Wall clock time and date at job start Sat Apr 11 2020 05:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86804 * 119.99762 * 2 1 4 4 H 1.48500 * 109.47015 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47410 * 299.99962 * 3 2 1 6 6 H 1.48501 * 109.47166 * 60.00376 * 3 2 1 7 7 C 1.40024 * 120.00458 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00521 * 180.02562 * 7 2 1 9 9 C 1.41337 * 119.99864 * 359.97438 * 7 2 1 10 10 C 1.40617 * 119.78790 * 180.02562 * 9 7 2 11 11 C 1.38313 * 119.13339 * 179.97438 * 10 9 7 12 12 C 1.38688 * 118.66938 * 0.02562 * 11 10 9 13 13 C 1.39655 * 119.49684 * 359.97438 * 12 11 10 14 14 N 1.39169 * 119.57683 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00082 * 185.30991 * 14 13 12 16 16 O 1.21518 * 120.00040 * 354.85724 * 15 14 13 17 17 C 1.48079 * 120.00216 * 174.84700 * 15 14 13 18 18 C 1.39271 * 120.05361 * 179.97438 * 17 15 14 19 19 N 1.32185 * 120.06767 * 180.02562 * 18 17 15 20 20 C 1.31934 * 120.16532 * 0.02562 * 19 18 17 21 21 C 1.39665 * 120.09997 * 0.02562 * 20 19 18 22 22 N 1.38972 * 120.03454 * 179.97438 * 21 20 19 23 23 C 1.48538 * 110.99782 * 62.60972 * 22 21 20 24 24 C 1.54929 * 103.22835 * 159.72238 * 23 22 21 25 25 C 1.54599 * 102.92042 * 322.58194 * 24 23 22 26 26 C 1.47895 * 111.00174 * 180.02562 * 22 21 20 27 27 N 1.32338 * 119.93595 * 359.97438 * 21 20 19 28 28 N 1.31950 * 120.84713 * 0.27537 * 13 12 11 29 29 H 0.97005 * 120.00296 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.43303 * 0.02562 * 10 9 7 31 31 H 1.07999 * 120.66236 * 179.97438 * 11 10 9 32 32 H 1.08007 * 120.25460 * 180.02562 * 12 11 10 33 33 H 0.97001 * 120.00503 * 5.31882 * 14 13 12 34 34 H 1.08007 * 119.96614 * 0.04647 * 18 17 15 35 35 H 1.08001 * 119.95193 * 179.97438 * 20 19 18 36 36 H 1.09001 * 110.66376 * 278.15849 * 23 22 21 37 37 H 1.09000 * 110.66813 * 41.28297 * 23 22 21 38 38 H 1.09007 * 110.72422 * 204.22491 * 24 23 22 39 39 H 1.09002 * 110.72964 * 80.94563 * 24 23 22 40 40 H 1.08998 * 110.30990 * 263.04271 * 25 24 23 41 41 H 1.09007 * 110.30690 * 140.87631 * 25 24 23 42 42 H 1.09001 * 109.91881 * 333.51208 * 26 22 21 43 43 H 1.08997 * 109.91777 * 94.80833 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7013 1.3465 -0.0006 5 1 1.8826 2.3965 -1.2125 6 1 1.8826 2.3965 1.2125 7 6 2.0076 -1.2126 -0.0005 8 1 3.0875 -1.2126 -0.0001 9 6 1.3010 -2.4366 -0.0005 10 6 2.0086 -3.6518 -0.0005 11 6 1.3035 -4.8417 0.0000 12 6 -0.0826 -4.7937 0.0000 13 6 -0.7277 -3.5551 0.0000 14 7 -2.1185 -3.5050 0.0005 15 6 -2.7502 -2.3194 -0.1075 16 8 -2.1088 -1.2873 -0.1113 17 6 -4.2259 -2.2743 -0.2219 18 6 -4.8798 -1.0497 -0.3331 19 7 -6.1971 -1.0091 -0.4347 20 6 -6.8971 -2.1275 -0.4307 21 6 -6.2486 -3.3593 -0.3185 22 7 -6.9873 -4.5364 -0.3139 23 6 -7.7158 -4.7126 -1.5963 24 6 -8.0193 -6.2316 -1.6259 25 6 -6.7450 -6.8508 -1.0069 26 6 -6.1042 -5.7159 -0.1861 27 7 -4.9299 -3.4046 -0.2165 28 7 -0.0356 -2.4317 -0.0055 29 1 -0.4851 0.8401 0.0004 30 1 3.0886 -3.6559 -0.0001 31 1 1.8219 -5.7891 -0.0004 32 1 -0.6587 -5.7073 0.0008 33 1 -2.6334 -4.3234 0.0787 34 1 -4.3099 -0.1322 -0.3366 35 1 -7.9733 -2.0903 -0.5135 36 1 -8.6405 -4.1355 -1.5958 37 1 -7.0851 -4.4298 -2.4391 38 1 -8.1577 -6.5775 -2.6503 39 1 -8.8944 -6.4622 -1.0184 40 1 -6.0649 -7.1807 -1.7921 41 1 -7.0074 -7.6857 -0.3571 42 1 -5.1154 -5.4842 -0.5819 43 1 -6.0283 -6.0113 0.8604 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882468555.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:02 Heat of formation + Delta-G solvation = 95.675752 kcal Electronic energy + Delta-G solvation = -28747.022723 eV Core-core repulsion = 24793.863420 eV Total energy + Delta-G solvation = -3953.159303 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.50191 -39.43214 -38.74526 -37.40694 -34.60844 -34.10883 -33.09491 -32.85876 -30.35584 -29.57171 -29.40489 -28.98325 -25.85108 -25.20700 -24.29550 -22.44180 -21.61283 -21.16078 -21.05178 -19.76433 -18.24129 -17.75578 -17.38467 -16.73523 -16.21434 -16.18706 -15.83470 -15.29171 -14.67178 -14.47099 -14.33969 -13.96328 -13.83808 -13.57730 -13.43046 -13.16778 -12.91579 -12.74912 -12.52191 -12.12876 -11.98361 -11.94950 -11.66951 -11.38602 -11.28046 -11.17791 -10.96479 -10.85166 -10.66382 -10.51230 -10.06006 -9.97427 -9.73811 -9.71072 -9.06710 -9.05096 -8.49691 -8.00874 -7.30945 -7.01954 -6.18606 -4.42950 0.46997 0.97262 2.70359 2.99402 3.15155 3.17066 3.20300 3.24147 3.38138 3.52769 4.00154 4.04552 4.05363 4.20709 4.27548 4.40878 4.47873 4.66731 4.89924 4.95717 5.07638 5.12237 5.18700 5.28847 5.35086 5.46116 5.50312 5.63716 5.78448 5.82165 5.99649 6.06673 6.10403 6.19087 6.45728 6.60764 6.70348 6.79578 6.81445 7.12979 7.20516 7.48850 7.56192 7.64512 7.77900 8.00696 8.14092 8.40935 8.67245 8.99161 9.07791 10.18425 10.44557 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015171 B = 0.003230 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.225510 B = 8667.178670 C =10370.963413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.660 5.660 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.423 4.423 8 H 0.084 0.916 9 C 0.271 3.729 10 C -0.302 4.302 11 C -0.036 4.036 12 C -0.352 4.352 13 C 0.370 3.630 14 N -0.645 5.645 15 C 0.529 3.471 16 O -0.389 6.389 17 C 0.076 3.924 18 C 0.075 3.925 19 N -0.422 5.422 20 C 0.059 3.941 21 C 0.250 3.750 22 N -0.455 5.455 23 C 0.040 3.960 24 C -0.122 4.122 25 C -0.133 4.133 26 C 0.032 3.968 27 N -0.455 5.455 28 N -0.475 5.475 29 H 0.272 0.728 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.407 0.593 34 H 0.185 0.815 35 H 0.171 0.829 36 H 0.093 0.907 37 H 0.056 0.944 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.756 -8.395 -2.740 18.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.279 5.279 2 C -0.170 4.170 3 Si 0.722 3.278 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.454 4.454 8 H 0.102 0.898 9 C 0.146 3.854 10 C -0.325 4.325 11 C -0.060 4.060 12 C -0.378 4.378 13 C 0.132 3.868 14 N -0.292 5.292 15 C 0.308 3.692 16 O -0.251 6.251 17 C -0.067 4.067 18 C -0.084 4.084 19 N -0.135 5.135 20 C -0.107 4.107 21 C 0.013 3.987 22 N -0.174 5.174 23 C -0.086 4.086 24 C -0.161 4.161 25 C -0.171 4.171 26 C -0.095 4.095 27 N -0.179 5.179 28 N -0.194 5.194 29 H 0.084 0.916 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.243 0.757 34 H 0.202 0.798 35 H 0.188 0.812 36 H 0.111 0.889 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.249 -6.553 -2.332 18.599 hybrid contribution 0.927 -0.751 -0.386 1.254 sum -16.322 -7.304 -2.718 18.087 Atomic orbital electron populations 1.70301 1.05897 1.27397 1.24270 1.26170 0.95127 1.00669 0.95070 0.86436 0.80886 0.82089 0.78418 1.18613 1.20019 1.20014 1.19625 0.94135 0.89314 1.42297 0.89837 1.18384 0.87039 0.92041 0.87968 1.21642 0.98622 0.93491 1.18767 1.20566 0.93103 0.96595 0.95756 1.20480 0.94800 0.94887 1.27644 1.18567 0.82889 0.91130 0.94261 1.43117 1.05146 1.09143 1.71784 1.17963 0.84249 0.85782 0.81187 1.91274 1.62898 1.30910 1.39981 1.22685 0.96545 0.89862 0.97573 1.23705 0.90287 0.99225 0.95189 1.68519 1.07326 1.29402 1.08234 1.23477 1.01503 0.87058 0.98652 1.20988 0.88817 0.93023 0.95894 1.62048 1.23261 1.00290 1.31803 1.23387 0.98623 0.98032 0.88532 1.22507 0.98584 0.93385 1.01584 1.22461 0.96912 0.98115 0.99628 1.22949 0.96664 0.87895 1.01988 1.68292 1.06433 1.30678 1.12457 1.68671 1.07218 1.23183 1.20341 0.91602 0.88453 0.88507 0.88989 0.75746 0.79822 0.81203 0.88913 0.92521 0.90372 0.90262 0.90964 0.90567 0.89914 0.89627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -17.90 8.98 55.55 0.50 -17.40 16 2 C 0.06 1.52 5.50 -17.35 -0.10 1.42 16 3 Si 0.90 19.04 29.56 -169.99 -5.02 14.01 16 4 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 7 C -0.42 -11.50 9.14 -37.73 -0.34 -11.85 16 8 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 9 C 0.27 7.54 6.55 -85.00 -0.56 6.99 16 10 C -0.30 -7.54 9.83 -38.66 -0.38 -7.92 16 11 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 12 C -0.35 -7.93 9.95 -38.89 -0.39 -8.32 16 13 C 0.37 9.07 7.43 -155.04 -1.15 7.92 16 14 N -0.65 -13.31 5.37 -12.20 -0.07 -13.37 16 15 C 0.53 11.04 7.77 -12.22 -0.09 10.94 16 16 O -0.39 -9.56 12.09 5.35 0.06 -9.50 16 17 C 0.08 1.28 6.75 -82.87 -0.56 0.72 16 18 C 0.07 1.17 10.76 -17.02 -0.18 0.99 16 19 N -0.42 -5.98 10.48 -12.53 -0.13 -6.11 16 20 C 0.06 0.70 10.62 -16.98 -0.18 0.52 16 21 C 0.25 3.16 6.21 -154.90 -0.96 2.19 16 22 N -0.45 -4.67 5.30 -169.08 -0.90 -5.56 16 23 C 0.04 0.31 6.07 -1.90 -0.01 0.29 16 24 C -0.12 -0.75 7.06 -24.87 -0.18 -0.93 16 25 C -0.13 -0.96 6.93 -25.36 -0.18 -1.14 16 26 C 0.03 0.32 6.36 -2.74 -0.02 0.30 16 27 N -0.46 -6.76 7.54 -8.82 -0.07 -6.82 16 28 N -0.47 -13.24 5.73 -10.27 -0.06 -13.30 16 29 H 0.27 6.86 8.29 -40.82 -0.34 6.52 16 30 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 31 H 0.10 1.85 8.06 -52.49 -0.42 1.42 16 32 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 33 H 0.41 7.08 8.05 -40.82 -0.33 6.76 16 34 H 0.18 2.85 7.64 -52.48 -0.40 2.45 16 35 H 0.17 1.47 8.05 -52.49 -0.42 1.05 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.48 8.00 -51.93 -0.42 0.07 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.48 8.14 -51.92 -0.42 0.05 16 42 H 0.08 0.96 6.51 -51.93 -0.34 0.62 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 360.86 15.07 5.44 5.44 Total: -1.00 -31.87 360.86 -11.17 -43.04 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -5.26 Total: 8.66 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -5.67 Total: 0.92 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: -0.72 Total: -62.57 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.06 Total: -9.50 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.01 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.87 -11.17 -43.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882468555.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.717 kcal (2) G-P(sol) polarization free energy of solvation -31.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds