Wall clock time and date at job start Sat Apr 11 2020 05:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86804 * 119.99762 * 2 1 4 4 H 1.48500 * 109.47015 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47410 * 299.99962 * 3 2 1 6 6 H 1.48501 * 109.47166 * 60.00376 * 3 2 1 7 7 C 1.40024 * 120.00458 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00521 * 180.02562 * 7 2 1 9 9 C 1.41337 * 119.99864 * 359.97438 * 7 2 1 10 10 C 1.40617 * 119.78790 * 180.02562 * 9 7 2 11 11 C 1.38313 * 119.13339 * 179.97438 * 10 9 7 12 12 C 1.38688 * 118.66938 * 0.02562 * 11 10 9 13 13 C 1.39655 * 119.49684 * 359.97438 * 12 11 10 14 14 N 1.39169 * 119.57683 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00082 * 185.30991 * 14 13 12 16 16 O 1.21518 * 120.00040 * 354.85724 * 15 14 13 17 17 C 1.48079 * 120.00216 * 174.84700 * 15 14 13 18 18 C 1.39271 * 120.05361 * 179.97438 * 17 15 14 19 19 N 1.32185 * 120.06767 * 180.02562 * 18 17 15 20 20 C 1.31934 * 120.16532 * 0.02562 * 19 18 17 21 21 C 1.39665 * 120.09997 * 0.02562 * 20 19 18 22 22 N 1.38972 * 120.03454 * 179.97438 * 21 20 19 23 23 C 1.48538 * 110.99782 * 62.60972 * 22 21 20 24 24 C 1.54929 * 103.22835 * 159.72238 * 23 22 21 25 25 C 1.54599 * 102.92042 * 322.58194 * 24 23 22 26 26 C 1.47895 * 111.00174 * 180.02562 * 22 21 20 27 27 N 1.32338 * 119.93595 * 359.97438 * 21 20 19 28 28 N 1.31950 * 120.84713 * 0.27537 * 13 12 11 29 29 H 0.97005 * 120.00296 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.43303 * 0.02562 * 10 9 7 31 31 H 1.07999 * 120.66236 * 179.97438 * 11 10 9 32 32 H 1.08007 * 120.25460 * 180.02562 * 12 11 10 33 33 H 0.97001 * 120.00503 * 5.31882 * 14 13 12 34 34 H 1.08007 * 119.96614 * 0.04647 * 18 17 15 35 35 H 1.08001 * 119.95193 * 179.97438 * 20 19 18 36 36 H 1.09001 * 110.66376 * 278.15849 * 23 22 21 37 37 H 1.09000 * 110.66813 * 41.28297 * 23 22 21 38 38 H 1.09007 * 110.72422 * 204.22491 * 24 23 22 39 39 H 1.09002 * 110.72964 * 80.94563 * 24 23 22 40 40 H 1.08998 * 110.30990 * 263.04271 * 25 24 23 41 41 H 1.09007 * 110.30690 * 140.87631 * 25 24 23 42 42 H 1.09001 * 109.91881 * 333.51208 * 26 22 21 43 43 H 1.08997 * 109.91777 * 94.80833 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7013 1.3465 -0.0006 5 1 1.8826 2.3965 -1.2125 6 1 1.8826 2.3965 1.2125 7 6 2.0076 -1.2126 -0.0005 8 1 3.0875 -1.2126 -0.0001 9 6 1.3010 -2.4366 -0.0005 10 6 2.0086 -3.6518 -0.0005 11 6 1.3035 -4.8417 0.0000 12 6 -0.0826 -4.7937 0.0000 13 6 -0.7277 -3.5551 0.0000 14 7 -2.1185 -3.5050 0.0005 15 6 -2.7502 -2.3194 -0.1075 16 8 -2.1088 -1.2873 -0.1113 17 6 -4.2259 -2.2743 -0.2219 18 6 -4.8798 -1.0497 -0.3331 19 7 -6.1971 -1.0091 -0.4347 20 6 -6.8971 -2.1275 -0.4307 21 6 -6.2486 -3.3593 -0.3185 22 7 -6.9873 -4.5364 -0.3139 23 6 -7.7158 -4.7126 -1.5963 24 6 -8.0193 -6.2316 -1.6259 25 6 -6.7450 -6.8508 -1.0069 26 6 -6.1042 -5.7159 -0.1861 27 7 -4.9299 -3.4046 -0.2165 28 7 -0.0356 -2.4317 -0.0055 29 1 -0.4851 0.8401 0.0004 30 1 3.0886 -3.6559 -0.0001 31 1 1.8219 -5.7891 -0.0004 32 1 -0.6587 -5.7073 0.0008 33 1 -2.6334 -4.3234 0.0787 34 1 -4.3099 -0.1322 -0.3366 35 1 -7.9733 -2.0903 -0.5135 36 1 -8.6405 -4.1355 -1.5958 37 1 -7.0851 -4.4298 -2.4391 38 1 -8.1577 -6.5775 -2.6503 39 1 -8.8944 -6.4622 -1.0184 40 1 -6.0649 -7.1807 -1.7921 41 1 -7.0074 -7.6857 -0.3571 42 1 -5.1154 -5.4842 -0.5819 43 1 -6.0283 -6.0113 0.8604 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882468555.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:01 Heat of formation + Delta-G solvation = 75.435316 kcal Electronic energy + Delta-G solvation = -28747.900414 eV Core-core repulsion = 24793.863420 eV Total energy + Delta-G solvation = -3954.036994 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.60721 -40.97534 -39.81464 -39.10250 -36.11403 -35.54207 -34.83634 -33.87791 -32.25789 -31.03972 -30.39447 -30.02639 -27.63863 -26.57525 -25.35691 -23.93614 -23.19008 -22.39768 -21.76738 -21.30224 -19.87160 -18.98901 -18.73394 -17.89174 -17.76602 -17.28139 -16.91097 -16.47575 -16.38159 -16.29108 -15.63846 -15.56669 -15.21825 -14.92155 -14.66828 -14.28023 -14.13711 -13.95913 -13.76116 -13.59047 -13.27743 -12.92001 -12.91784 -12.74394 -12.55952 -12.36975 -12.34456 -12.20902 -12.08334 -11.76613 -11.59877 -11.43938 -11.25101 -11.04113 -10.90875 -10.34493 -9.93560 -9.47710 -9.18929 -8.89038 -8.07917 -6.43364 -0.71205 -0.13373 0.88524 1.22048 1.41267 1.51431 1.55718 1.89514 1.97346 2.26693 2.29368 2.65767 2.93122 2.99276 3.13327 3.34167 3.60733 3.73734 3.92840 4.01637 4.02641 4.12296 4.28775 4.31335 4.36239 4.52596 4.69856 4.70288 4.82935 4.86842 4.91934 4.93919 4.99455 5.01066 5.07440 5.16228 5.20890 5.26426 5.48576 5.64922 5.75587 5.77256 5.89805 6.05557 6.12135 6.30534 6.48298 6.65181 6.78787 7.04288 7.39971 8.27959 8.55379 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015171 B = 0.003230 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.225510 B = 8667.178670 C =10370.963413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.694 5.694 2 C 0.012 3.988 3 Si 0.977 3.023 4 H -0.255 1.255 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.461 4.461 8 H 0.088 0.912 9 C 0.236 3.764 10 C -0.324 4.324 11 C -0.032 4.032 12 C -0.344 4.344 13 C 0.348 3.652 14 N -0.637 5.637 15 C 0.526 3.474 16 O -0.434 6.434 17 C 0.058 3.942 18 C 0.068 3.932 19 N -0.429 5.429 20 C 0.080 3.920 21 C 0.253 3.747 22 N -0.452 5.452 23 C 0.035 3.965 24 C -0.115 4.115 25 C -0.130 4.130 26 C 0.027 3.973 27 N -0.462 5.462 28 N -0.508 5.508 29 H 0.272 0.728 30 H 0.108 0.892 31 H 0.139 0.861 32 H 0.128 0.872 33 H 0.421 0.579 34 H 0.175 0.825 35 H 0.213 0.787 36 H 0.117 0.883 37 H 0.048 0.952 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.151 -10.088 -3.171 21.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.313 5.313 2 C -0.214 4.214 3 Si 0.798 3.202 4 H -0.178 1.178 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.492 4.492 8 H 0.106 0.894 9 C 0.111 3.889 10 C -0.347 4.347 11 C -0.057 4.057 12 C -0.369 4.369 13 C 0.110 3.890 14 N -0.285 5.285 15 C 0.307 3.693 16 O -0.298 6.298 17 C -0.082 4.082 18 C -0.089 4.089 19 N -0.142 5.142 20 C -0.088 4.088 21 C 0.014 3.986 22 N -0.171 5.171 23 C -0.090 4.090 24 C -0.153 4.153 25 C -0.168 4.168 26 C -0.100 4.100 27 N -0.185 5.185 28 N -0.228 5.228 29 H 0.083 0.917 30 H 0.126 0.874 31 H 0.157 0.843 32 H 0.146 0.854 33 H 0.259 0.741 34 H 0.192 0.808 35 H 0.230 0.770 36 H 0.136 0.864 37 H 0.066 0.934 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.081 0.919 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -19.644 -8.289 -2.765 21.500 hybrid contribution 1.429 -0.492 -0.250 1.532 sum -18.215 -8.781 -3.015 20.445 Atomic orbital electron populations 1.70483 1.07409 1.28166 1.25254 1.27032 0.96013 1.04051 0.94271 0.85242 0.79549 0.77015 0.78402 1.17787 1.19558 1.19573 1.19940 0.94524 0.90328 1.44394 0.89435 1.18890 0.87736 0.93547 0.88753 1.21839 0.99357 0.93703 1.19782 1.21032 0.93276 0.97509 0.93840 1.20932 0.95318 0.95471 1.25212 1.19055 0.84376 0.91433 0.94179 1.43087 1.03981 1.10017 1.71431 1.18489 0.85929 0.85088 0.79747 1.91257 1.64561 1.32163 1.41864 1.21953 0.94347 0.91032 1.00877 1.23541 0.91073 0.98511 0.95746 1.68594 1.06324 1.30417 1.08820 1.24185 1.03126 0.86011 0.95437 1.21386 0.88066 0.94498 0.94629 1.62145 1.22482 0.99403 1.33057 1.23600 0.98957 0.99751 0.86684 1.22533 0.98197 0.91876 1.02714 1.22458 0.97370 0.97442 0.99516 1.22991 0.96043 0.88760 1.02217 1.68225 1.07675 1.29709 1.12939 1.68633 1.07608 1.25136 1.21443 0.91686 0.87418 0.84304 0.85366 0.74101 0.80788 0.77043 0.86445 0.93352 0.88758 0.89092 0.90924 0.89358 0.91911 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -39.77 8.98 21.84 0.20 -39.57 16 2 C 0.01 0.63 5.50 85.29 0.47 1.10 16 3 Si 0.98 40.66 29.56 68.60 2.03 42.69 16 4 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.46 -26.23 9.14 23.47 0.21 -26.01 16 8 H 0.09 4.66 7.85 -2.91 -0.02 4.64 16 9 C 0.24 13.72 6.55 40.21 0.26 13.98 16 10 C -0.32 -16.41 9.83 22.87 0.22 -16.19 16 11 C -0.03 -1.43 10.15 22.40 0.23 -1.20 16 12 C -0.34 -15.15 9.95 22.72 0.23 -14.92 16 13 C 0.35 17.45 7.43 133.27 0.99 18.44 16 14 N -0.64 -27.06 5.37 -310.80 -1.67 -28.73 16 15 C 0.53 23.11 7.77 86.86 0.67 23.78 16 16 O -0.43 -22.81 12.09 -3.77 -0.05 -22.85 16 17 C 0.06 2.02 6.75 41.80 0.28 2.30 16 18 C 0.07 2.22 10.76 84.89 0.91 3.13 16 19 N -0.43 -11.72 10.48 -193.57 -2.03 -13.75 16 20 C 0.08 1.71 10.62 85.02 0.90 2.61 16 21 C 0.25 5.94 6.21 133.22 0.83 6.76 16 22 N -0.45 -8.07 5.30 -688.85 -3.65 -11.72 16 23 C 0.03 0.41 6.07 86.65 0.53 0.94 16 24 C -0.12 -0.98 7.06 31.80 0.22 -0.76 16 25 C -0.13 -1.52 6.93 31.48 0.22 -1.30 16 26 C 0.03 0.48 6.36 86.46 0.55 1.03 16 27 N -0.46 -13.59 7.54 -181.82 -1.37 -14.96 16 28 N -0.51 -29.63 5.73 -186.41 -1.07 -30.70 16 29 H 0.27 14.56 8.29 -92.70 -0.77 13.80 16 30 H 0.11 5.05 8.06 -2.91 -0.02 5.02 16 31 H 0.14 4.85 8.06 -2.91 -0.02 4.82 16 32 H 0.13 4.63 8.06 -2.91 -0.02 4.60 16 33 H 0.42 14.80 8.05 -92.71 -0.75 14.06 16 34 H 0.18 5.85 7.64 -2.91 -0.02 5.83 16 35 H 0.21 2.67 8.05 -2.91 -0.02 2.64 16 36 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.05 0.68 8.00 -2.39 -0.02 0.66 16 38 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 39 H 0.09 0.61 8.14 -2.39 -0.02 0.60 16 40 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.06 1.40 6.51 -2.39 -0.02 1.39 16 43 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -73.65 360.86 0.44 -73.21 By element: Atomic # 1 Polarization: 32.38 SS G_CDS: 0.32 Total: 32.69 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 7.73 Total: 13.70 kcal Atomic # 7 Polarization: -129.85 SS G_CDS: -9.59 Total: -139.44 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.05 Total: -22.85 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Total: -73.65 0.44 -73.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882468555.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.649 kcal (2) G-P(sol) polarization free energy of solvation -73.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds