Wall clock time and date at job start Sat Apr 11 2020 05:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35150 * 125.69566 * 2 1 4 4 N 1.36810 * 107.18264 * 179.87927 * 3 2 1 5 5 C 1.36652 * 132.49525 * 180.08167 * 4 3 2 6 6 C 1.35533 * 120.51914 * 180.30749 * 5 4 3 7 7 N 1.40224 * 119.92917 * 180.02562 * 6 5 4 8 8 C 1.34784 * 120.00347 * 144.95181 * 7 6 5 9 9 O 1.21621 * 119.99283 * 4.65692 * 8 7 6 10 10 C 1.47414 * 120.00181 * 184.64718 * 8 7 6 11 11 C 1.41289 * 126.41639 * 359.69682 * 10 8 7 12 12 N 1.30449 * 108.02658 * 179.84761 * 11 10 8 13 13 N 1.39930 * 108.89707 * 0.41180 * 12 11 10 14 14 C 1.46505 * 125.75562 * 179.73955 * 13 12 11 15 15 C 1.50697 * 109.46541 * 269.99449 * 14 13 12 16 16 H 1.08000 * 120.00626 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99896 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99776 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00263 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47014 * 59.99551 * 19 17 15 21 21 H 1.48496 * 109.47490 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47114 * 300.00069 * 19 17 15 23 23 C 1.34274 * 108.49269 * 359.73032 * 13 12 11 24 24 C 1.50704 * 126.29325 * 179.97438 * 23 13 12 25 25 C 1.40940 * 120.14737 * 0.02562 * 6 5 4 26 26 C 1.35930 * 119.66190 * 359.97438 * 25 6 5 27 27 C 1.36988 * 107.02824 * 0.37677 * 4 3 2 28 28 N 1.32657 * 108.02862 * 359.76631 * 27 4 3 29 29 H 1.09004 * 109.47074 * 269.71833 * 1 2 3 30 30 H 1.09000 * 109.47131 * 149.71854 * 1 2 3 31 31 H 1.08996 * 109.46905 * 29.71728 * 1 2 3 32 32 H 1.07998 * 126.40905 * 0.02562 * 3 2 1 33 33 H 1.07996 * 119.74499 * 0.32873 * 5 4 3 34 34 H 0.97001 * 120.00048 * 324.95386 * 7 6 5 35 35 H 1.07999 * 125.98410 * 359.97438 * 11 10 8 36 36 H 1.08994 * 109.47207 * 29.99086 * 14 13 12 37 37 H 1.09004 * 109.47086 * 149.99910 * 14 13 12 38 38 H 0.97002 * 119.99678 * 179.97438 * 18 17 15 39 39 H 1.08994 * 109.47047 * 270.00213 * 24 23 13 40 40 H 1.08994 * 109.47154 * 30.00845 * 24 23 13 41 41 H 1.09001 * 109.46797 * 150.00515 * 24 23 13 42 42 H 1.08000 * 120.16699 * 180.02562 * 25 6 5 43 43 H 1.08002 * 120.27926 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2956 1.0976 0.0000 4 7 3.5929 0.6632 0.0028 5 6 4.7882 1.3255 0.0054 6 6 5.9561 0.6379 0.0016 7 7 7.1756 1.3301 0.0049 8 6 8.2336 0.8284 0.6724 9 8 8.1566 -0.2645 1.2006 10 6 9.4839 1.6040 0.7620 11 6 9.7236 2.8770 0.1977 12 7 10.9432 3.2288 0.4985 13 7 11.5367 2.2087 1.2504 14 6 12.9039 2.2179 1.7768 15 6 13.8370 1.6099 0.7617 16 1 13.4504 1.2521 -0.1811 17 6 15.1845 1.5105 1.0365 18 7 15.6554 1.9468 2.1843 19 14 16.3414 0.7575 -0.2221 20 1 16.2887 1.5480 -1.4781 21 1 17.7273 0.7678 0.3110 22 1 15.9278 -0.6414 -0.5000 23 6 10.6419 1.2201 1.4082 24 6 10.8616 -0.0714 2.1530 25 6 5.9477 -0.7715 -0.0057 26 6 4.7625 -1.4371 -0.0084 27 6 3.5574 -0.7062 -0.0042 28 7 2.2858 -1.0840 -0.0058 29 1 -0.3633 -0.0051 1.0277 30 1 -0.3633 -0.8874 -0.5182 31 1 -0.3633 0.8925 -0.5094 32 1 1.9637 2.1253 0.0004 33 1 4.8024 2.4054 0.0110 34 1 7.2577 2.1701 -0.4731 35 1 9.0196 3.4579 -0.3796 36 1 13.2078 3.2446 1.9806 37 1 12.9421 1.6377 2.6988 38 1 16.6033 1.8765 2.3778 39 1 11.2502 -0.8245 1.4676 40 1 11.5778 0.0910 2.9584 41 1 9.9156 -0.4148 2.5718 42 1 6.8782 -1.3198 -0.0084 43 1 4.7445 -2.5170 -0.0144 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888678479.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:17 Heat of formation + Delta-G solvation = 105.977932 kcal Electronic energy + Delta-G solvation = -27533.050660 eV Core-core repulsion = 23580.338094 eV Total energy + Delta-G solvation = -3952.712567 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.77235 -42.39757 -40.83434 -38.33614 -35.88020 -35.55470 -34.59510 -33.83316 -32.83285 -32.01116 -30.08852 -29.07850 -28.33944 -27.68057 -25.44871 -24.39778 -24.21705 -23.11325 -21.63657 -21.32340 -20.67276 -18.97005 -18.85849 -18.78277 -17.97796 -17.23344 -17.02080 -16.71112 -16.37781 -16.20939 -15.79977 -15.66429 -15.45370 -15.14367 -14.82965 -14.34536 -14.30069 -14.10181 -14.05700 -13.86676 -13.68629 -13.57666 -13.12405 -13.07452 -13.00947 -12.93513 -12.69243 -12.58242 -12.29991 -12.06633 -11.88586 -11.74976 -11.09988 -11.01916 -10.80148 -10.75800 -10.28861 -9.60783 -9.19183 -8.74351 -8.38061 -6.54263 -0.27446 0.20580 0.65497 1.29484 1.35594 1.38825 1.39678 1.48205 1.69668 1.84804 2.24207 2.32586 2.37256 2.60536 2.94588 3.24403 3.52804 3.61447 3.71573 3.78404 3.97960 4.01358 4.16921 4.24616 4.34467 4.42454 4.51654 4.62178 4.71351 4.79173 4.88642 4.89397 4.94695 4.99846 5.06341 5.10197 5.16445 5.17351 5.26592 5.48746 5.55427 5.65169 5.74463 5.74886 6.01245 6.11447 6.38382 6.54292 6.82497 6.91209 7.14322 7.16991 8.69494 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032130 B = 0.001980 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.237022 B =14138.221136 C =14477.647586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.031 3.969 3 C -0.094 4.094 4 N -0.350 5.350 5 C 0.021 3.979 6 C 0.136 3.864 7 N -0.648 5.648 8 C 0.614 3.386 9 O -0.555 6.555 10 C -0.330 4.330 11 C 0.084 3.916 12 N -0.336 5.336 13 N -0.337 5.337 14 C 0.266 3.734 15 C -0.556 4.556 16 H 0.053 0.947 17 C 0.024 3.976 18 N -0.916 5.916 19 Si 0.969 3.031 20 H -0.273 1.273 21 H -0.275 1.275 22 H -0.267 1.267 23 C 0.152 3.848 24 C -0.089 4.089 25 C -0.097 4.097 26 C -0.080 4.080 27 C 0.191 3.809 28 N -0.530 5.530 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.219 0.781 33 H 0.205 0.795 34 H 0.430 0.570 35 H 0.233 0.767 36 H 0.032 0.968 37 H 0.051 0.949 38 H 0.274 0.726 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.104 0.896 42 H 0.150 0.850 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.130 0.679 -5.069 25.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.102 4.102 3 C -0.225 4.225 4 N -0.021 5.021 5 C -0.104 4.104 6 C 0.039 3.961 7 N -0.296 5.296 8 C 0.406 3.594 9 O -0.434 6.434 10 C -0.345 4.345 11 C -0.104 4.104 12 N -0.155 5.155 13 N -0.114 5.114 14 C 0.148 3.852 15 C -0.594 4.594 16 H 0.072 0.928 17 C -0.177 4.177 18 N -0.554 5.554 19 Si 0.793 3.207 20 H -0.198 1.198 21 H -0.200 1.200 22 H -0.191 1.191 23 C 0.016 3.984 24 C -0.147 4.147 25 C -0.122 4.122 26 C -0.101 4.101 27 C -0.053 4.053 28 N -0.252 5.252 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.236 0.764 33 H 0.222 0.778 34 H 0.270 0.730 35 H 0.249 0.751 36 H 0.050 0.950 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.088 0.912 41 H 0.122 0.878 42 H 0.168 0.832 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -24.181 0.189 -4.618 24.618 hybrid contribution 0.970 0.261 -0.477 1.112 sum -23.211 0.449 -5.094 23.768 Atomic orbital electron populations 1.20220 0.84773 1.04053 1.03454 1.21585 0.98416 0.87919 1.02292 1.23015 0.79533 1.02388 1.17550 1.42616 1.06458 1.08178 1.44895 1.21383 0.81291 0.99944 1.07783 1.16891 0.85345 0.91265 1.02592 1.42831 1.07518 1.26662 1.52553 1.17136 0.81811 0.84221 0.76282 1.90714 1.83239 1.21492 1.47950 1.19663 0.95822 1.00572 1.18473 1.24605 0.93864 0.94042 0.97850 1.77132 1.10483 1.13369 1.14498 1.49120 1.12385 1.11999 1.37859 1.19378 0.72800 0.98439 0.94610 1.21362 0.92996 1.42283 1.02727 0.92828 1.25708 0.99244 0.95164 0.97598 1.69986 1.15594 1.46001 1.23810 0.85428 0.77529 0.79098 0.78620 1.19832 1.19963 1.19140 1.21972 0.88874 0.92146 0.95409 1.20591 1.04242 0.90580 0.99310 1.21315 0.99097 0.93267 0.98541 1.20282 0.87095 1.01240 1.01492 1.21160 0.94598 0.81636 1.07865 1.70623 0.98999 1.31062 1.24541 0.90106 0.91449 0.88259 0.76443 0.77842 0.73017 0.75099 0.94999 0.93110 0.91696 0.89657 0.91160 0.87768 0.83219 0.82121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 10.42 71.24 0.74 -0.07 16 2 C 0.03 0.61 7.06 41.60 0.29 0.91 16 3 C -0.09 -1.53 11.66 83.20 0.97 -0.56 16 4 N -0.35 -6.92 2.95 -351.52 -1.04 -7.96 16 5 C 0.02 0.33 10.85 83.32 0.90 1.23 16 6 C 0.14 2.61 6.25 37.83 0.24 2.85 16 7 N -0.65 -11.52 5.32 -307.01 -1.63 -13.15 16 8 C 0.61 16.32 7.67 86.66 0.66 16.98 16 9 O -0.56 -17.62 12.27 -4.10 -0.05 -17.67 16 10 C -0.33 -10.12 6.13 -20.16 -0.12 -10.25 16 11 C 0.08 2.35 11.51 85.65 0.99 3.34 16 12 N -0.34 -13.17 12.50 -56.28 -0.70 -13.87 16 13 N -0.34 -14.50 3.56 -336.67 -1.20 -15.70 16 14 C 0.27 13.17 5.97 85.63 0.51 13.68 16 15 C -0.56 -29.53 9.39 25.60 0.24 -29.29 16 16 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 17 C 0.02 1.29 5.46 84.66 0.46 1.75 16 18 N -0.92 -50.13 13.29 21.45 0.28 -49.84 16 19 Si 0.97 41.56 29.54 68.60 2.03 43.59 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 22 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 23 C 0.15 5.69 7.01 42.14 0.30 5.98 16 24 C -0.09 -3.00 9.57 71.24 0.68 -2.32 16 25 C -0.10 -2.22 8.69 22.40 0.19 -2.02 16 26 C -0.08 -1.85 10.10 22.40 0.23 -1.62 16 27 C 0.19 4.78 7.80 134.11 1.05 5.83 16 28 N -0.53 -14.21 11.32 -182.39 -2.06 -16.28 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.22 1.59 8.06 -2.91 -0.02 1.56 16 33 H 0.20 1.36 8.06 -2.91 -0.02 1.34 16 34 H 0.43 4.36 7.78 -92.71 -0.72 3.64 16 35 H 0.23 3.50 7.51 -2.91 -0.02 3.48 16 36 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.05 2.52 7.02 -2.39 -0.02 2.50 16 38 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 39 H 0.08 2.84 8.14 -2.39 -0.02 2.83 16 40 H 0.07 2.39 7.05 -2.39 -0.02 2.37 16 41 H 0.10 3.26 6.50 -2.39 -0.02 3.24 16 42 H 0.15 3.75 6.26 -2.91 -0.02 3.73 16 43 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -72.59 370.70 4.30 -68.29 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.35 Total: 16.18 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 8.33 Total: 6.42 kcal Atomic # 7 Polarization: -110.45 SS G_CDS: -6.35 Total: -116.80 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.05 Total: -17.67 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -72.59 4.30 -68.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888678479.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.266 kcal (2) G-P(sol) polarization free energy of solvation -72.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds