Wall clock time and date at job start Sat Apr 11 2020 05:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.40156 * 119.84323 * 2 1 4 4 C 1.36453 * 119.41014 * 180.02562 * 3 2 1 5 5 C 1.40085 * 119.25792 * 359.95591 * 4 3 2 6 6 C 1.40862 * 132.87061 * 180.02562 * 5 4 3 7 7 C 1.46550 * 126.57787 * 359.96635 * 6 5 4 8 8 O 1.21730 * 120.00078 * 359.97438 * 7 6 5 9 9 N 1.34772 * 119.99532 * 179.97438 * 7 6 5 10 10 C 1.40110 * 119.99758 * 180.02562 * 9 7 6 11 11 C 1.40415 * 125.97296 * 359.97438 * 10 9 7 12 12 C 1.35241 * 107.86596 * 179.71723 * 11 10 9 13 13 N 1.34974 * 107.85906 * 0.42704 * 12 11 10 14 14 C 1.46499 * 125.97076 * 179.83552 * 13 12 11 15 15 C 1.50698 * 109.47235 * 124.71556 * 14 13 12 16 16 H 1.08001 * 120.00009 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00511 * 179.97438 * 15 14 13 18 18 N 1.31505 * 120.00128 * 179.72460 * 17 15 14 19 19 Si 1.86803 * 119.99547 * 0.02562 * 17 15 14 20 20 H 1.48507 * 109.46944 * 269.72251 * 19 17 15 21 21 H 1.48492 * 109.47221 * 29.71881 * 19 17 15 22 22 H 1.48495 * 109.47028 * 149.72516 * 19 17 15 23 23 N 1.31225 * 125.97288 * 179.97438 * 10 9 7 24 24 C 1.40556 * 106.83811 * 180.22519 * 6 5 4 25 25 N 1.30752 * 108.74702 * 359.61963 * 24 6 5 26 26 N 1.36585 * 120.22847 * 0.02562 * 5 4 3 27 27 C 1.35187 * 119.83559 * 179.97438 * 2 1 3 28 28 C 1.50701 * 119.65299 * 0.02562 * 27 2 1 29 29 H 1.08997 * 109.46920 * 264.30597 * 1 2 3 30 30 H 1.08996 * 109.46906 * 24.30046 * 1 2 3 31 31 H 1.08994 * 109.47384 * 144.29892 * 1 2 3 32 32 H 1.08003 * 120.29306 * 0.02562 * 3 2 1 33 33 H 1.08003 * 120.36975 * 179.97438 * 4 3 2 34 34 H 0.97000 * 120.00707 * 359.97438 * 9 7 6 35 35 H 1.07996 * 126.07276 * 0.02562 * 11 10 9 36 36 H 1.08001 * 126.07361 * 180.25904 * 12 11 10 37 37 H 1.09001 * 109.47420 * 4.71448 * 14 13 12 38 38 H 1.09003 * 109.47508 * 244.71828 * 14 13 12 39 39 H 0.97007 * 119.99875 * 180.27796 * 18 17 15 40 40 H 1.08000 * 125.63048 * 179.77120 * 24 6 5 41 41 H 1.08999 * 109.46995 * 275.70088 * 28 27 2 42 42 H 1.09005 * 109.46420 * 35.69869 * 28 27 2 43 43 H 1.08989 * 109.47193 * 155.69714 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2045 1.2157 0.0000 4 6 3.5690 1.2054 -0.0005 5 6 4.2444 -0.0219 -0.0001 6 6 5.6109 -0.3638 0.0000 7 6 6.7437 0.5660 -0.0010 8 8 6.5454 1.7670 -0.0025 9 7 8.0050 0.0912 -0.0002 10 6 9.0881 0.9800 -0.0007 11 6 9.0048 2.3817 -0.0024 12 6 10.2651 2.8722 0.0042 13 7 11.1168 1.8252 0.0002 14 6 12.5796 1.9058 0.0014 15 6 13.1251 1.1206 1.1662 16 1 12.4497 0.6120 1.8382 17 6 14.4864 1.0506 1.3736 18 7 14.9621 0.3699 2.3932 19 14 15.6546 1.9298 0.2109 20 1 16.0328 1.0150 -0.8962 21 1 14.9856 3.1322 -0.3474 22 1 16.8741 2.3409 0.9518 23 7 10.3577 0.6480 0.0005 24 6 5.6794 -1.7676 -0.0048 25 7 4.4632 -2.2477 0.0006 26 7 3.5420 -1.1933 0.0003 27 6 2.1796 -1.1727 0.0005 28 6 1.4145 -2.4710 0.0005 29 1 -0.3633 -0.1020 1.0226 30 1 -0.3633 0.9366 -0.4229 31 1 -0.3634 -0.8345 -0.5997 32 1 1.6667 2.1523 0.0004 33 1 4.1221 2.1331 -0.0010 34 1 8.1631 -0.8659 0.0013 35 1 8.0957 2.9646 -0.0032 36 1 10.5411 3.9164 0.0087 37 1 12.8860 2.9481 0.0904 38 1 12.9672 1.4916 -0.9294 39 1 15.9197 0.3240 2.5414 40 1 6.5868 -2.3533 -0.0095 41 1 1.1417 -2.7320 1.0231 42 1 0.5113 -2.3603 -0.5996 43 1 2.0370 -3.2596 -0.4220 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933103421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:30 Heat of formation + Delta-G solvation = 154.970094 kcal Electronic energy + Delta-G solvation = -27475.098140 eV Core-core repulsion = 23524.510033 eV Total energy + Delta-G solvation = -3950.588107 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.54954 -40.60471 -39.08554 -38.11262 -34.75152 -34.15741 -33.31585 -32.80407 -31.29841 -29.99294 -29.32285 -28.80673 -27.26097 -26.40708 -24.13823 -22.93195 -22.30521 -22.08340 -21.08698 -20.00338 -19.38016 -17.98309 -17.15157 -16.89552 -16.55582 -16.37554 -16.19950 -15.61560 -15.21673 -14.98800 -14.60343 -14.39524 -14.25388 -13.97606 -13.73692 -13.48003 -13.30918 -13.17835 -13.02144 -12.76968 -12.53175 -12.36149 -12.29068 -12.07933 -11.98118 -11.75204 -11.14052 -11.08180 -10.85793 -10.60530 -10.44379 -10.03653 -9.93515 -9.60866 -9.56982 -9.46928 -8.74062 -8.15106 -7.93828 -7.42373 -6.20699 -4.22731 0.28006 0.62189 1.74016 1.87801 2.66957 2.83576 2.88625 3.18497 3.23483 3.26539 3.29939 3.67331 3.90202 3.94097 4.17784 4.20702 4.25335 4.31522 4.44741 4.70189 4.84043 4.92219 4.97486 5.02089 5.07286 5.09901 5.13029 5.21898 5.36524 5.51261 5.54750 5.74564 5.76870 5.83282 6.00348 6.10373 6.28594 6.45029 6.46275 6.50479 6.64308 6.70394 7.12224 7.29102 7.43810 7.67567 7.86930 8.36839 8.39301 8.62954 8.89677 9.34363 10.91987 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030792 B = 0.001998 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.119477 B =14008.028268 C =14658.357916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.131 4.131 3 C -0.069 4.069 4 C -0.108 4.108 5 C 0.167 3.833 6 C -0.307 4.307 7 C 0.608 3.392 8 O -0.530 6.530 9 N -0.628 5.628 10 C 0.266 3.734 11 C -0.282 4.282 12 C 0.050 3.950 13 N -0.320 5.320 14 C 0.232 3.768 15 C -0.534 4.534 16 H 0.086 0.914 17 C 0.075 3.925 18 N -0.888 5.888 19 Si 0.875 3.125 20 H -0.272 1.272 21 H -0.265 1.265 22 H -0.281 1.281 23 N -0.299 5.299 24 C 0.120 3.880 25 N -0.317 5.317 26 N -0.262 5.262 27 C 0.136 3.864 28 C -0.117 4.117 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.146 0.854 33 H 0.164 0.836 34 H 0.409 0.591 35 H 0.162 0.838 36 H 0.168 0.832 37 H 0.053 0.947 38 H 0.037 0.963 39 H 0.268 0.732 40 H 0.201 0.799 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.747 -1.035 -6.558 31.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.134 4.134 3 C -0.092 4.092 4 C -0.127 4.127 5 C 0.046 3.954 6 C -0.322 4.322 7 C 0.396 3.604 8 O -0.407 6.407 9 N -0.274 5.274 10 C 0.012 3.988 11 C -0.313 4.313 12 C -0.099 4.099 13 N -0.102 5.102 14 C 0.113 3.887 15 C -0.572 4.572 16 H 0.104 0.896 17 C -0.128 4.128 18 N -0.525 5.525 19 Si 0.701 3.299 20 H -0.197 1.197 21 H -0.190 1.190 22 H -0.206 1.206 23 N -0.130 5.130 24 C -0.060 4.060 25 N -0.138 5.138 26 N -0.026 5.026 27 C 0.028 3.972 28 C -0.174 4.174 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.164 0.836 33 H 0.182 0.818 34 H 0.244 0.756 35 H 0.180 0.820 36 H 0.185 0.815 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.218 0.782 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -30.344 -2.397 -6.459 31.116 hybrid contribution 1.075 1.200 -0.401 1.660 sum -29.269 -1.197 -6.860 30.086 Atomic orbital electron populations 1.20759 0.88507 1.03687 1.03038 1.19386 0.97515 0.90890 1.05648 1.21290 0.93682 0.98198 0.96030 1.20914 0.94101 0.96762 1.00949 1.19247 0.91214 0.87222 0.97684 1.19474 0.91160 0.93166 1.28443 1.16673 0.80760 0.87208 0.75726 1.90691 1.84673 1.15234 1.50074 1.42136 1.02987 1.09193 1.73110 1.19051 0.87131 0.89759 1.02861 1.21557 0.97951 0.92337 1.19502 1.22551 0.90000 0.94704 1.02659 1.48596 1.07276 1.01545 1.52778 1.20040 0.70539 0.98884 0.99226 1.21122 0.93019 1.32411 1.10611 0.89626 1.24839 0.97761 0.94899 0.95320 1.69874 1.13691 1.40442 1.28517 0.86887 0.81203 0.80516 0.81318 1.19731 1.18961 1.20630 1.77393 0.99967 1.07705 1.27896 1.24156 0.96146 0.93116 0.92601 1.77549 0.97674 1.07299 1.31257 1.45952 1.05157 1.06017 1.45433 1.19986 0.78948 0.98058 1.00215 1.20960 0.99876 0.92430 1.04104 0.90487 0.90627 0.90714 0.83578 0.81822 0.75583 0.82019 0.81458 0.92934 0.94506 0.92214 0.78221 0.89433 0.89030 0.89721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.31 9.45 36.01 0.34 0.03 16 2 C -0.13 -0.86 5.84 -104.99 -0.61 -1.48 16 3 C -0.07 -0.50 9.73 -39.51 -0.38 -0.88 16 4 C -0.11 -1.12 9.73 -39.53 -0.38 -1.51 16 5 C 0.17 2.10 6.76 -84.06 -0.57 1.53 16 6 C -0.31 -4.13 6.17 -104.68 -0.65 -4.77 16 7 C 0.61 9.66 7.75 -12.91 -0.10 9.56 16 8 O -0.53 -9.48 12.83 5.16 0.07 -9.42 16 9 N -0.63 -10.30 5.44 -12.35 -0.07 -10.36 16 10 C 0.27 5.43 8.11 -154.43 -1.25 4.18 16 11 C -0.28 -5.59 9.60 -39.83 -0.38 -5.97 16 12 C 0.05 0.98 11.44 -17.24 -0.20 0.79 16 13 N -0.32 -7.36 3.67 -62.56 -0.23 -7.59 16 14 C 0.23 5.57 5.33 -5.20 -0.03 5.54 16 15 C -0.53 -15.20 9.79 -34.44 -0.34 -15.54 16 16 H 0.09 2.77 8.06 -52.49 -0.42 2.34 16 17 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 18 N -0.89 -26.80 13.96 55.43 0.77 -26.02 16 19 Si 0.87 20.33 27.47 -169.99 -4.67 15.66 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 N -0.30 -6.96 12.42 31.43 0.39 -6.57 16 24 C 0.12 1.37 11.44 -17.14 -0.20 1.18 16 25 N -0.32 -3.83 12.18 30.75 0.37 -3.46 16 26 N -0.26 -3.01 3.86 -6.84 -0.03 -3.03 16 27 C 0.14 1.14 6.81 -81.71 -0.56 0.58 16 28 C -0.12 -0.63 9.49 36.01 0.34 -0.29 16 29 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.15 8.05 -51.93 -0.42 -0.26 16 31 H 0.07 0.14 6.15 -51.93 -0.32 -0.17 16 32 H 0.15 0.61 8.06 -52.48 -0.42 0.19 16 33 H 0.16 1.75 7.12 -52.48 -0.37 1.38 16 34 H 0.41 5.51 7.74 -40.82 -0.32 5.19 16 35 H 0.16 3.08 5.90 -52.49 -0.31 2.77 16 36 H 0.17 2.60 8.06 -52.49 -0.42 2.18 16 37 H 0.05 1.16 7.13 -51.93 -0.37 0.79 16 38 H 0.04 0.87 7.57 -51.93 -0.39 0.47 16 39 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.20 1.58 7.46 -52.49 -0.39 1.19 16 41 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.09 0.26 6.15 -51.93 -0.32 -0.05 16 43 H 0.08 0.56 7.89 -51.94 -0.41 0.15 16 LS Contribution 365.40 15.07 5.51 5.51 Total: -1.00 -36.72 365.40 -7.84 -44.56 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -4.90 Total: 5.76 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -5.06 Total: -5.02 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: 1.22 Total: -57.05 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.07 Total: -9.42 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.67 Total: 15.66 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.72 -7.84 -44.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933103421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.532 kcal (2) G-P(sol) polarization free energy of solvation -36.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds