Wall clock time and date at job start Sat Apr 11 2020 05:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99861 * 2 1 4 4 H 1.48503 * 109.46831 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47079 * 299.99743 * 3 2 1 6 6 H 1.48498 * 109.46904 * 60.00361 * 3 2 1 7 7 C 1.37876 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00008 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00051 * 359.97438 * 7 2 1 10 10 O 1.42891 * 109.47105 * 180.02562 * 9 7 2 11 11 C 1.42905 * 114.00134 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47132 * 179.97438 * 11 10 9 13 13 O 1.45200 * 109.46843 * 65.00221 * 12 11 10 14 14 C 1.34896 * 116.99413 * 179.97438 * 13 12 11 15 15 O 1.21622 * 120.00365 * 0.02562 * 14 13 12 16 16 C 1.46470 * 119.99845 * 179.97438 * 14 13 12 17 17 C 1.36644 * 125.99918 * 180.02562 * 16 14 13 18 18 C 1.40309 * 106.70356 * 180.02562 * 17 16 14 19 19 C 1.35164 * 107.12857 * 359.97438 * 18 17 16 20 20 C 1.50703 * 125.61255 * 180.02562 * 19 18 17 21 21 N 1.46905 * 109.47042 * 89.99749 * 20 19 18 22 22 C 1.47017 * 111.00211 * 293.64000 * 21 20 19 23 23 C 1.53092 * 109.25876 * 177.60506 * 22 21 20 24 24 O 1.43012 * 109.25686 * 56.84795 * 23 22 21 25 25 C 1.43018 * 113.74058 * 301.32911 * 24 23 22 26 26 C 1.47007 * 111.00183 * 170.00077 * 21 20 19 27 27 O 1.33914 * 108.78284 * 359.97438 * 19 18 17 28 28 H 0.97000 * 119.99863 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46502 * 60.00362 * 9 7 2 30 30 H 1.08997 * 109.46928 * 300.00690 * 9 7 2 31 31 H 1.09005 * 109.46896 * 59.99645 * 11 10 9 32 32 H 1.08997 * 109.46536 * 300.00053 * 11 10 9 33 33 H 1.08997 * 109.47095 * 305.00187 * 12 11 10 34 34 H 1.09002 * 109.46620 * 184.99888 * 12 11 10 35 35 H 1.08003 * 126.64409 * 359.97438 * 17 16 14 36 36 H 1.08005 * 126.43383 * 179.97438 * 18 17 16 37 37 H 1.08993 * 109.47058 * 209.99775 * 20 19 18 38 38 H 1.08997 * 109.46939 * 330.00366 * 20 19 18 39 39 H 1.08998 * 109.50601 * 297.54416 * 22 21 20 40 40 H 1.09006 * 109.50648 * 57.66906 * 22 21 20 41 41 H 1.09001 * 109.50995 * 296.91480 * 23 22 21 42 42 H 1.08994 * 109.54327 * 176.80295 * 23 22 21 43 43 H 1.08997 * 109.50371 * 298.73599 * 25 24 23 44 44 H 1.09000 * 109.54303 * 178.62778 * 25 24 23 45 45 H 1.09001 * 109.51154 * 302.33403 * 26 21 20 46 46 H 1.09008 * 109.50409 * 62.45867 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6480 -5.9562 -0.0017 13 8 3.3993 -5.8891 1.2390 14 6 4.3983 -6.7814 1.3989 15 8 4.6348 -7.5928 0.5243 16 6 5.1991 -6.7723 2.6253 17 6 6.2349 -7.6152 2.9145 18 6 6.7082 -7.2517 4.1843 19 6 5.9513 -6.2158 4.6097 20 6 6.1041 -5.5002 5.9272 21 7 7.0406 -4.3793 5.7698 22 6 8.3986 -4.8636 5.4827 23 6 9.3271 -3.6655 5.2674 24 8 9.2855 -2.8232 6.4224 25 6 7.9778 -2.3329 6.7308 26 6 7.0358 -3.5175 6.9608 27 8 5.0439 -5.9293 3.6675 28 1 -0.4850 0.8401 -0.0004 29 1 0.6241 -2.5567 -0.8904 30 1 0.6246 -2.5570 0.8896 31 1 0.9451 -4.9822 -0.8914 32 1 0.9446 -4.9826 0.8886 33 1 3.3215 -5.7952 -0.8434 34 1 2.1820 -6.9374 -0.0917 35 1 6.6150 -8.4082 2.2874 36 1 7.5241 -7.7130 4.7210 37 1 5.1344 -5.1210 6.2493 38 1 6.4897 -6.1935 6.6746 39 1 8.7588 -5.4568 6.3232 40 1 8.3831 -5.4784 4.5827 41 1 8.9980 -3.1023 4.3942 42 1 10.3465 -4.0178 5.1104 43 1 7.6096 -1.7310 5.9001 44 1 8.0208 -1.7217 7.6322 45 1 6.0255 -3.1497 7.1399 46 1 7.3741 -4.0892 7.8250 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884963538.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:15 Heat of formation + Delta-G solvation = -147.981155 kcal Electronic energy + Delta-G solvation = -29018.419717 eV Core-core repulsion = 24682.800236 eV Total energy + Delta-G solvation = -4335.619481 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.97867 -40.15666 -39.82820 -37.10860 -36.37843 -36.08552 -33.37596 -32.76260 -31.71446 -31.34804 -30.17475 -28.35320 -26.92472 -25.40246 -24.45189 -23.28024 -22.38018 -21.92780 -21.68617 -20.80594 -20.51423 -18.50546 -17.29042 -17.07471 -16.73677 -16.57304 -16.35714 -16.06039 -15.83455 -15.51396 -15.28024 -15.20004 -14.69930 -14.61632 -14.35341 -14.15648 -13.92168 -13.40646 -13.22916 -13.21454 -12.94895 -12.81583 -12.66424 -12.27734 -11.98179 -11.77915 -11.55877 -11.44430 -11.02415 -10.93699 -10.89304 -10.80366 -10.65168 -10.43162 -10.29690 -10.05505 -10.04268 -9.10246 -9.03596 -8.87302 -8.76344 -8.20492 -6.10893 -4.12174 0.67509 1.91054 2.19953 2.81097 2.86230 3.30052 3.36368 3.36938 3.43664 3.55919 4.18814 4.33650 4.47464 4.52548 4.56932 4.61259 4.69203 4.75031 4.80677 4.85378 4.94284 5.05668 5.17154 5.18199 5.25919 5.29362 5.30668 5.42638 5.43674 5.45911 5.46982 5.53278 5.61709 5.84795 5.90739 6.01264 6.05097 6.37401 6.39765 6.42907 6.68353 6.79856 7.06048 7.40843 7.67436 7.80025 8.13629 8.53344 9.00890 9.52608 11.00790 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.007312 B = 0.003094 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3828.588898 B = 9049.037445 C =12195.597655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.513 4.513 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.390 6.390 11 C 0.061 3.939 12 C 0.074 3.926 13 O -0.328 6.328 14 C 0.550 3.450 15 O -0.495 6.495 16 C -0.051 4.051 17 C -0.110 4.110 18 C -0.220 4.220 19 C 0.041 3.959 20 C 0.128 3.872 21 N -0.534 5.534 22 C 0.012 3.988 23 C 0.063 3.937 24 O -0.387 6.387 25 C 0.062 3.938 26 C 0.020 3.980 27 O -0.132 6.132 28 H 0.263 0.737 29 H 0.006 0.994 30 H 0.007 0.993 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.164 0.836 36 H 0.157 0.843 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.046 0.954 40 H 0.092 0.908 41 H 0.063 0.937 42 H 0.099 0.901 43 H 0.065 0.935 44 H 0.101 0.899 45 H 0.093 0.907 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.150 -14.914 14.629 25.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.086 0.914 9 C 0.120 3.880 10 O -0.310 6.310 11 C -0.016 4.016 12 C 0.001 3.999 13 O -0.243 6.243 14 C 0.395 3.605 15 O -0.386 6.386 16 C -0.102 4.102 17 C -0.130 4.130 18 C -0.240 4.240 19 C -0.014 4.014 20 C 0.001 3.999 21 N -0.260 5.260 22 C -0.116 4.116 23 C -0.014 4.014 24 O -0.305 6.305 25 C -0.015 4.015 26 C -0.108 4.108 27 O -0.026 6.026 28 H 0.073 0.927 29 H 0.024 0.976 30 H 0.025 0.975 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.182 0.818 36 H 0.175 0.825 37 H 0.121 0.879 38 H 0.093 0.907 39 H 0.064 0.936 40 H 0.110 0.890 41 H 0.082 0.918 42 H 0.117 0.883 43 H 0.083 0.917 44 H 0.119 0.881 45 H 0.111 0.889 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 14.993 -14.393 14.062 25.094 hybrid contribution 0.021 0.053 0.294 0.300 sum 15.014 -14.340 14.356 25.242 Atomic orbital electron populations 1.69970 1.06102 1.27063 1.50725 1.24941 0.94975 0.99433 0.95123 0.86284 0.80096 0.82544 0.77621 1.19432 1.20831 1.20797 1.21097 0.94169 0.89279 1.50614 0.91442 1.20243 0.88740 0.83508 0.95498 1.87929 1.35295 1.12577 1.95223 1.22328 0.93139 0.85477 1.00697 1.23340 0.93693 0.99140 0.83749 1.86780 1.42746 1.52904 1.41876 1.19199 0.78606 0.78791 0.83897 1.90922 1.68388 1.38456 1.40823 1.20840 1.02460 0.97440 0.89507 1.21913 0.94674 0.99742 0.96665 1.21566 1.04367 1.00851 0.97243 1.22590 0.90504 0.96552 0.91719 1.20576 0.98886 0.91953 0.88515 1.62082 1.07217 1.18819 1.37878 1.22940 0.88382 0.98129 1.02149 1.22673 0.99565 0.90455 0.88737 1.87979 1.28833 1.66651 1.47035 1.22697 0.82325 0.94613 1.01889 1.22822 1.01904 0.95345 0.90684 1.84194 1.47346 1.47965 1.23066 0.92706 0.97573 0.97492 0.91686 0.93097 0.90091 0.90044 0.81800 0.82499 0.87898 0.90723 0.93611 0.88993 0.91837 0.88271 0.91672 0.88114 0.88898 0.93561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 22.08 29.54 -169.99 -5.02 17.06 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.51 -15.39 9.43 -34.44 -0.32 -15.71 16 8 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 9 C 0.19 5.39 5.69 36.01 0.20 5.60 16 10 O -0.39 -9.69 10.30 -38.80 -0.40 -10.09 16 11 C 0.06 1.14 6.33 37.16 0.24 1.38 16 12 C 0.07 1.20 5.86 37.16 0.22 1.42 16 13 O -0.33 -5.92 10.21 -44.89 -0.46 -6.38 16 14 C 0.55 9.00 7.93 34.05 0.27 9.27 16 15 O -0.50 -8.39 16.66 -19.36 -0.32 -8.72 16 16 C -0.05 -0.74 7.18 -36.84 -0.26 -1.00 16 17 C -0.11 -1.23 10.62 -39.38 -0.42 -1.65 16 18 C -0.22 -2.02 9.30 -39.90 -0.37 -2.39 16 19 C 0.04 0.43 6.23 -35.40 -0.22 0.21 16 20 C 0.13 1.04 5.49 -4.97 -0.03 1.02 16 21 N -0.53 -4.93 4.72 -235.76 -1.11 -6.04 16 22 C 0.01 0.10 5.39 -3.71 -0.02 0.08 16 23 C 0.06 0.54 7.01 37.20 0.26 0.80 16 24 O -0.39 -3.86 10.83 -35.23 -0.38 -4.24 16 25 C 0.06 0.51 7.01 37.20 0.26 0.78 16 26 C 0.02 0.15 5.64 -3.72 -0.02 0.13 16 27 O -0.13 -1.92 10.67 4.72 0.05 -1.87 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.16 1.53 8.06 -52.48 -0.42 1.11 16 36 H 0.16 0.96 8.06 -52.48 -0.42 0.53 16 37 H 0.10 0.80 8.04 -51.93 -0.42 0.38 16 38 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 39 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.09 0.75 6.19 -51.93 -0.32 0.43 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.09 0.64 8.09 -51.93 -0.42 0.22 16 46 H 0.05 0.31 8.14 -51.92 -0.42 -0.11 16 LS Contribution 392.46 15.07 5.91 5.91 Total: -1.00 -35.39 392.46 -8.35 -43.74 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -7.04 Total: -4.54 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -0.32 Total: 1.47 kcal Atomic # 7 Polarization: -31.96 SS G_CDS: -0.38 Total: -32.34 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -1.51 Total: -31.30 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.39 -8.35 -43.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884963538.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.242 kcal (2) G-P(sol) polarization free energy of solvation -35.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds