Wall clock time and date at job start Sat Apr 11 2020 05:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42908 * 113.99859 * 2 1 4 4 C 1.53001 * 109.46846 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47358 * 64.99836 * 4 3 2 6 6 C 1.36945 * 120.00320 * 263.77805 * 5 4 3 7 7 H 1.08003 * 120.00120 * 135.83687 * 6 5 4 8 8 C 1.38972 * 119.99809 * 315.84320 * 6 5 4 9 9 N 1.31414 * 120.00043 * 348.66248 * 8 6 5 10 10 Si 1.86803 * 119.99965 * 168.66642 * 8 6 5 11 11 H 1.48503 * 109.47140 * 89.99541 * 10 8 6 12 12 H 1.48499 * 109.47083 * 209.99685 * 10 8 6 13 13 H 1.48497 * 109.46852 * 329.99776 * 10 8 6 14 14 C 1.34777 * 120.00053 * 83.77597 * 5 4 3 15 15 O 1.21691 * 120.00075 * 3.48235 * 14 5 4 16 16 C 1.47063 * 120.00489 * 183.47625 * 14 5 4 17 17 C 1.35170 * 122.49687 * 176.52452 * 16 14 5 18 18 S 1.76182 * 108.25426 * 179.75899 * 17 16 14 19 19 C 1.76058 * 90.17864 * 0.24270 * 18 17 16 20 20 N 1.38434 * 125.17324 * 180.02562 * 19 18 17 21 21 C 1.46846 * 110.99833 * 124.23472 * 20 19 18 22 22 C 1.53044 * 109.52263 * 174.15733 * 21 20 19 23 23 C 1.53125 * 109.27717 * 59.17733 * 22 21 20 24 24 C 1.53120 * 109.15875 * 302.34635 * 23 22 21 25 25 C 1.46842 * 111.00024 * 0.02562 * 20 19 18 26 26 N 1.29448 * 109.64376 * 359.97438 * 19 18 17 27 27 H 1.09008 * 109.47189 * 59.99919 * 1 2 3 28 28 H 1.08996 * 109.47190 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47650 * 300.00447 * 1 2 3 30 30 H 1.09001 * 109.46842 * 59.99625 * 3 2 1 31 31 H 1.09004 * 109.46913 * 299.99948 * 3 2 1 32 32 H 1.09001 * 109.47084 * 304.99531 * 4 3 2 33 33 H 1.09003 * 109.46575 * 184.99948 * 4 3 2 34 34 H 0.97001 * 119.99879 * 179.97438 * 9 8 6 35 35 H 1.08008 * 125.87432 * 0.02562 * 17 16 14 36 36 H 1.09000 * 109.46092 * 294.17092 * 21 20 19 37 37 H 1.08995 * 109.46633 * 54.14213 * 21 20 19 38 38 H 1.09003 * 109.50073 * 299.23907 * 22 21 20 39 39 H 1.08994 * 109.50038 * 179.12019 * 22 21 20 40 40 H 1.08998 * 109.51822 * 182.43909 * 23 22 21 41 41 H 1.08998 * 109.57409 * 62.28169 * 23 22 21 42 42 H 1.08997 * 109.50708 * 297.71426 * 24 23 22 43 43 H 1.09003 * 109.53064 * 177.61434 * 24 23 22 44 44 H 1.08996 * 109.46547 * 305.85292 * 25 20 19 45 45 H 1.08999 * 109.46532 * 65.84267 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.2206 -0.7827 -1.2984 7 1 3.8601 -1.3677 -2.1317 8 6 4.9318 -1.3967 -0.2745 9 7 5.5595 -0.6660 0.6194 10 14 4.9957 -3.2606 -0.1689 11 1 6.1608 -3.7606 -0.9422 12 1 5.1312 -3.6716 1.2516 13 1 3.7460 -3.8314 -0.7323 14 6 4.1426 1.3183 -2.3553 15 8 3.9874 2.5239 -2.2977 16 6 4.5113 0.6846 -3.6301 17 6 4.6235 1.3824 -4.7823 18 16 5.0850 0.2634 -6.0625 19 6 5.0775 -1.0672 -4.9096 20 7 5.3711 -2.3859 -5.2119 21 6 6.4570 -2.8913 -4.3625 22 6 6.6554 -4.3865 -4.6215 23 6 6.9948 -4.6030 -6.0989 24 6 5.8707 -4.0246 -6.9628 25 6 5.6952 -2.5398 -6.6358 26 7 4.7568 -0.6246 -3.7362 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.8508 0.5686 0.8428 33 1 3.9784 2.1766 0.0902 34 1 6.0556 -1.0946 1.3344 35 1 4.4625 2.4442 -4.8975 36 1 7.3784 -2.3571 -4.5947 37 1 6.2012 -2.7351 -3.3145 38 1 5.7387 -4.9230 -4.3763 39 1 7.4718 -4.7579 -4.0023 40 1 7.0943 -5.6702 -6.2971 41 1 7.9321 -4.0995 -6.3358 42 1 4.9417 -4.5553 -6.7544 43 1 6.1259 -4.1375 -8.0164 44 1 4.8860 -2.1284 -7.2391 45 1 6.6203 -2.0076 -6.8573 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909563220.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:10 Heat of formation + Delta-G solvation = -29.274581 kcal Electronic energy + Delta-G solvation = -28646.954373 eV Core-core repulsion = 24791.528017 eV Total energy + Delta-G solvation = -3855.426356 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.36709 -40.42367 -39.06829 -38.33740 -36.63115 -34.61358 -33.46101 -31.98792 -31.17253 -30.35600 -27.35319 -26.81546 -26.37314 -25.20110 -24.34783 -23.27492 -21.84566 -20.86475 -20.49257 -19.66662 -18.46766 -17.91078 -17.26218 -17.14357 -16.58464 -16.34101 -16.24202 -16.00189 -15.93115 -15.69411 -15.51443 -15.22123 -14.80283 -14.64471 -14.36887 -14.04095 -13.95975 -13.61805 -13.36074 -13.22762 -13.01107 -12.95694 -12.74465 -12.53721 -12.45719 -12.23519 -12.08993 -11.84123 -11.74278 -11.51821 -11.42593 -11.09012 -11.03631 -10.68943 -10.51485 -10.16157 -10.04972 -9.27933 -9.04500 -8.17193 -5.88198 -0.35426 0.21958 0.59095 1.22312 1.44437 1.48841 1.58396 2.25397 2.39346 2.63617 2.91713 3.04957 3.25784 3.65600 3.82685 3.89846 3.99995 4.16032 4.22194 4.24972 4.28327 4.37498 4.47782 4.50120 4.51468 4.52752 4.58191 4.61860 4.70945 4.78303 4.81865 4.85546 4.87020 4.99432 5.11068 5.19451 5.27737 5.33931 5.44431 5.65878 5.69671 5.82322 6.04604 6.38884 6.63727 6.85907 7.26094 7.57038 7.98001 8.88229 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011155 B = 0.004988 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.431721 B = 5611.626816 C = 7033.414445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.064 3.936 4 C 0.116 3.884 5 N -0.415 5.415 6 C -0.284 4.284 7 H 0.107 0.893 8 C -0.001 4.001 9 N -0.911 5.911 10 Si 0.972 3.028 11 H -0.265 1.265 12 H -0.286 1.286 13 H -0.270 1.270 14 C 0.510 3.490 15 O -0.631 6.631 16 C 0.047 3.953 17 C -0.217 4.217 18 S 0.096 5.904 19 C 0.240 3.760 20 N -0.443 5.443 21 C 0.060 3.940 22 C -0.117 4.117 23 C -0.118 4.118 24 C -0.108 4.108 25 C 0.039 3.961 26 N -0.457 5.457 27 H 0.037 0.963 28 H 0.093 0.907 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.031 0.969 32 H 0.096 0.904 33 H 0.060 0.940 34 H 0.265 0.735 35 H 0.187 0.813 36 H 0.049 0.951 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.104 0.896 44 H 0.092 0.908 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.144 -7.632 -13.932 15.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.318 6.318 3 C -0.013 4.013 4 C -0.008 4.008 5 N -0.129 5.129 6 C -0.413 4.413 7 H 0.124 0.876 8 C -0.201 4.201 9 N -0.551 5.551 10 Si 0.797 3.203 11 H -0.190 1.190 12 H -0.211 1.211 13 H -0.194 1.194 14 C 0.298 3.702 15 O -0.521 6.521 16 C -0.085 4.085 17 C -0.359 4.359 18 S 0.345 5.655 19 C -0.132 4.132 20 N -0.164 5.164 21 C -0.068 4.068 22 C -0.155 4.155 23 C -0.155 4.155 24 C -0.145 4.145 25 C -0.087 4.087 26 N -0.177 5.177 27 H 0.056 0.944 28 H 0.112 0.888 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.049 0.951 32 H 0.114 0.886 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.204 0.796 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.123 0.877 44 H 0.110 0.890 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.052 -7.881 -14.226 16.263 hybrid contribution 0.106 0.757 1.420 1.613 sum 0.159 -7.124 -12.806 14.655 Atomic orbital electron populations 1.22884 0.80534 1.03343 1.00283 1.88071 1.20595 1.27814 1.95323 1.22822 0.94145 0.84661 0.99687 1.21446 0.91520 0.97918 0.89908 1.43484 1.53805 1.08260 1.07328 1.19980 1.31323 0.81979 1.08046 0.87580 1.26088 0.94429 1.03378 0.96198 1.69972 1.31884 1.37060 1.16159 0.85257 0.79008 0.79092 0.76986 1.18982 1.21138 1.19448 1.17968 0.81968 0.85482 0.84822 1.90583 1.60310 1.14578 1.86600 1.20074 1.04971 0.88231 0.95190 1.26980 1.09770 1.05043 0.94132 1.84195 1.67669 0.99743 1.13881 1.26893 1.01383 0.93675 0.91243 1.58350 1.40670 1.09236 1.08188 1.22315 0.90198 0.97585 0.96674 1.21675 1.02587 0.92444 0.98770 1.21627 0.98521 1.02551 0.92822 1.21605 0.99901 0.91736 1.01301 1.22639 1.01704 1.00793 0.83603 1.67342 1.16938 1.12748 1.20639 0.94444 0.88848 0.92643 0.90901 0.95100 0.88597 0.92178 0.92528 0.79603 0.93257 0.92089 0.91432 0.90018 0.89309 0.91108 0.91005 0.87730 0.88964 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.01 113.37 1.25 2.07 16 2 O -0.40 -17.64 10.47 -148.98 -1.56 -19.20 16 3 C 0.06 2.80 6.23 71.98 0.45 3.25 16 4 C 0.12 5.95 5.25 86.38 0.45 6.40 16 5 N -0.41 -22.90 2.44 -639.63 -1.56 -24.46 16 6 C -0.28 -15.77 7.54 84.07 0.63 -15.13 16 7 H 0.11 6.04 5.82 -2.91 -0.02 6.02 16 8 C 0.00 -0.06 5.09 84.93 0.43 0.37 16 9 N -0.91 -51.74 11.43 21.67 0.25 -51.49 16 10 Si 0.97 43.85 29.57 68.60 2.03 45.87 16 11 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 12 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 13 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 14 C 0.51 27.80 7.56 86.56 0.65 28.45 16 15 O -0.63 -35.63 16.33 -4.32 -0.07 -35.70 16 16 C 0.05 2.25 6.52 40.48 0.26 2.52 16 17 C -0.22 -8.40 10.84 67.11 0.73 -7.68 16 18 S 0.10 2.82 21.49 -56.49 -1.21 1.60 16 19 C 0.24 8.67 6.96 179.45 1.25 9.92 16 20 N -0.44 -13.31 4.72 -704.18 -3.32 -16.63 16 21 C 0.06 1.80 5.38 86.33 0.46 2.26 16 22 C -0.12 -2.59 6.09 30.65 0.19 -2.41 16 23 C -0.12 -1.77 6.00 30.68 0.18 -1.59 16 24 C -0.11 -1.58 6.09 30.65 0.19 -1.40 16 25 C 0.04 0.79 4.51 86.33 0.39 1.18 16 26 N -0.46 -20.85 6.49 -187.44 -1.22 -22.06 16 27 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 28 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.10 5.28 5.76 -2.39 -0.01 5.26 16 33 H 0.06 3.13 7.57 -2.39 -0.02 3.11 16 34 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 35 H 0.19 6.73 8.01 -2.91 -0.02 6.70 16 36 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.06 2.38 7.82 -2.39 -0.02 2.36 16 38 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.09 1.73 7.48 -2.39 -0.02 1.72 16 45 H 0.06 1.17 8.04 -2.39 -0.02 1.15 16 Total: -1.00 -71.84 375.84 1.84 -70.00 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 0.99 Total: 23.87 kcal Atomic # 6 Polarization: 20.69 SS G_CDS: 7.52 Total: 28.21 kcal Atomic # 7 Polarization: -108.79 SS G_CDS: -5.85 Total: -114.64 kcal Atomic # 8 Polarization: -53.27 SS G_CDS: -1.63 Total: -54.90 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: 2.82 SS G_CDS: -1.21 Total: 1.60 kcal Total: -71.84 1.84 -70.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909563220.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.721 kcal (2) G-P(sol) polarization free energy of solvation -71.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds