -24.80994 -24.61841 -23.55298 -21.97389 -21.33249 -19.82085 -19.65986 -18.81472 -18.66036 -17.38514 -16.61048 -16.45301 -16.42351 -16.22696 -16.20661 -15.71699 -15.44429 -15.40084 -15.27698 -15.00243 -14.62908 -14.35387 -14.18760 -14.08201 -14.00048 -13.57086 -13.33179 -13.17083 -12.92843 -12.84783 -12.84272 -12.55267 -12.34848 -12.25186 -12.16535 -12.11592 -11.88448 -11.76572 -11.14030 -10.78077 -10.76325 -10.28102 -9.94527 -9.71750 -9.21056 -8.81888 -8.45388 -6.13316 -0.89973 0.63211 0.69577 1.36440 1.45142 1.53468 1.83257 2.18661 2.75701 2.76072 3.04718 3.19136 3.31657 3.55692 3.58945 3.91643 4.03871 4.07758 4.12885 4.14246 4.22717 4.28268 4.32722 4.37370 4.44971 4.56921 4.64586 4.72681 4.80234 4.85361 4.90314 4.92527 4.99544 5.11454 5.12715 5.14689 5.18784 5.34156 5.50725 5.61045 5.74365 5.83700 6.05059 6.14351 6.19477 6.28400 6.44804 6.99724 7.81724 8.77919 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015531 B = 0.002597 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.410790 B =10778.097436 C =11959.610878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.649 4.649 2 S 2.520 3.480 3 N -1.279 6.279 4 O -0.990 6.990 5 N -1.006 6.006 6 C 0.109 3.891 7 C 0.036 3.964 8 N -0.538 5.538 9 C 0.116 3.884 10 C -0.157 4.157 11 C -0.046 4.046 12 C -0.207 4.207 13 C 0.116 3.884 14 O -0.234 6.234 15 C -0.410 4.410 16 H 0.104 0.896 17 C -0.024 4.024 18 N -0.922 5.922 19 Si 1.017 2.983 20 H -0.265 1.265 21 H -0.274 1.274 22 H -0.250 1.250 23 C -0.240 4.240 24 C -0.057 4.057 25 C 0.048 3.952 26 C 0.138 3.862 27 H 0.138 0.862 28 H 0.143 0.857 29 H 0.154 0.846 30 H 0.390 0.610 31 H 0.073 0.927 32 H 0.113 0.887 33 H 0.046 0.954 34 H 0.081 0.919 35 H 0.047 0.953 36 H 0.091 0.909 37 H 0.143 0.857 38 H 0.108 0.892 39 H 0.272 0.728 40 H 0.118 0.882 41 H 0.136 0.864 42 H 0.043 0.957 43 H 0.098 0.902 44 H 0.082 0.918 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.718 8.881 17.152 20.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.616 3.384 3 N -1.099 6.099 4 O -0.972 6.972 5 N -0.839 5.839 6 C -0.018 4.018 7 C -0.093 4.093 8 N -0.263 5.263 9 C -0.010 4.010 10 C -0.158 4.158 11 C -0.064 4.064 12 C -0.226 4.226 13 C 0.066 3.934 14 O -0.141 6.141 15 C -0.486 4.486 16 H 0.121 0.879 17 C -0.221 4.221 18 N -0.561 5.561 19 Si 0.836 3.164 20 H -0.190 1.190 21 H -0.199 1.199 22 H -0.173 1.173 23 C -0.259 4.259 24 C -0.075 4.075 25 C -0.081 4.081 26 C 0.012 3.988 27 H 0.156 0.844 28 H 0.161 0.839 29 H 0.172 0.828 30 H 0.213 0.787 31 H 0.091 0.909 32 H 0.131 0.869 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.065 0.935 36 H 0.109 0.891 37 H 0.160 0.840 38 H 0.126 0.874 39 H 0.081 0.919 40 H 0.136 0.864 41 H 0.153 0.847 42 H 0.061 0.939 43 H 0.117 0.883 44 H 0.101 0.899 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.561 7.792 18.237 21.601 hybrid contribution -1.833 0.868 -1.590 2.577 sum 6.728 8.660 16.648 19.935 Atomic orbital electron populations 1.30450 1.23894 1.12856 1.13460 1.09550 0.78893 0.76067 0.73893 1.72791 1.66949 1.18737 1.51429 1.93455 1.75587 1.76817 1.51300 1.58120 1.12913 1.76918 1.35944 1.21974 0.91989 1.00181 0.87608 1.22641 0.90348 0.99140 0.97211 1.61963 1.03178 1.59021 1.02163 1.20849 0.96303 0.98338 0.85539 1.19534 0.98188 0.95261 1.02838 1.20813 0.96739 0.95408 0.93488 1.20445 0.96134 1.00224 1.05798 1.19935 0.89914 0.93722 0.89845 1.83950 1.27451 1.46631 1.56070 1.21807 0.93654 0.99587 1.33595 0.87915 1.26564 1.01647 0.98336 0.95539 1.70183 1.33091 1.19980 1.32819 0.84613 0.75078 0.77002 0.79700 1.19048 1.19851 1.17313 1.21194 1.03120 0.96523 1.05081 1.20899 0.92284 0.99205 0.95136 1.22446 0.97992 0.96365 0.91309 1.21376 0.79537 1.01812 0.96065 0.84390 0.83864 0.82817 0.78708 0.90851 0.86893 0.93581 0.90121 0.93453 0.89051 0.83973 0.87402 0.91931 0.86432 0.84663 0.93919 0.88334 0.89946 0.91150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -4.15 9.26 113.37 1.05 -3.10 16 2 S 2.52 39.00 5.35 -56.49 -0.30 38.70 16 3 N -1.28 -24.06 14.07 37.02 0.52 -23.54 16 4 O -0.99 -26.90 18.14 -148.98 -2.70 -29.60 16 5 N -1.01 -14.50 3.38 -511.40 -1.73 -16.23 16 6 C 0.11 1.43 6.68 86.50 0.58 2.00 16 7 C 0.04 0.62 4.79 86.54 0.41 1.04 16 8 N -0.54 -9.67 4.77 -898.96 -4.29 -13.96 16 9 C 0.12 2.23 5.42 85.55 0.46 2.70 16 10 C -0.16 -4.18 4.13 -19.83 -0.08 -4.26 16 11 C -0.05 -1.40 9.69 22.25 0.22 -1.18 16 12 C -0.21 -8.27 9.99 22.39 0.22 -8.04 16 13 C 0.12 5.43 6.65 22.58 0.15 5.58 16 14 O -0.23 -13.61 9.76 -22.78 -0.22 -13.83 16 15 C -0.41 -22.94 9.49 67.92 0.64 -22.29 16 16 H 0.10 5.20 5.20 -2.91 -0.02 5.18 16 17 C -0.02 -1.30 5.49 84.83 0.47 -0.83 16 18 N -0.92 -55.49 13.67 21.61 0.30 -55.20 16 19 Si 1.02 41.18 29.55 68.60 2.03 43.21 16 20 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 21 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 22 H -0.25 -9.20 7.11 99.48 0.71 -8.50 16 23 C -0.24 -9.44 9.17 22.39 0.21 -9.23 16 24 C -0.06 -1.66 7.75 22.25 0.17 -1.49 16 25 C 0.05 0.71 5.58 86.37 0.48 1.19 16 26 C 0.14 2.20 6.73 86.34 0.58 2.78 16 27 H 0.14 0.54 8.00 -2.39 -0.02 0.52 16 28 H 0.14 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.15 0.24 7.67 -2.40 -0.02 0.22 16 30 H 0.39 5.41 8.92 -104.94 -0.94 4.48 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.11 0.72 5.70 -2.39 -0.01 0.71 16 33 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.08 1.79 5.54 -2.38 -0.01 1.78 16 35 H 0.05 0.83 8.02 -2.39 -0.02 0.81 16 36 H 0.09 1.57 8.08 -2.39 -0.02 1.55 16 37 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 38 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 39 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 40 H 0.12 4.74 5.64 -2.91 -0.02 4.73 16 41 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 42 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.10 1.19 8.11 -2.39 -0.02 1.18 16 44 H 0.08 1.36 7.93 -2.39 -0.02 1.34 16 45 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -81.05 372.84 -0.76 -81.81 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 0.07 Total: 23.79 kcal Atomic # 6 Polarization: -40.72 SS G_CDS: 5.56 Total: -35.15 kcal Atomic # 7 Polarization: -103.72 SS G_CDS: -5.20 Total: -108.92 kcal Atomic # 8 Polarization: -40.51 SS G_CDS: -2.92 Total: -43.43 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Atomic # 16 Polarization: 39.00 SS G_CDS: -0.30 Total: 38.70 kcal Total: -81.05 -0.76 -81.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879943428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.171 kcal (2) G-P(sol) polarization free energy of solvation -81.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds