Wall clock time and date at job start Sat Apr 11 2020 05:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38047 * 126.29498 * 2 1 4 4 C 1.47415 * 126.41271 * 0.02562 * 3 2 1 5 5 O 1.21617 * 120.00213 * 0.02562 * 4 3 2 6 6 N 1.34776 * 119.99654 * 180.02562 * 4 3 2 7 7 C 1.40231 * 119.99905 * 185.27603 * 6 4 3 8 8 C 1.40936 * 119.92687 * 33.09134 * 7 6 4 9 9 C 1.35928 * 119.66589 * 179.97438 * 8 7 6 10 10 C 1.50705 * 120.28071 * 179.97438 * 9 8 7 11 11 C 1.40939 * 119.44470 * 359.97438 * 9 8 7 12 12 N 1.32657 * 132.22713 * 179.97438 * 11 9 8 13 13 C 1.33469 * 109.15046 * 180.02562 * 12 11 9 14 14 C 1.35149 * 108.61340 * 0.02562 * 13 12 11 15 15 N 1.36809 * 107.17982 * 359.97438 * 14 13 12 16 16 C 1.35539 * 119.92820 * 213.06745 * 7 6 4 17 17 C 1.41297 * 107.17102 * 180.28175 * 3 2 1 18 18 N 1.30447 * 108.02237 * 359.54857 * 17 3 2 19 19 N 1.34271 * 126.29109 * 180.02562 * 2 1 3 20 20 C 1.46506 * 125.75480 * 359.95559 * 19 2 1 21 21 C 1.50698 * 109.46634 * 90.00382 * 20 19 2 22 22 H 1.07999 * 120.00242 * 359.97438 * 21 20 19 23 23 C 1.37875 * 120.00107 * 180.02562 * 21 20 19 24 24 N 1.31516 * 119.99943 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00340 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47060 * 89.99598 * 25 23 21 27 27 H 1.48504 * 109.46865 * 209.99306 * 25 23 21 28 28 H 1.48497 * 109.46973 * 329.99631 * 25 23 21 29 29 H 1.09003 * 109.46689 * 89.98122 * 1 2 3 30 30 H 1.08998 * 109.47530 * 209.98162 * 1 2 3 31 31 H 1.08999 * 109.46782 * 329.98371 * 1 2 3 32 32 H 0.96995 * 120.00549 * 5.27642 * 6 4 3 33 33 H 1.08002 * 120.16578 * 359.96069 * 8 7 6 34 34 H 1.08994 * 109.46742 * 270.02009 * 10 9 8 35 35 H 1.08998 * 109.46554 * 30.01842 * 10 9 8 36 36 H 1.08995 * 109.47150 * 150.01584 * 10 9 8 37 37 H 1.08003 * 125.69332 * 179.97438 * 13 12 11 38 38 H 1.07997 * 126.40661 * 180.26301 * 14 13 12 39 39 H 1.07994 * 119.73732 * 0.02562 * 16 7 6 40 40 H 1.07999 * 125.98425 * 179.74263 * 17 3 2 41 41 H 1.09000 * 109.47033 * 210.00170 * 20 19 2 42 42 H 1.09002 * 109.47091 * 330.00529 * 20 19 2 43 43 H 0.96995 * 120.00737 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1126 0.0000 4 6 1.8860 2.5201 0.0005 5 8 0.6996 2.7877 0.0015 6 7 2.8002 3.5105 -0.0001 7 6 2.3873 4.8459 0.1121 8 6 1.2504 5.1682 0.8801 9 6 0.8552 6.4645 0.9857 10 6 -0.3588 6.8247 1.8029 11 6 1.5902 7.4689 0.3245 12 7 1.4377 8.7848 0.2536 13 6 2.4066 9.2974 -0.5079 14 6 3.1981 8.2890 -0.9358 15 7 2.6917 7.1293 -0.4158 16 6 3.0827 5.8239 -0.5179 17 6 3.6592 0.6497 -0.0066 18 7 3.6341 -0.6545 -0.0006 19 7 2.3018 -1.0823 -0.0005 20 6 1.8501 -2.4760 -0.0002 21 6 1.6945 -2.9538 -1.4209 22 1 1.9100 -2.2860 -2.2419 23 6 1.2760 -4.2431 -1.6727 24 7 1.0131 -5.0562 -0.6730 25 14 1.0838 -4.8357 -3.4338 26 1 2.3646 -5.4248 -3.9004 27 1 0.0142 -5.8640 -3.4961 28 1 0.7199 -3.6893 -4.3048 29 1 -0.3633 0.0003 -1.0277 30 1 -0.3634 -0.8901 0.5135 31 1 -0.3633 0.8898 0.5141 32 1 3.7437 3.2996 -0.0781 33 1 0.6958 4.3891 1.3821 34 1 -1.2447 6.7980 1.1685 35 1 -0.4735 6.1096 2.6175 36 1 -0.2360 7.8268 2.2136 37 1 2.5360 10.3435 -0.7436 38 1 4.0701 8.3818 -1.5661 39 1 3.9529 5.5695 -1.1047 40 1 4.5450 1.2675 -0.0123 41 1 2.5851 -3.0959 0.5132 42 1 0.8918 -2.5472 0.5142 43 1 0.7191 -5.9634 -0.8500 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891176303.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:27 Heat of formation + Delta-G solvation = 105.649693 kcal Electronic energy + Delta-G solvation = -27857.749188 eV Core-core repulsion = 23905.022387 eV Total energy + Delta-G solvation = -3952.726800 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.74711 -42.39923 -40.82171 -38.31723 -35.95880 -35.73884 -35.20699 -33.83322 -32.81977 -30.96705 -30.04776 -29.05955 -28.28228 -27.99837 -25.50372 -24.31885 -23.97727 -22.88371 -22.16597 -21.33493 -20.72907 -19.12879 -18.85733 -18.42370 -18.07946 -17.24738 -16.99145 -16.70341 -16.45030 -16.20307 -15.87634 -15.47537 -15.34010 -14.95418 -14.81707 -14.55788 -14.33656 -14.19315 -14.13881 -13.98523 -13.69456 -13.58454 -13.21569 -13.09614 -12.98831 -12.87459 -12.71757 -12.70634 -12.31653 -11.86834 -11.79029 -11.75589 -11.11918 -11.01256 -10.78531 -10.76517 -10.29179 -9.62003 -9.28111 -8.65760 -8.38506 -6.54608 -0.27760 0.21050 0.67031 1.28286 1.37034 1.38013 1.38916 1.48937 1.70176 1.94024 2.24599 2.32308 2.36534 2.60293 2.94077 3.29184 3.52730 3.62219 3.71403 3.79757 3.96758 3.98697 4.13723 4.22329 4.39433 4.50200 4.54957 4.62234 4.63726 4.76479 4.77164 4.81840 4.89158 4.97860 5.04788 5.08877 5.16259 5.23402 5.31629 5.48569 5.57277 5.64701 5.74188 5.74868 6.01058 6.10931 6.38101 6.54182 6.82064 6.91504 7.13923 7.16650 8.69295 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023903 B = 0.002168 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.135994 B =12909.915457 C =13156.505654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.153 3.847 3 C -0.330 4.330 4 C 0.613 3.387 5 O -0.554 6.554 6 N -0.649 5.649 7 C 0.145 3.855 8 C -0.111 4.111 9 C -0.046 4.046 10 C -0.099 4.099 11 C 0.186 3.814 12 N -0.523 5.523 13 C 0.009 3.991 14 C -0.089 4.089 15 N -0.351 5.351 16 C 0.007 3.993 17 C 0.083 3.917 18 N -0.335 5.335 19 N -0.337 5.337 20 C 0.266 3.734 21 C -0.554 4.554 22 H 0.053 0.947 23 C 0.024 3.976 24 N -0.916 5.916 25 Si 0.970 3.030 26 H -0.273 1.273 27 H -0.273 1.273 28 H -0.269 1.269 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.430 0.570 33 H 0.146 0.854 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.207 0.793 38 H 0.220 0.780 39 H 0.203 0.797 40 H 0.232 0.768 41 H 0.032 0.968 42 H 0.052 0.948 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.270 23.597 1.406 24.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.016 3.984 3 C -0.345 4.345 4 C 0.405 3.595 5 O -0.433 6.433 6 N -0.296 5.296 7 C 0.048 3.952 8 C -0.136 4.136 9 C -0.049 4.049 10 C -0.156 4.156 11 C -0.057 4.057 12 N -0.243 5.243 13 C -0.143 4.143 14 C -0.221 4.221 15 N -0.022 5.022 16 C -0.118 4.118 17 C -0.104 4.104 18 N -0.155 5.155 19 N -0.114 5.114 20 C 0.148 3.852 21 C -0.592 4.592 22 H 0.071 0.929 23 C -0.178 4.178 24 N -0.554 5.554 25 Si 0.794 3.206 26 H -0.198 1.198 27 H -0.198 1.198 28 H -0.194 1.194 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.124 0.876 32 H 0.270 0.730 33 H 0.163 0.837 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.223 0.777 38 H 0.237 0.763 39 H 0.219 0.781 40 H 0.248 0.752 41 H 0.050 0.950 42 H 0.069 0.931 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.511 22.710 1.831 23.226 hybrid contribution 0.532 -0.727 -1.180 1.484 sum 5.044 21.983 0.651 22.564 Atomic orbital electron populations 1.20595 0.85826 1.04278 1.04027 1.21971 0.95939 0.86703 0.93760 1.19665 0.93448 0.92061 1.29364 1.17134 0.84807 0.83622 0.73950 1.90731 1.17613 1.84165 1.50765 1.42872 1.11449 1.01836 1.73410 1.16858 0.96421 0.84315 0.97647 1.21060 0.97170 0.95845 0.99531 1.19084 0.97844 0.89670 0.98307 1.20649 0.93158 1.03000 0.98748 1.20963 0.91474 0.92423 1.00861 1.70687 1.26555 1.04257 1.22849 1.23096 0.92245 1.01261 0.97699 1.23333 1.06577 0.82300 1.09856 1.42661 1.20524 1.06638 1.32401 1.21301 1.05322 0.80440 1.04731 1.24598 0.97595 0.91613 0.96567 1.77131 0.98240 1.14536 1.25556 1.49124 1.03447 1.07782 1.51010 1.19383 0.95382 0.72338 0.98123 1.21380 1.47831 0.98427 0.91582 0.92905 1.25713 0.93900 0.96037 1.02130 1.69987 1.44851 1.07587 1.32986 0.85369 0.78293 0.78220 0.78736 1.19837 1.19782 1.19399 0.89860 0.91046 0.87631 0.73049 0.83658 0.90344 0.89587 0.90758 0.77672 0.76323 0.78058 0.75166 0.94979 0.93062 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.01 9.57 71.24 0.68 -2.33 16 2 C 0.15 5.72 7.01 42.14 0.30 6.02 16 3 C -0.33 -10.23 6.13 -20.15 -0.12 -10.35 16 4 C 0.61 16.60 7.57 86.66 0.66 17.26 16 5 O -0.55 -17.90 12.51 -4.08 -0.05 -17.95 16 6 N -0.65 -11.96 5.33 -307.02 -1.64 -13.60 16 7 C 0.15 2.90 6.24 37.83 0.24 3.13 16 8 C -0.11 -2.62 8.30 22.39 0.19 -2.43 16 9 C -0.05 -1.09 5.90 -19.74 -0.12 -1.20 16 10 C -0.10 -1.92 10.02 71.24 0.71 -1.21 16 11 C 0.19 4.62 7.51 134.11 1.01 5.62 16 12 N -0.52 -13.23 11.31 -194.34 -2.20 -15.43 16 13 C 0.01 0.15 11.83 83.73 0.99 1.14 16 14 C -0.09 -1.34 11.76 83.20 0.98 -0.36 16 15 N -0.35 -6.92 2.95 -351.52 -1.04 -7.95 16 16 C 0.01 0.11 10.84 83.32 0.90 1.02 16 17 C 0.08 2.38 11.51 85.65 0.99 3.36 16 18 N -0.34 -13.23 12.50 -56.27 -0.70 -13.93 16 19 N -0.34 -14.55 3.56 -336.67 -1.20 -15.75 16 20 C 0.27 13.18 5.97 85.63 0.51 13.69 16 21 C -0.55 -29.49 9.39 25.60 0.24 -29.25 16 22 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 23 C 0.02 1.25 5.46 84.65 0.46 1.71 16 24 N -0.92 -50.14 13.29 21.45 0.28 -49.86 16 25 Si 0.97 41.64 29.54 68.60 2.03 43.66 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 28 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 29 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 30 H 0.07 2.42 7.05 -2.39 -0.02 2.40 16 31 H 0.11 3.27 6.50 -2.39 -0.02 3.26 16 32 H 0.43 4.62 7.78 -92.71 -0.72 3.90 16 33 H 0.15 3.69 6.44 -2.91 -0.02 3.67 16 34 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.09 1.40 8.08 -2.39 -0.02 1.38 16 36 H 0.07 1.46 8.10 -2.39 -0.02 1.44 16 37 H 0.21 2.20 8.06 -2.91 -0.02 2.18 16 38 H 0.22 1.32 8.06 -2.91 -0.02 1.30 16 39 H 0.20 1.54 8.06 -2.91 -0.02 1.52 16 40 H 0.23 3.60 7.51 -2.91 -0.02 3.58 16 41 H 0.03 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.05 2.54 7.02 -2.39 -0.02 2.53 16 43 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -72.19 370.48 4.44 -67.75 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.35 Total: 17.24 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 8.61 Total: 5.81 kcal Atomic # 7 Polarization: -110.02 SS G_CDS: -6.49 Total: -116.51 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.05 Total: -17.95 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.66 kcal Total: -72.19 4.44 -67.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891176303.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.398 kcal (2) G-P(sol) polarization free energy of solvation -72.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds