Wall clock time and date at job start Sat Apr 11 2020 05:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99797 * 2 1 4 4 H 1.48493 * 109.47126 * 269.99446 * 3 2 1 5 5 H 1.48500 * 109.47126 * 29.99637 * 3 2 1 6 6 H 1.48506 * 109.46802 * 149.99795 * 3 2 1 7 7 C 1.37877 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99558 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00320 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.47174 * 299.99819 * 9 7 2 11 11 N 1.46506 * 109.47041 * 179.97438 * 9 7 2 12 12 C 1.34779 * 119.99811 * 154.99859 * 11 9 7 13 13 O 1.21284 * 119.99801 * 0.02562 * 12 11 9 14 14 C 1.50697 * 120.00156 * 180.02562 * 12 11 9 15 15 C 1.52997 * 109.47184 * 180.02562 * 14 12 11 16 16 C 1.53007 * 109.46626 * 180.02562 * 15 14 12 17 17 O 1.42905 * 109.46384 * 180.02562 * 16 15 14 18 18 C 1.42908 * 113.99577 * 179.97438 * 17 16 15 19 19 C 1.53175 * 109.54043 * 90.44155 * 18 17 16 20 20 C 1.53092 * 109.16179 * 176.84918 * 19 18 17 21 21 O 1.42910 * 109.41107 * 302.39040 * 20 19 18 22 22 C 1.42900 * 114.09727 * 61.16189 * 21 20 19 23 23 C 1.53090 * 109.41229 * 298.83586 * 22 21 20 24 24 C 1.52997 * 109.47105 * 59.99880 * 9 7 2 25 25 F 1.39899 * 109.47189 * 180.02562 * 24 9 7 26 26 F 1.39903 * 109.47180 * 299.99745 * 24 9 7 27 27 F 1.39903 * 109.47617 * 60.00040 * 24 9 7 28 28 H 0.96999 * 120.00047 * 0.02562 * 1 2 3 29 29 H 0.97000 * 120.00165 * 335.00328 * 11 9 7 30 30 H 1.08997 * 109.46745 * 59.99800 * 14 12 11 31 31 H 1.09005 * 109.46845 * 300.00394 * 14 12 11 32 32 H 1.08990 * 109.47354 * 59.99946 * 15 14 12 33 33 H 1.08999 * 109.46847 * 299.99264 * 15 14 12 34 34 H 1.08990 * 109.47598 * 59.99728 * 16 15 14 35 35 H 1.08999 * 109.46607 * 299.99045 * 16 15 14 36 36 H 1.08997 * 109.61229 * 330.22369 * 18 17 16 37 37 H 1.09006 * 109.52647 * 296.75219 * 19 18 17 38 38 H 1.08998 * 109.52537 * 56.94111 * 19 18 17 39 39 H 1.08998 * 109.48147 * 182.40843 * 20 19 18 40 40 H 1.08997 * 109.48550 * 62.37144 * 20 19 18 41 41 H 1.09003 * 109.47953 * 178.86010 * 22 21 20 42 42 H 1.08995 * 109.49265 * 58.82602 * 22 21 20 43 43 H 1.09001 * 109.52724 * 297.70937 * 23 22 21 44 44 H 1.09000 * 109.52338 * 177.51272 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 2.2031 -3.6127 0.0005 12 6 1.8369 -4.8123 0.4939 13 8 0.7191 -4.9701 0.9373 14 6 2.8164 -5.9576 0.4944 15 6 2.1538 -7.1950 1.1034 16 6 3.1486 -8.3576 1.1045 17 8 2.5295 -9.5134 1.6727 18 6 3.3777 -10.6626 1.7208 19 6 4.1358 -10.6845 3.0516 20 6 4.9813 -11.9585 3.1274 21 8 4.1336 -13.1002 2.9859 22 6 3.4352 -13.1577 1.7405 23 6 2.5276 -11.9319 1.6091 24 6 0.3719 -2.5805 -1.2490 25 9 -0.3281 -3.7918 -1.2487 26 9 -0.5373 -1.5172 -1.2495 27 9 1.1765 -2.5066 -2.3911 28 1 -0.4850 0.8400 -0.0004 29 1 3.0969 -3.4866 -0.3544 30 1 3.6920 -5.6865 1.0841 31 1 3.1210 -6.1756 -0.5292 32 1 1.2784 -7.4659 0.5133 33 1 1.8490 -6.9772 2.1270 34 1 4.0238 -8.0864 1.6947 35 1 3.4537 -8.5755 0.0810 36 1 4.0896 -10.6266 0.8962 37 1 4.7857 -9.8117 3.1151 38 1 3.4237 -10.6703 3.8768 39 1 5.4899 -12.0005 4.0905 40 1 5.7200 -11.9527 2.3260 41 1 2.8300 -14.0636 1.7046 42 1 4.1536 -13.1677 0.9209 43 1 1.7830 -11.9428 2.4051 44 1 2.0274 -11.9511 0.6408 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928798820.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:17 Heat of formation + Delta-G solvation = -306.714316 kcal Electronic energy + Delta-G solvation = -29982.497783 eV Core-core repulsion = 25098.138375 eV Total energy + Delta-G solvation = -4884.359408 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.43028 -48.06715 -47.73934 -40.73046 -40.49381 -38.54488 -36.55803 -34.90884 -34.44484 -33.04621 -32.09270 -30.56419 -27.79446 -26.57272 -25.18423 -24.58857 -23.71993 -22.55942 -21.46397 -21.15759 -19.36356 -18.87045 -18.67995 -18.35944 -17.84479 -17.48346 -17.21702 -16.93395 -16.91106 -16.69445 -15.98437 -15.78235 -15.77193 -15.09934 -15.00169 -14.87605 -14.79084 -14.50941 -14.45675 -14.30693 -14.09316 -14.01902 -13.85657 -13.73478 -13.24349 -13.17468 -12.89879 -12.72075 -12.65713 -12.48900 -12.37191 -12.21664 -12.20148 -11.85217 -11.66460 -11.57103 -11.32308 -10.82698 -10.70021 -10.65458 -10.42012 -10.04440 -8.21883 -6.52918 1.46521 1.47067 1.58738 1.70715 2.16243 2.37952 2.51843 2.70921 2.93508 2.97529 3.68140 3.76291 3.77884 3.81939 3.88283 3.98347 4.03686 4.05901 4.12242 4.22245 4.27113 4.36800 4.47945 4.53903 4.55448 4.60989 4.67031 4.74241 4.76994 4.84447 4.95083 5.05662 5.10801 5.15600 5.20881 5.30651 5.44146 5.55562 5.65052 6.23419 6.32279 6.52486 6.75956 7.16917 7.41330 8.70876 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.026286 B = 0.001983 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.952247 B =14113.759029 C =14725.065359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.011 3.989 3 Si 0.984 3.016 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.255 1.255 7 C -0.560 4.560 8 H 0.095 0.905 9 C 0.250 3.750 10 H 0.043 0.957 11 N -0.707 5.707 12 C 0.496 3.504 13 O -0.585 6.585 14 C -0.120 4.120 15 C -0.099 4.099 16 C 0.068 3.932 17 O -0.406 6.406 18 C 0.083 3.917 19 C -0.177 4.177 20 C 0.062 3.938 21 O -0.405 6.405 22 C 0.064 3.936 23 C -0.155 4.155 24 C 0.413 3.587 25 F -0.220 7.220 26 F -0.152 7.152 27 F -0.202 7.202 28 H 0.268 0.732 29 H 0.416 0.584 30 H 0.128 0.872 31 H 0.123 0.877 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.106 0.894 40 H 0.069 0.931 41 H 0.110 0.890 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.002 -19.705 0.963 24.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.194 4.194 3 Si 0.808 3.192 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.596 4.596 8 H 0.113 0.887 9 C 0.142 3.858 10 H 0.061 0.939 11 N -0.359 5.359 12 C 0.284 3.716 13 O -0.465 6.465 14 C -0.160 4.160 15 C -0.138 4.138 16 C -0.008 4.008 17 O -0.326 6.326 18 C 0.025 3.975 19 C -0.215 4.215 20 C -0.014 4.014 21 O -0.325 6.325 22 C -0.012 4.012 23 C -0.193 4.193 24 C 0.357 3.643 25 F -0.202 7.202 26 F -0.133 7.133 27 F -0.184 7.184 28 H 0.078 0.922 29 H 0.253 0.747 30 H 0.146 0.854 31 H 0.141 0.859 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.079 0.921 39 H 0.124 0.876 40 H 0.087 0.913 41 H 0.128 0.872 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.813 -19.844 1.470 23.667 hybrid contribution -0.130 1.390 -0.650 1.540 sum 12.683 -18.453 0.820 22.406 Atomic orbital electron populations 1.70543 1.07582 1.28126 1.44807 1.26052 0.95908 1.03883 0.93532 0.85142 0.78628 0.77026 0.78427 1.19966 1.21014 1.17829 1.21247 0.94597 0.88266 1.55519 0.88719 1.19287 0.89094 0.87901 0.89497 0.93902 1.45982 1.17147 1.10053 1.62670 1.21671 0.89015 0.84628 0.76275 1.90696 1.24100 1.83757 1.47932 1.21535 0.97913 0.90742 1.05802 1.21124 0.98419 0.92764 1.01461 1.22564 0.95239 0.84611 0.98420 1.87938 1.40995 1.20304 1.83316 1.22258 0.92336 0.85530 0.97336 1.22721 1.00311 1.00047 0.98436 1.22688 0.91648 0.83476 1.03611 1.87920 1.61183 1.44956 1.38397 1.22694 0.94591 0.97780 0.86149 1.22319 0.99379 0.93947 1.03637 1.23341 0.80853 0.72298 0.87836 1.93060 1.81631 1.48505 1.97026 1.93374 1.69039 1.54601 1.96328 1.92985 1.74063 1.96147 1.55199 0.92237 0.74695 0.85367 0.85870 0.92886 0.92632 0.91214 0.91231 0.90222 0.89496 0.92055 0.87552 0.91308 0.87225 0.91263 0.91947 0.89602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.80 9.50 21.45 0.20 -48.60 16 2 C 0.01 0.58 5.20 84.65 0.44 1.02 16 3 Si 0.98 40.12 29.54 68.60 2.03 42.15 16 4 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 5 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 6 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 7 C -0.56 -27.83 8.46 25.60 0.22 -27.61 16 8 H 0.09 4.27 7.74 -2.91 -0.02 4.24 16 9 C 0.25 12.42 2.21 44.24 0.10 12.52 16 10 H 0.04 2.49 7.58 -2.39 -0.02 2.48 16 11 N -0.71 -27.28 4.98 -446.10 -2.22 -29.50 16 12 C 0.50 18.35 7.36 87.66 0.65 19.00 16 13 O -0.59 -27.79 14.55 -3.04 -0.04 -27.83 16 14 C -0.12 -2.74 5.70 29.85 0.17 -2.57 16 15 C -0.10 -2.50 4.87 30.60 0.15 -2.35 16 16 C 0.07 1.23 5.76 71.98 0.41 1.64 16 17 O -0.41 -9.06 10.00 -148.98 -1.49 -10.55 16 18 C 0.08 1.33 2.70 30.71 0.08 1.41 16 19 C -0.18 -2.58 5.76 30.68 0.18 -2.40 16 20 C 0.06 0.75 6.84 72.01 0.49 1.24 16 21 O -0.41 -6.65 10.77 -148.98 -1.60 -8.25 16 22 C 0.06 0.78 6.84 72.01 0.49 1.27 16 23 C -0.15 -2.37 5.79 30.68 0.18 -2.20 16 24 C 0.41 21.42 2.81 71.98 0.20 21.62 16 25 F -0.22 -11.46 15.68 44.97 0.70 -10.75 16 26 F -0.15 -8.66 12.91 44.97 0.58 -8.08 16 27 F -0.20 -9.78 16.94 44.97 0.76 -9.02 16 28 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 29 H 0.42 12.84 8.54 -92.71 -0.79 12.05 16 30 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.12 2.10 8.14 -2.38 -0.02 2.08 16 32 H 0.05 1.59 8.10 -2.39 -0.02 1.57 16 33 H 0.05 1.64 8.10 -2.39 -0.02 1.62 16 34 H 0.07 0.97 7.99 -2.39 -0.02 0.95 16 35 H 0.07 0.98 8.09 -2.39 -0.02 0.96 16 36 H 0.08 0.97 7.79 -2.39 -0.02 0.95 16 37 H 0.09 1.05 8.00 -2.38 -0.02 1.03 16 38 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.11 1.03 8.14 -2.39 -0.02 1.02 16 40 H 0.07 0.58 8.14 -2.39 -0.02 0.57 16 41 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -70.87 370.01 2.90 -67.97 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.23 Total: 19.88 kcal Atomic # 6 Polarization: 18.83 SS G_CDS: 3.76 Total: 22.59 kcal Atomic # 7 Polarization: -76.08 SS G_CDS: -2.02 Total: -78.10 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: -3.14 Total: -46.64 kcal Atomic # 9 Polarization: -29.90 SS G_CDS: 2.05 Total: -27.85 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.15 kcal Total: -70.87 2.90 -67.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928798820.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -238.744 kcal (2) G-P(sol) polarization free energy of solvation -70.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -309.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -306.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds