Wall clock time and date at job start Sat Apr 11 2020 05:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99861 * 2 1 4 4 H 1.48503 * 109.46831 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47079 * 299.99743 * 3 2 1 6 6 H 1.48498 * 109.46904 * 60.00361 * 3 2 1 7 7 C 1.37876 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00008 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00051 * 359.97438 * 7 2 1 10 10 O 1.42891 * 109.47105 * 180.02562 * 9 7 2 11 11 C 1.42905 * 114.00134 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47132 * 179.97438 * 11 10 9 13 13 O 1.45200 * 109.46843 * 65.00221 * 12 11 10 14 14 C 1.34896 * 116.99413 * 179.97438 * 13 12 11 15 15 O 1.21622 * 120.00365 * 0.02562 * 14 13 12 16 16 C 1.46470 * 119.99845 * 179.97438 * 14 13 12 17 17 C 1.36644 * 125.99918 * 180.02562 * 16 14 13 18 18 C 1.40309 * 106.70356 * 180.02562 * 17 16 14 19 19 C 1.35164 * 107.12857 * 359.97438 * 18 17 16 20 20 C 1.50703 * 125.61255 * 180.02562 * 19 18 17 21 21 N 1.46905 * 109.47042 * 89.99749 * 20 19 18 22 22 C 1.47017 * 111.00211 * 293.64000 * 21 20 19 23 23 C 1.53092 * 109.25876 * 177.60506 * 22 21 20 24 24 O 1.43012 * 109.25686 * 56.84795 * 23 22 21 25 25 C 1.43018 * 113.74058 * 301.32911 * 24 23 22 26 26 C 1.47007 * 111.00183 * 170.00077 * 21 20 19 27 27 O 1.33914 * 108.78284 * 359.97438 * 19 18 17 28 28 H 0.97000 * 119.99863 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46502 * 60.00362 * 9 7 2 30 30 H 1.08997 * 109.46928 * 300.00690 * 9 7 2 31 31 H 1.09005 * 109.46896 * 59.99645 * 11 10 9 32 32 H 1.08997 * 109.46536 * 300.00053 * 11 10 9 33 33 H 1.08997 * 109.47095 * 305.00187 * 12 11 10 34 34 H 1.09002 * 109.46620 * 184.99888 * 12 11 10 35 35 H 1.08003 * 126.64409 * 359.97438 * 17 16 14 36 36 H 1.08005 * 126.43383 * 179.97438 * 18 17 16 37 37 H 1.08993 * 109.47058 * 209.99775 * 20 19 18 38 38 H 1.08997 * 109.46939 * 330.00366 * 20 19 18 39 39 H 1.08998 * 109.50601 * 297.54416 * 22 21 20 40 40 H 1.09006 * 109.50648 * 57.66906 * 22 21 20 41 41 H 1.09001 * 109.50995 * 296.91480 * 23 22 21 42 42 H 1.08994 * 109.54327 * 176.80295 * 23 22 21 43 43 H 1.08997 * 109.50371 * 298.73599 * 25 24 23 44 44 H 1.09000 * 109.54303 * 178.62778 * 25 24 23 45 45 H 1.09001 * 109.51154 * 302.33403 * 26 21 20 46 46 H 1.09008 * 109.50409 * 62.45867 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6480 -5.9562 -0.0017 13 8 3.3993 -5.8891 1.2390 14 6 4.3983 -6.7814 1.3989 15 8 4.6348 -7.5928 0.5243 16 6 5.1991 -6.7723 2.6253 17 6 6.2349 -7.6152 2.9145 18 6 6.7082 -7.2517 4.1843 19 6 5.9513 -6.2158 4.6097 20 6 6.1041 -5.5002 5.9272 21 7 7.0406 -4.3793 5.7698 22 6 8.3986 -4.8636 5.4827 23 6 9.3271 -3.6655 5.2674 24 8 9.2855 -2.8232 6.4224 25 6 7.9778 -2.3329 6.7308 26 6 7.0358 -3.5175 6.9608 27 8 5.0439 -5.9293 3.6675 28 1 -0.4850 0.8401 -0.0004 29 1 0.6241 -2.5567 -0.8904 30 1 0.6246 -2.5570 0.8896 31 1 0.9451 -4.9822 -0.8914 32 1 0.9446 -4.9826 0.8886 33 1 3.3215 -5.7952 -0.8434 34 1 2.1820 -6.9374 -0.0917 35 1 6.6150 -8.4082 2.2874 36 1 7.5241 -7.7130 4.7210 37 1 5.1344 -5.1210 6.2493 38 1 6.4897 -6.1935 6.6746 39 1 8.7588 -5.4568 6.3232 40 1 8.3831 -5.4784 4.5827 41 1 8.9980 -3.1023 4.3942 42 1 10.3465 -4.0178 5.1104 43 1 7.6096 -1.7310 5.9001 44 1 8.0208 -1.7217 7.6322 45 1 6.0255 -3.1497 7.1399 46 1 7.3741 -4.0892 7.8250 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884963538.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:14 Heat of formation + Delta-G solvation = -172.975213 kcal Electronic energy + Delta-G solvation = -29019.503540 eV Core-core repulsion = 24682.800236 eV Total energy + Delta-G solvation = -4336.703305 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.89070 -41.40094 -40.49699 -38.80385 -37.58185 -37.06005 -34.97490 -34.25763 -32.52642 -32.09087 -31.59509 -29.36452 -28.86245 -26.27156 -25.09408 -24.63163 -24.23459 -23.16976 -22.66317 -21.57516 -21.36973 -19.61195 -18.74196 -18.23894 -18.18529 -17.82871 -17.37253 -17.22538 -16.82546 -16.62765 -16.37702 -16.22813 -16.10388 -15.93214 -15.52221 -15.24938 -14.85908 -14.61080 -14.36749 -14.18345 -14.05066 -13.88621 -13.74844 -13.43440 -13.26619 -12.94003 -12.90976 -12.74858 -12.53115 -12.38572 -12.18330 -12.16844 -11.92695 -11.83938 -11.58587 -11.29719 -11.14613 -10.92733 -10.74034 -10.30366 -9.85085 -9.43683 -8.34625 -6.46789 -0.34177 1.06382 1.20588 1.38345 1.39778 1.54627 1.72736 1.84521 2.32970 2.73628 2.94869 2.99158 3.02707 3.34693 3.69714 3.78796 3.85961 3.89348 3.93365 4.03077 4.06060 4.19384 4.26028 4.33516 4.34510 4.40567 4.45235 4.46244 4.59617 4.61216 4.69898 4.72019 4.79234 4.79683 4.81975 4.85891 4.99063 5.11305 5.16014 5.27072 5.52080 5.72235 5.79926 5.88735 5.92639 6.14347 6.44061 6.49418 6.76986 7.24868 8.77917 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.007312 B = 0.003094 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3828.588898 B = 9049.037445 C =12195.597655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.010 3.990 3 Si 0.981 3.019 4 H -0.268 1.268 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.552 4.552 8 H 0.057 0.943 9 C 0.208 3.792 10 O -0.412 6.412 11 C 0.052 3.948 12 C 0.077 3.923 13 O -0.354 6.354 14 C 0.549 3.451 15 O -0.510 6.510 16 C -0.098 4.098 17 C -0.089 4.089 18 C -0.207 4.207 19 C 0.040 3.960 20 C 0.128 3.872 21 N -0.561 5.561 22 C 0.016 3.984 23 C 0.058 3.942 24 O -0.401 6.401 25 C 0.057 3.943 26 C 0.024 3.976 27 O -0.166 6.166 28 H 0.272 0.728 29 H -0.005 1.005 30 H -0.012 1.012 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.117 0.883 35 H 0.183 0.817 36 H 0.197 0.803 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.063 0.937 40 H 0.091 0.909 41 H 0.044 0.956 42 H 0.118 0.882 43 H 0.046 0.954 44 H 0.120 0.880 45 H 0.097 0.903 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.791 -15.523 16.069 27.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.189 4.189 3 Si 0.804 3.196 4 H -0.192 1.192 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.589 4.589 8 H 0.075 0.925 9 C 0.134 3.866 10 O -0.332 6.332 11 C -0.024 4.024 12 C 0.004 3.996 13 O -0.270 6.270 14 C 0.396 3.604 15 O -0.402 6.402 16 C -0.148 4.148 17 C -0.108 4.108 18 C -0.226 4.226 19 C -0.014 4.014 20 C 0.001 3.999 21 N -0.287 5.287 22 C -0.112 4.112 23 C -0.018 4.018 24 O -0.320 6.320 25 C -0.019 4.019 26 C -0.104 4.104 27 O -0.061 6.061 28 H 0.081 0.919 29 H 0.013 0.987 30 H 0.006 0.994 31 H 0.107 0.893 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.135 0.865 35 H 0.200 0.800 36 H 0.214 0.786 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.082 0.918 40 H 0.109 0.891 41 H 0.062 0.938 42 H 0.136 0.864 43 H 0.065 0.935 44 H 0.138 0.862 45 H 0.115 0.885 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.628 -15.029 15.503 27.253 hybrid contribution -0.469 0.176 -0.085 0.508 sum 16.159 -14.853 15.418 26.822 Atomic orbital electron populations 1.70059 1.07620 1.28674 1.50371 1.25919 0.95984 1.03230 0.93788 0.85165 0.78519 0.77394 0.78512 1.19221 1.19311 1.19392 1.21404 0.93976 0.91042 1.52492 0.92495 1.19875 0.88526 0.84325 0.93916 1.87873 1.35659 1.14304 1.95342 1.22680 0.94433 0.83271 1.02034 1.23368 0.93162 0.99737 0.83340 1.86760 1.43724 1.54037 1.42512 1.19504 0.78156 0.78125 0.84646 1.90886 1.68845 1.38916 1.41590 1.20799 1.04472 0.99816 0.89736 1.22302 0.92694 0.98517 0.97289 1.21968 1.04511 0.99886 0.96243 1.23327 0.89528 0.96811 0.91717 1.20748 0.98994 0.92382 0.87745 1.62025 1.07976 1.19668 1.39064 1.22912 0.87720 0.97806 1.02728 1.22780 1.00888 0.90467 0.87697 1.87955 1.29676 1.67007 1.47367 1.22813 0.82031 0.95090 1.01999 1.22810 1.01965 0.94944 0.90638 1.84158 1.49094 1.48912 1.23963 0.91912 0.98709 0.99398 0.89313 0.92691 0.90376 0.86484 0.79991 0.78636 0.88000 0.87358 0.91837 0.89117 0.93797 0.86383 0.93527 0.86247 0.88480 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.20 13.29 21.45 0.28 -55.91 16 2 C 0.01 0.56 5.46 84.65 0.46 1.02 16 3 Si 0.98 45.26 29.54 68.60 2.03 47.29 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.55 -33.95 9.43 25.60 0.24 -33.71 16 8 H 0.06 3.53 7.81 -2.91 -0.02 3.50 16 9 C 0.21 12.01 5.69 71.24 0.41 12.42 16 10 O -0.41 -21.15 10.30 -145.57 -1.50 -22.65 16 11 C 0.05 1.99 6.33 71.98 0.46 2.44 16 12 C 0.08 2.51 5.86 71.98 0.42 2.94 16 13 O -0.35 -13.23 10.21 -54.41 -0.56 -13.79 16 14 C 0.55 18.40 7.93 69.97 0.55 18.96 16 15 O -0.51 -17.42 16.66 19.44 0.32 -17.09 16 16 C -0.10 -2.85 7.18 24.04 0.17 -2.67 16 17 C -0.09 -1.83 10.62 22.40 0.24 -1.59 16 18 C -0.21 -3.21 9.30 22.07 0.21 -3.00 16 19 C 0.04 0.79 6.23 24.98 0.16 0.95 16 20 C 0.13 1.82 5.49 85.56 0.47 2.29 16 21 N -0.56 -9.48 4.72 -899.79 -4.24 -13.73 16 22 C 0.02 0.22 5.39 86.31 0.47 0.69 16 23 C 0.06 0.94 7.01 72.01 0.50 1.45 16 24 O -0.40 -7.59 10.83 -148.98 -1.61 -9.21 16 25 C 0.06 0.91 7.01 72.01 0.50 1.42 16 26 C 0.02 0.32 5.64 86.31 0.49 0.81 16 27 O -0.17 -4.90 10.67 -4.95 -0.05 -4.95 16 28 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 29 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 30 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 31 H 0.09 2.92 8.14 -2.38 -0.02 2.90 16 32 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 35 H 0.18 2.99 8.06 -2.91 -0.02 2.96 16 36 H 0.20 1.44 8.06 -2.91 -0.02 1.41 16 37 H 0.10 1.46 8.04 -2.39 -0.02 1.44 16 38 H 0.11 0.82 8.12 -2.39 -0.02 0.80 16 39 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.09 1.27 6.19 -2.38 -0.01 1.25 16 41 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.10 1.21 8.09 -2.39 -0.02 1.19 16 46 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 Total: -1.00 -78.54 392.46 1.39 -77.15 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: 0.97 Total: 8.49 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 5.74 Total: 4.40 kcal Atomic # 7 Polarization: -65.68 SS G_CDS: -3.96 Total: -69.64 kcal Atomic # 8 Polarization: -64.29 SS G_CDS: -3.40 Total: -67.69 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -78.54 1.39 -77.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884963538.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.821 kcal (2) G-P(sol) polarization free energy of solvation -78.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds