Wall clock time and date at job start Sat Apr 11 2020 05:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38047 * 126.29498 * 2 1 4 4 C 1.47415 * 126.41271 * 0.02562 * 3 2 1 5 5 O 1.21617 * 120.00213 * 0.02562 * 4 3 2 6 6 N 1.34776 * 119.99654 * 180.02562 * 4 3 2 7 7 C 1.40231 * 119.99905 * 185.27603 * 6 4 3 8 8 C 1.40936 * 119.92687 * 33.09134 * 7 6 4 9 9 C 1.35928 * 119.66589 * 179.97438 * 8 7 6 10 10 C 1.50705 * 120.28071 * 179.97438 * 9 8 7 11 11 C 1.40939 * 119.44470 * 359.97438 * 9 8 7 12 12 N 1.32657 * 132.22713 * 179.97438 * 11 9 8 13 13 C 1.33469 * 109.15046 * 180.02562 * 12 11 9 14 14 C 1.35149 * 108.61340 * 0.02562 * 13 12 11 15 15 N 1.36809 * 107.17982 * 359.97438 * 14 13 12 16 16 C 1.35539 * 119.92820 * 213.06745 * 7 6 4 17 17 C 1.41297 * 107.17102 * 180.28175 * 3 2 1 18 18 N 1.30447 * 108.02237 * 359.54857 * 17 3 2 19 19 N 1.34271 * 126.29109 * 180.02562 * 2 1 3 20 20 C 1.46506 * 125.75480 * 359.95559 * 19 2 1 21 21 C 1.50698 * 109.46634 * 90.00382 * 20 19 2 22 22 H 1.07999 * 120.00242 * 359.97438 * 21 20 19 23 23 C 1.37875 * 120.00107 * 180.02562 * 21 20 19 24 24 N 1.31516 * 119.99943 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00340 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47060 * 89.99598 * 25 23 21 27 27 H 1.48504 * 109.46865 * 209.99306 * 25 23 21 28 28 H 1.48497 * 109.46973 * 329.99631 * 25 23 21 29 29 H 1.09003 * 109.46689 * 89.98122 * 1 2 3 30 30 H 1.08998 * 109.47530 * 209.98162 * 1 2 3 31 31 H 1.08999 * 109.46782 * 329.98371 * 1 2 3 32 32 H 0.96995 * 120.00549 * 5.27642 * 6 4 3 33 33 H 1.08002 * 120.16578 * 359.96069 * 8 7 6 34 34 H 1.08994 * 109.46742 * 270.02009 * 10 9 8 35 35 H 1.08998 * 109.46554 * 30.01842 * 10 9 8 36 36 H 1.08995 * 109.47150 * 150.01584 * 10 9 8 37 37 H 1.08003 * 125.69332 * 179.97438 * 13 12 11 38 38 H 1.07997 * 126.40661 * 180.26301 * 14 13 12 39 39 H 1.07994 * 119.73732 * 0.02562 * 16 7 6 40 40 H 1.07999 * 125.98425 * 179.74263 * 17 3 2 41 41 H 1.09000 * 109.47033 * 210.00170 * 20 19 2 42 42 H 1.09002 * 109.47091 * 330.00529 * 20 19 2 43 43 H 0.96995 * 120.00737 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1126 0.0000 4 6 1.8860 2.5201 0.0005 5 8 0.6996 2.7877 0.0015 6 7 2.8002 3.5105 -0.0001 7 6 2.3873 4.8459 0.1121 8 6 1.2504 5.1682 0.8801 9 6 0.8552 6.4645 0.9857 10 6 -0.3588 6.8247 1.8029 11 6 1.5902 7.4689 0.3245 12 7 1.4377 8.7848 0.2536 13 6 2.4066 9.2974 -0.5079 14 6 3.1981 8.2890 -0.9358 15 7 2.6917 7.1293 -0.4158 16 6 3.0827 5.8239 -0.5179 17 6 3.6592 0.6497 -0.0066 18 7 3.6341 -0.6545 -0.0006 19 7 2.3018 -1.0823 -0.0005 20 6 1.8501 -2.4760 -0.0002 21 6 1.6945 -2.9538 -1.4209 22 1 1.9100 -2.2860 -2.2419 23 6 1.2760 -4.2431 -1.6727 24 7 1.0131 -5.0562 -0.6730 25 14 1.0838 -4.8357 -3.4338 26 1 2.3646 -5.4248 -3.9004 27 1 0.0142 -5.8640 -3.4961 28 1 0.7199 -3.6893 -4.3048 29 1 -0.3633 0.0003 -1.0277 30 1 -0.3634 -0.8901 0.5135 31 1 -0.3633 0.8898 0.5141 32 1 3.7437 3.2996 -0.0781 33 1 0.6958 4.3891 1.3821 34 1 -1.2447 6.7980 1.1685 35 1 -0.4735 6.1096 2.6175 36 1 -0.2360 7.8268 2.2136 37 1 2.5360 10.3435 -0.7436 38 1 4.0701 8.3818 -1.5661 39 1 3.9529 5.5695 -1.1047 40 1 4.5450 1.2675 -0.0123 41 1 2.5851 -3.0959 0.5132 42 1 0.8918 -2.5472 0.5142 43 1 0.7191 -5.9634 -0.8500 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891176303.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:27 Heat of formation + Delta-G solvation = 124.524448 kcal Electronic energy + Delta-G solvation = -27856.930717 eV Core-core repulsion = 23905.022387 eV Total energy + Delta-G solvation = -3951.908330 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.94459 -41.05888 -39.73842 -37.36926 -34.98834 -34.35637 -33.94776 -32.22175 -31.39653 -29.96192 -29.25205 -27.55008 -27.23262 -26.75338 -23.88548 -23.20530 -23.02319 -21.79716 -21.40187 -20.15918 -19.36908 -18.07907 -17.52691 -17.08052 -16.84221 -16.30546 -16.05355 -15.30354 -15.23149 -14.86227 -14.57254 -14.31197 -14.20093 -14.13073 -13.79951 -13.42038 -13.38766 -13.21800 -12.75962 -12.56679 -12.32170 -12.22465 -12.12437 -11.91050 -11.90145 -11.59914 -11.20233 -10.95943 -10.92052 -10.46263 -10.36197 -10.27978 -10.03524 -10.02322 -9.66990 -8.78373 -8.74999 -8.53174 -8.13749 -7.84276 -6.41069 -4.49459 0.53697 1.09198 1.94659 2.23641 2.58101 2.73530 2.97269 3.13245 3.20081 3.22838 3.31172 3.33958 3.68647 4.07402 4.17811 4.27127 4.48723 4.69342 4.76844 4.92784 4.97781 5.04177 5.09461 5.23468 5.31526 5.39749 5.52056 5.56687 5.62226 5.71636 5.81817 5.83730 5.99519 6.03428 6.13974 6.31566 6.38225 6.44486 6.49772 6.64547 6.80233 6.89480 6.99582 7.27922 7.45536 7.64440 7.68395 7.71217 8.16010 8.24529 8.55452 9.17962 10.67154 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023903 B = 0.002168 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.135994 B =12909.915457 C =13156.505654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.174 3.826 3 C -0.337 4.337 4 C 0.609 3.391 5 O -0.530 6.530 6 N -0.671 5.671 7 C 0.166 3.834 8 C -0.101 4.101 9 C -0.033 4.033 10 C -0.101 4.101 11 C 0.215 3.785 12 N -0.492 5.492 13 C 0.025 3.975 14 C -0.101 4.101 15 N -0.342 5.342 16 C -0.012 4.012 17 C 0.060 3.940 18 N -0.291 5.291 19 N -0.311 5.311 20 C 0.250 3.750 21 C -0.542 4.542 22 H 0.065 0.935 23 C 0.068 3.932 24 N -0.888 5.888 25 Si 0.909 3.091 26 H -0.276 1.276 27 H -0.282 1.282 28 H -0.271 1.271 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.412 0.588 33 H 0.157 0.843 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.179 0.821 38 H 0.180 0.820 39 H 0.164 0.836 40 H 0.177 0.823 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.497 21.546 2.869 22.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.036 3.964 3 C -0.353 4.353 4 C 0.401 3.599 5 O -0.407 6.407 6 N -0.316 5.316 7 C 0.068 3.932 8 C -0.126 4.126 9 C -0.036 4.036 10 C -0.159 4.159 11 C -0.029 4.029 12 N -0.212 5.212 13 C -0.128 4.128 14 C -0.234 4.234 15 N -0.013 5.013 16 C -0.138 4.138 17 C -0.128 4.128 18 N -0.111 5.111 19 N -0.087 5.087 20 C 0.133 3.867 21 C -0.580 4.580 22 H 0.083 0.917 23 C -0.136 4.136 24 N -0.526 5.526 25 Si 0.735 3.265 26 H -0.202 1.202 27 H -0.207 1.207 28 H -0.196 1.196 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.249 0.751 33 H 0.175 0.825 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.196 0.804 38 H 0.197 0.803 39 H 0.181 0.819 40 H 0.194 0.806 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.708 20.612 3.288 21.048 hybrid contribution 1.015 -0.343 -1.649 1.967 sum 3.723 20.270 1.639 20.674 Atomic orbital electron populations 1.20613 0.86571 1.03996 1.04157 1.21500 0.95053 0.86422 0.93457 1.19446 0.93386 0.91616 1.30816 1.17414 0.84748 0.83776 0.73928 1.90732 1.16394 1.83946 1.49647 1.43273 1.11182 1.02608 1.74563 1.16855 0.95865 0.84115 0.96378 1.21095 0.96496 0.96082 0.98895 1.18899 0.97193 0.89649 0.97847 1.20647 0.93723 1.02909 0.98580 1.20778 0.90295 0.92195 0.99660 1.70726 1.25056 1.03744 1.21659 1.22461 0.92711 0.99493 0.98106 1.22617 1.06324 0.83439 1.10993 1.42400 1.20740 1.05699 1.32453 1.20831 1.05317 0.81356 1.06248 1.23744 0.96174 0.92744 1.00122 1.77178 0.98641 1.12155 1.23094 1.49443 1.02437 1.08434 1.48387 1.19911 0.96523 0.70659 0.99591 1.21217 1.47728 0.98214 0.90871 0.91652 1.24923 0.94351 0.95980 0.98363 1.69903 1.44284 1.07205 1.31160 0.86314 0.78147 0.78679 0.83347 1.20214 1.20725 1.19593 0.89590 0.90609 0.88737 0.75130 0.82530 0.90360 0.90762 0.90411 0.80400 0.80271 0.81912 0.80611 0.92377 0.92404 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.57 9.57 36.01 0.34 -1.23 16 2 C 0.17 3.24 7.01 -81.59 -0.57 2.66 16 3 C -0.34 -5.46 6.13 -105.07 -0.64 -6.11 16 4 C 0.61 8.78 7.57 -12.52 -0.09 8.69 16 5 O -0.53 -8.77 12.51 5.26 0.07 -8.70 16 6 N -0.67 -7.19 5.33 -11.02 -0.06 -7.25 16 7 C 0.17 1.85 6.24 -83.96 -0.52 1.33 16 8 C -0.10 -1.22 8.30 -39.39 -0.33 -1.55 16 9 C -0.03 -0.39 5.90 -104.43 -0.62 -1.01 16 10 C -0.10 -0.98 10.02 36.01 0.36 -0.61 16 11 C 0.21 2.78 7.51 -156.04 -1.17 1.60 16 12 N -0.49 -6.47 11.31 -12.78 -0.14 -6.62 16 13 C 0.03 0.26 11.83 -17.94 -0.21 0.05 16 14 C -0.10 -0.95 11.76 -16.43 -0.19 -1.14 16 15 N -0.34 -3.86 2.95 -62.46 -0.18 -4.04 16 16 C -0.01 -0.12 10.84 -16.37 -0.18 -0.30 16 17 C 0.06 0.92 11.51 -16.98 -0.20 0.73 16 18 N -0.29 -5.80 12.50 30.86 0.39 -5.41 16 19 N -0.31 -6.56 3.56 -57.77 -0.21 -6.77 16 20 C 0.25 5.93 5.97 -5.19 -0.03 5.90 16 21 C -0.54 -14.06 9.39 -34.44 -0.32 -14.38 16 22 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 23 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 24 N -0.89 -23.88 13.29 55.43 0.74 -23.14 16 25 Si 0.91 20.26 29.54 -169.99 -5.02 15.24 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 28 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 29 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 30 H 0.08 1.23 7.05 -51.93 -0.37 0.86 16 31 H 0.09 1.45 6.50 -51.93 -0.34 1.11 16 32 H 0.41 3.12 7.78 -40.82 -0.32 2.80 16 33 H 0.16 1.97 6.44 -52.49 -0.34 1.64 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 36 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 37 H 0.18 1.20 8.06 -52.48 -0.42 0.78 16 38 H 0.18 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.18 1.79 7.51 -52.49 -0.39 1.40 16 41 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 42 H 0.06 1.36 7.02 -51.93 -0.36 0.99 16 43 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 370.48 15.07 5.58 5.58 Total: -1.00 -32.05 370.48 -8.36 -40.41 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -5.04 Total: 4.39 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -4.47 Total: -3.70 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 0.53 Total: -53.22 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.07 Total: -8.70 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.05 -8.36 -40.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891176303.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.930 kcal (2) G-P(sol) polarization free energy of solvation -32.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds