Wall clock time and date at job start Sat Apr 11 2020 05:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35150 * 125.69566 * 2 1 4 4 N 1.36810 * 107.18264 * 179.87927 * 3 2 1 5 5 C 1.36652 * 132.49525 * 180.08167 * 4 3 2 6 6 C 1.35533 * 120.51914 * 180.30749 * 5 4 3 7 7 N 1.40224 * 119.92917 * 180.02562 * 6 5 4 8 8 C 1.34784 * 120.00347 * 144.95181 * 7 6 5 9 9 O 1.21621 * 119.99283 * 4.65692 * 8 7 6 10 10 C 1.47414 * 120.00181 * 184.64718 * 8 7 6 11 11 C 1.41289 * 126.41639 * 359.69682 * 10 8 7 12 12 N 1.30449 * 108.02658 * 179.84761 * 11 10 8 13 13 N 1.39930 * 108.89707 * 0.41180 * 12 11 10 14 14 C 1.46505 * 125.75562 * 179.73955 * 13 12 11 15 15 C 1.50697 * 109.46541 * 269.99449 * 14 13 12 16 16 H 1.08000 * 120.00626 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99896 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99776 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00263 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47014 * 59.99551 * 19 17 15 21 21 H 1.48496 * 109.47490 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47114 * 300.00069 * 19 17 15 23 23 C 1.34274 * 108.49269 * 359.73032 * 13 12 11 24 24 C 1.50704 * 126.29325 * 179.97438 * 23 13 12 25 25 C 1.40940 * 120.14737 * 0.02562 * 6 5 4 26 26 C 1.35930 * 119.66190 * 359.97438 * 25 6 5 27 27 C 1.36988 * 107.02824 * 0.37677 * 4 3 2 28 28 N 1.32657 * 108.02862 * 359.76631 * 27 4 3 29 29 H 1.09004 * 109.47074 * 269.71833 * 1 2 3 30 30 H 1.09000 * 109.47131 * 149.71854 * 1 2 3 31 31 H 1.08996 * 109.46905 * 29.71728 * 1 2 3 32 32 H 1.07998 * 126.40905 * 0.02562 * 3 2 1 33 33 H 1.07996 * 119.74499 * 0.32873 * 5 4 3 34 34 H 0.97001 * 120.00048 * 324.95386 * 7 6 5 35 35 H 1.07999 * 125.98410 * 359.97438 * 11 10 8 36 36 H 1.08994 * 109.47207 * 29.99086 * 14 13 12 37 37 H 1.09004 * 109.47086 * 149.99910 * 14 13 12 38 38 H 0.97002 * 119.99678 * 179.97438 * 18 17 15 39 39 H 1.08994 * 109.47047 * 270.00213 * 24 23 13 40 40 H 1.08994 * 109.47154 * 30.00845 * 24 23 13 41 41 H 1.09001 * 109.46797 * 150.00515 * 24 23 13 42 42 H 1.08000 * 120.16699 * 180.02562 * 25 6 5 43 43 H 1.08002 * 120.27926 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2956 1.0976 0.0000 4 7 3.5929 0.6632 0.0028 5 6 4.7882 1.3255 0.0054 6 6 5.9561 0.6379 0.0016 7 7 7.1756 1.3301 0.0049 8 6 8.2336 0.8284 0.6724 9 8 8.1566 -0.2645 1.2006 10 6 9.4839 1.6040 0.7620 11 6 9.7236 2.8770 0.1977 12 7 10.9432 3.2288 0.4985 13 7 11.5367 2.2087 1.2504 14 6 12.9039 2.2179 1.7768 15 6 13.8370 1.6099 0.7617 16 1 13.4504 1.2521 -0.1811 17 6 15.1845 1.5105 1.0365 18 7 15.6554 1.9468 2.1843 19 14 16.3414 0.7575 -0.2221 20 1 16.2887 1.5480 -1.4781 21 1 17.7273 0.7678 0.3110 22 1 15.9278 -0.6414 -0.5000 23 6 10.6419 1.2201 1.4082 24 6 10.8616 -0.0714 2.1530 25 6 5.9477 -0.7715 -0.0057 26 6 4.7625 -1.4371 -0.0084 27 6 3.5574 -0.7062 -0.0042 28 7 2.2858 -1.0840 -0.0058 29 1 -0.3633 -0.0051 1.0277 30 1 -0.3633 -0.8874 -0.5182 31 1 -0.3633 0.8925 -0.5094 32 1 1.9637 2.1253 0.0004 33 1 4.8024 2.4054 0.0110 34 1 7.2577 2.1701 -0.4731 35 1 9.0196 3.4579 -0.3796 36 1 13.2078 3.2446 1.9806 37 1 12.9421 1.6377 2.6988 38 1 16.6033 1.8765 2.3778 39 1 11.2502 -0.8245 1.4676 40 1 11.5778 0.0910 2.9584 41 1 9.9156 -0.4148 2.5718 42 1 6.8782 -1.3198 -0.0084 43 1 4.7445 -2.5170 -0.0144 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888678479.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:18 Heat of formation + Delta-G solvation = 124.910522 kcal Electronic energy + Delta-G solvation = -27532.229682 eV Core-core repulsion = 23580.338094 eV Total energy + Delta-G solvation = -3951.891588 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.95835 -41.06507 -39.75850 -37.39233 -34.69670 -33.98968 -33.72755 -32.23522 -31.56549 -31.07265 -29.08949 -27.77113 -27.02247 -26.62649 -23.80407 -23.59032 -23.06006 -22.03359 -20.75960 -20.18934 -19.33181 -17.96234 -17.82001 -17.04340 -16.85141 -16.26229 -16.08444 -15.30270 -15.15852 -14.79523 -14.70468 -14.62445 -14.30541 -14.09002 -13.62412 -13.47542 -13.32673 -13.09873 -12.76100 -12.55023 -12.45590 -12.24248 -12.21139 -11.90588 -11.76441 -11.59580 -11.22735 -11.18825 -10.93932 -10.46101 -10.36797 -10.25032 -10.06457 -10.04696 -9.65532 -8.77755 -8.75406 -8.45667 -8.13268 -7.91778 -6.40811 -4.49353 0.53528 1.08595 1.92789 2.23107 2.55909 2.67198 2.96647 3.14973 3.19697 3.21916 3.32852 3.34369 3.67116 4.01627 4.17931 4.24596 4.46627 4.73478 4.78193 4.93994 4.98757 5.01293 5.05126 5.12738 5.32732 5.38608 5.40200 5.58100 5.59491 5.68952 5.79667 5.85311 5.89895 5.99746 6.10756 6.31306 6.38031 6.43846 6.48494 6.64334 6.80188 6.90061 6.99323 7.27158 7.45276 7.64363 7.68482 7.72686 8.15469 8.24113 8.55206 9.18018 10.67346 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032130 B = 0.001980 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.237022 B =14138.221136 C =14477.647586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.053 3.947 3 C -0.103 4.103 4 N -0.344 5.344 5 C 0.000 4.000 6 C 0.156 3.844 7 N -0.671 5.671 8 C 0.610 3.390 9 O -0.532 6.532 10 C -0.337 4.337 11 C 0.060 3.940 12 N -0.291 5.291 13 N -0.311 5.311 14 C 0.250 3.750 15 C -0.543 4.543 16 H 0.065 0.935 17 C 0.069 3.931 18 N -0.888 5.888 19 Si 0.909 3.091 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.273 1.273 23 C 0.174 3.826 24 C -0.096 4.096 25 C -0.091 4.091 26 C -0.071 4.071 27 C 0.217 3.783 28 N -0.494 5.494 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.179 0.821 33 H 0.164 0.836 34 H 0.412 0.588 35 H 0.177 0.823 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.271 0.729 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.162 0.838 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.934 -0.615 -3.759 23.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.081 4.081 3 C -0.235 4.235 4 N -0.014 5.014 5 C -0.126 4.126 6 C 0.058 3.942 7 N -0.317 5.317 8 C 0.403 3.597 9 O -0.409 6.409 10 C -0.353 4.353 11 C -0.128 4.128 12 N -0.111 5.111 13 N -0.087 5.087 14 C 0.133 3.867 15 C -0.581 4.581 16 H 0.083 0.917 17 C -0.136 4.136 18 N -0.525 5.525 19 Si 0.735 3.265 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.198 1.198 23 C 0.036 3.964 24 C -0.154 4.154 25 C -0.116 4.116 26 C -0.092 4.092 27 C -0.027 4.027 28 N -0.215 5.215 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.197 0.803 33 H 0.181 0.819 34 H 0.249 0.751 35 H 0.194 0.806 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.180 0.820 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -21.932 -1.119 -3.290 22.205 hybrid contribution 0.534 0.650 -0.863 1.206 sum -21.397 -0.469 -4.153 21.802 Atomic orbital electron populations 1.20112 0.87016 1.03013 1.02649 1.20874 0.96750 0.88087 1.02362 1.22332 0.80465 1.00967 1.19706 1.42384 1.05446 1.08603 1.45005 1.20900 0.82447 0.98364 1.10900 1.16911 0.84904 0.91613 1.00744 1.43236 1.08571 1.26351 1.53523 1.17414 0.81608 0.84736 0.75988 1.90710 1.82851 1.20557 1.46804 1.19439 0.95866 1.00259 1.19701 1.23741 0.94790 0.94508 0.99762 1.77179 1.08344 1.12640 1.12893 1.49444 1.12831 1.10529 1.35885 1.19908 0.71103 1.00522 0.95135 1.21181 0.92113 1.42092 1.02750 0.91674 1.24921 0.97860 0.94903 0.95895 1.69899 1.15132 1.45159 1.22354 0.86367 0.79262 0.79792 0.81036 1.19892 1.20821 1.19806 1.21504 0.88245 0.91999 0.94674 1.20614 1.03933 0.91174 0.99636 1.21378 0.99653 0.92406 0.98163 1.20204 0.87226 1.00721 1.01000 1.20974 0.94498 0.80427 1.06761 1.70658 0.98157 1.29241 1.23423 0.90902 0.90789 0.90961 0.80340 0.81877 0.75126 0.80614 0.92384 0.92418 0.91969 0.89543 0.90631 0.88733 0.82016 0.82736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.42 36.01 0.38 -0.13 16 2 C 0.05 0.58 7.06 -82.98 -0.59 0.00 16 3 C -0.10 -1.01 11.66 -16.43 -0.19 -1.20 16 4 N -0.34 -3.86 2.95 -62.46 -0.18 -4.05 16 5 C 0.00 0.00 10.85 -16.37 -0.18 -0.18 16 6 C 0.16 1.69 6.25 -83.96 -0.52 1.17 16 7 N -0.67 -7.03 5.32 -11.02 -0.06 -7.09 16 8 C 0.61 8.69 7.67 -12.52 -0.10 8.59 16 9 O -0.53 -8.65 12.27 5.26 0.06 -8.59 16 10 C -0.34 -5.43 6.13 -105.07 -0.64 -6.08 16 11 C 0.06 0.91 11.51 -16.98 -0.20 0.72 16 12 N -0.29 -5.78 12.50 30.86 0.39 -5.40 16 13 N -0.31 -6.55 3.56 -57.77 -0.21 -6.75 16 14 C 0.25 5.93 5.97 -5.19 -0.03 5.90 16 15 C -0.54 -14.06 9.39 -34.44 -0.32 -14.38 16 16 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 17 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 18 N -0.89 -23.85 13.29 55.43 0.74 -23.12 16 19 Si 0.91 20.21 29.54 -169.99 -5.02 15.19 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 23 C 0.17 3.23 7.01 -81.59 -0.57 2.66 16 24 C -0.10 -1.57 9.57 36.01 0.34 -1.23 16 25 C -0.09 -1.07 8.69 -39.39 -0.34 -1.41 16 26 C -0.07 -0.81 10.10 -39.39 -0.40 -1.21 16 27 C 0.22 2.81 7.80 -156.04 -1.22 1.59 16 28 N -0.49 -6.75 11.32 -9.00 -0.10 -6.85 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.16 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.41 3.04 7.78 -40.82 -0.32 2.72 16 35 H 0.18 1.77 7.51 -52.49 -0.39 1.38 16 36 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.06 1.36 7.02 -51.93 -0.36 0.99 16 38 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 39 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.07 1.23 7.05 -51.93 -0.37 0.86 16 41 H 0.09 1.46 6.50 -51.93 -0.34 1.13 16 42 H 0.16 2.01 6.26 -52.49 -0.33 1.68 16 43 H 0.16 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 370.70 15.07 5.59 5.59 Total: -1.00 -32.05 370.70 -8.51 -40.56 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -5.04 Total: 4.02 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -4.68 Total: -3.51 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: 0.57 Total: -53.25 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.06 Total: -8.59 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.05 -8.51 -40.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888678479.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.472 kcal (2) G-P(sol) polarization free energy of solvation -32.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds