Wall clock time and date at job start Sat Apr 11 2020 05:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99797 * 2 1 4 4 H 1.48493 * 109.47126 * 269.99446 * 3 2 1 5 5 H 1.48500 * 109.47126 * 29.99637 * 3 2 1 6 6 H 1.48506 * 109.46802 * 149.99795 * 3 2 1 7 7 C 1.37877 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99558 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00320 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.47174 * 299.99819 * 9 7 2 11 11 N 1.46506 * 109.47041 * 179.97438 * 9 7 2 12 12 C 1.34779 * 119.99811 * 154.99859 * 11 9 7 13 13 O 1.21284 * 119.99801 * 0.02562 * 12 11 9 14 14 C 1.50697 * 120.00156 * 180.02562 * 12 11 9 15 15 C 1.52997 * 109.47184 * 180.02562 * 14 12 11 16 16 C 1.53007 * 109.46626 * 180.02562 * 15 14 12 17 17 O 1.42905 * 109.46384 * 180.02562 * 16 15 14 18 18 C 1.42908 * 113.99577 * 179.97438 * 17 16 15 19 19 C 1.53175 * 109.54043 * 90.44155 * 18 17 16 20 20 C 1.53092 * 109.16179 * 176.84918 * 19 18 17 21 21 O 1.42910 * 109.41107 * 302.39040 * 20 19 18 22 22 C 1.42900 * 114.09727 * 61.16189 * 21 20 19 23 23 C 1.53090 * 109.41229 * 298.83586 * 22 21 20 24 24 C 1.52997 * 109.47105 * 59.99880 * 9 7 2 25 25 F 1.39899 * 109.47189 * 180.02562 * 24 9 7 26 26 F 1.39903 * 109.47180 * 299.99745 * 24 9 7 27 27 F 1.39903 * 109.47617 * 60.00040 * 24 9 7 28 28 H 0.96999 * 120.00047 * 0.02562 * 1 2 3 29 29 H 0.97000 * 120.00165 * 335.00328 * 11 9 7 30 30 H 1.08997 * 109.46745 * 59.99800 * 14 12 11 31 31 H 1.09005 * 109.46845 * 300.00394 * 14 12 11 32 32 H 1.08990 * 109.47354 * 59.99946 * 15 14 12 33 33 H 1.08999 * 109.46847 * 299.99264 * 15 14 12 34 34 H 1.08990 * 109.47598 * 59.99728 * 16 15 14 35 35 H 1.08999 * 109.46607 * 299.99045 * 16 15 14 36 36 H 1.08997 * 109.61229 * 330.22369 * 18 17 16 37 37 H 1.09006 * 109.52647 * 296.75219 * 19 18 17 38 38 H 1.08998 * 109.52537 * 56.94111 * 19 18 17 39 39 H 1.08998 * 109.48147 * 182.40843 * 20 19 18 40 40 H 1.08997 * 109.48550 * 62.37144 * 20 19 18 41 41 H 1.09003 * 109.47953 * 178.86010 * 22 21 20 42 42 H 1.08995 * 109.49265 * 58.82602 * 22 21 20 43 43 H 1.09001 * 109.52724 * 297.70937 * 23 22 21 44 44 H 1.09000 * 109.52338 * 177.51272 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 2.2031 -3.6127 0.0005 12 6 1.8369 -4.8123 0.4939 13 8 0.7191 -4.9701 0.9373 14 6 2.8164 -5.9576 0.4944 15 6 2.1538 -7.1950 1.1034 16 6 3.1486 -8.3576 1.1045 17 8 2.5295 -9.5134 1.6727 18 6 3.3777 -10.6626 1.7208 19 6 4.1358 -10.6845 3.0516 20 6 4.9813 -11.9585 3.1274 21 8 4.1336 -13.1002 2.9859 22 6 3.4352 -13.1577 1.7405 23 6 2.5276 -11.9319 1.6091 24 6 0.3719 -2.5805 -1.2490 25 9 -0.3281 -3.7918 -1.2487 26 9 -0.5373 -1.5172 -1.2495 27 9 1.1765 -2.5066 -2.3911 28 1 -0.4850 0.8400 -0.0004 29 1 3.0969 -3.4866 -0.3544 30 1 3.6920 -5.6865 1.0841 31 1 3.1210 -6.1756 -0.5292 32 1 1.2784 -7.4659 0.5133 33 1 1.8490 -6.9772 2.1270 34 1 4.0238 -8.0864 1.6947 35 1 3.4537 -8.5755 0.0810 36 1 4.0896 -10.6266 0.8962 37 1 4.7857 -9.8117 3.1151 38 1 3.4237 -10.6703 3.8768 39 1 5.4899 -12.0005 4.0905 40 1 5.7200 -11.9527 2.3260 41 1 2.8300 -14.0636 1.7046 42 1 4.1536 -13.1677 0.9209 43 1 1.7830 -11.9428 2.4051 44 1 2.0274 -11.9511 0.6408 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928798820.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:18 Heat of formation + Delta-G solvation = -285.319391 kcal Electronic energy + Delta-G solvation = -29981.570029 eV Core-core repulsion = 25098.138375 eV Total energy + Delta-G solvation = -4883.431654 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.36447 -46.02192 -45.62546 -39.96038 -39.09924 -37.77928 -34.80949 -33.88748 -32.61251 -32.20911 -31.53965 -28.84313 -26.66006 -24.63171 -24.46966 -23.99176 -22.27888 -21.18267 -20.61588 -19.75787 -17.68589 -17.19727 -16.84636 -16.68311 -16.60880 -16.49517 -16.13864 -16.01804 -15.67064 -15.23981 -14.96294 -14.81067 -14.33988 -14.22158 -13.80823 -13.52616 -12.99435 -12.95531 -12.85163 -12.57260 -12.48928 -12.42210 -12.30004 -12.03739 -11.98287 -11.83605 -11.76112 -11.69640 -11.47541 -11.16866 -11.02600 -10.91164 -10.85387 -10.77854 -10.69650 -10.42669 -10.07861 -9.69931 -9.68096 -9.22880 -8.75336 -8.28278 -6.25983 -4.50260 3.15982 3.20556 3.21043 3.24107 3.25887 3.48237 3.88580 4.19259 4.34493 4.40448 4.54614 4.55522 4.68237 4.78348 4.90563 4.92512 4.93943 4.97325 5.03004 5.12334 5.24229 5.25752 5.37848 5.40288 5.45296 5.51063 5.60771 5.69953 5.75262 5.83521 5.85612 5.86581 6.15683 6.20690 6.34251 6.75724 6.92074 7.04400 7.15666 7.44597 7.60750 8.30345 8.47341 8.87756 9.17789 10.65642 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.026286 B = 0.001983 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.952247 B =14113.759029 C =14725.065359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.064 3.936 3 Si 0.916 3.084 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.552 4.552 8 H 0.077 0.923 9 C 0.244 3.756 10 H 0.085 0.915 11 N -0.713 5.713 12 C 0.504 3.496 13 O -0.535 6.535 14 C -0.137 4.137 15 C -0.102 4.102 16 C 0.063 3.937 17 O -0.376 6.376 18 C 0.089 3.911 19 C -0.180 4.180 20 C 0.064 3.936 21 O -0.383 6.383 22 C 0.064 3.936 23 C -0.155 4.155 24 C 0.417 3.583 25 F -0.218 7.218 26 F -0.137 7.137 27 F -0.210 7.210 28 H 0.268 0.732 29 H 0.398 0.602 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.051 0.949 41 H 0.099 0.901 42 H 0.051 0.949 43 H 0.082 0.918 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.653 -19.170 1.689 21.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.145 4.145 3 Si 0.742 3.258 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.589 4.589 8 H 0.095 0.905 9 C 0.138 3.862 10 H 0.102 0.898 11 N -0.363 5.363 12 C 0.289 3.711 13 O -0.412 6.412 14 C -0.177 4.177 15 C -0.140 4.140 16 C -0.014 4.014 17 O -0.295 6.295 18 C 0.031 3.969 19 C -0.218 4.218 20 C -0.013 4.013 21 O -0.302 6.302 22 C -0.013 4.013 23 C -0.193 4.193 24 C 0.360 3.640 25 F -0.200 7.200 26 F -0.118 7.118 27 F -0.192 7.192 28 H 0.079 0.921 29 H 0.232 0.768 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.115 0.885 40 H 0.069 0.931 41 H 0.118 0.882 42 H 0.070 0.930 43 H 0.101 0.899 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.414 -19.281 2.205 21.569 hybrid contribution 0.970 1.287 -0.881 1.837 sum 10.384 -17.993 1.323 20.817 Atomic orbital electron populations 1.70401 1.05866 1.27394 1.43580 1.25100 0.95170 1.00173 0.94057 0.86206 0.79525 0.81640 0.78426 1.20219 1.20785 1.19496 1.20873 0.93741 0.88136 1.56184 0.90480 1.19714 0.88812 0.85969 0.91667 0.89763 1.46099 1.17147 1.10737 1.62333 1.20513 0.88602 0.83896 0.78057 1.90713 1.21439 1.83002 1.46018 1.21529 0.98980 0.94037 1.03151 1.21202 0.98255 0.91146 1.03417 1.22601 0.95989 0.85981 0.96792 1.87968 1.39434 1.19210 1.82933 1.22056 0.92169 0.86404 0.96282 1.22749 1.00537 0.98886 0.99623 1.22564 0.91812 0.84650 1.02299 1.87947 1.60703 1.44194 1.37320 1.22586 0.94385 0.98080 0.86232 1.22308 0.99459 0.93328 1.04171 1.23148 0.80885 0.72794 0.87125 1.93069 1.81472 1.48457 1.96973 1.93404 1.68395 1.53808 1.96201 1.92985 1.74411 1.96192 1.55588 0.92094 0.76793 0.89030 0.89135 0.90230 0.90242 0.93367 0.93341 0.92167 0.90572 0.89933 0.88489 0.93118 0.88247 0.93043 0.89931 0.90057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.96 9.50 55.43 0.53 -22.44 16 2 C 0.06 1.65 5.20 -17.82 -0.09 1.56 16 3 Si 0.92 19.91 29.54 -169.99 -5.02 14.89 16 4 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 7 C -0.55 -13.92 8.46 -34.44 -0.29 -14.21 16 8 H 0.08 1.82 7.74 -52.48 -0.41 1.41 16 9 C 0.24 6.00 2.21 -69.08 -0.15 5.85 16 10 H 0.08 2.34 7.58 -51.93 -0.39 1.94 16 11 N -0.71 -14.10 4.98 -54.93 -0.27 -14.37 16 12 C 0.50 9.47 7.36 -10.99 -0.08 9.39 16 13 O -0.54 -12.33 14.55 5.55 0.08 -12.25 16 14 C -0.14 -1.74 5.70 -27.89 -0.16 -1.90 16 15 C -0.10 -1.33 4.87 -26.73 -0.13 -1.46 16 16 C 0.06 0.65 5.76 37.16 0.21 0.86 16 17 O -0.38 -4.40 10.00 -35.23 -0.35 -4.75 16 18 C 0.09 0.79 2.70 -26.55 -0.07 0.72 16 19 C -0.18 -1.44 5.76 -26.59 -0.15 -1.60 16 20 C 0.06 0.45 6.84 37.21 0.25 0.70 16 21 O -0.38 -3.41 10.77 -35.23 -0.38 -3.79 16 22 C 0.06 0.44 6.84 37.20 0.25 0.70 16 23 C -0.15 -1.25 5.79 -26.59 -0.15 -1.40 16 24 C 0.42 10.66 2.81 37.16 0.10 10.77 16 25 F -0.22 -5.55 15.68 2.25 0.04 -5.51 16 26 F -0.14 -3.80 12.91 2.25 0.03 -3.77 16 27 F -0.21 -5.14 16.94 2.25 0.04 -5.10 16 28 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.40 6.63 8.54 -40.82 -0.35 6.28 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 33 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 34 H 0.05 0.43 7.99 -51.93 -0.42 0.01 16 35 H 0.05 0.44 8.09 -51.93 -0.42 0.02 16 36 H 0.06 0.46 7.79 -51.93 -0.40 0.06 16 37 H 0.08 0.55 8.00 -51.93 -0.42 0.13 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 370.01 15.07 5.58 5.58 Total: -1.00 -31.50 370.01 -6.78 -38.29 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -6.58 Total: 3.25 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: -0.46 Total: 9.98 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.25 Total: -36.81 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.65 Total: -20.79 kcal Atomic # 9 Polarization: -14.49 SS G_CDS: 0.10 Total: -14.38 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.50 -6.78 -38.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928798820.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -247.034 kcal (2) G-P(sol) polarization free energy of solvation -31.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -278.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -285.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds