Wall clock time and date at job start Sat Apr 11 2020 05:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.40156 * 119.84323 * 2 1 4 4 C 1.36453 * 119.41014 * 180.02562 * 3 2 1 5 5 C 1.40085 * 119.25792 * 359.95591 * 4 3 2 6 6 C 1.40862 * 132.87061 * 180.02562 * 5 4 3 7 7 C 1.46550 * 126.57787 * 359.96635 * 6 5 4 8 8 O 1.21730 * 120.00078 * 359.97438 * 7 6 5 9 9 N 1.34772 * 119.99532 * 179.97438 * 7 6 5 10 10 C 1.40110 * 119.99758 * 180.02562 * 9 7 6 11 11 C 1.40415 * 125.97296 * 359.97438 * 10 9 7 12 12 C 1.35241 * 107.86596 * 179.71723 * 11 10 9 13 13 N 1.34974 * 107.85906 * 0.42704 * 12 11 10 14 14 C 1.46499 * 125.97076 * 179.83552 * 13 12 11 15 15 C 1.50698 * 109.47235 * 124.71556 * 14 13 12 16 16 H 1.08001 * 120.00009 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00511 * 179.97438 * 15 14 13 18 18 N 1.31505 * 120.00128 * 179.72460 * 17 15 14 19 19 Si 1.86803 * 119.99547 * 0.02562 * 17 15 14 20 20 H 1.48507 * 109.46944 * 269.72251 * 19 17 15 21 21 H 1.48492 * 109.47221 * 29.71881 * 19 17 15 22 22 H 1.48495 * 109.47028 * 149.72516 * 19 17 15 23 23 N 1.31225 * 125.97288 * 179.97438 * 10 9 7 24 24 C 1.40556 * 106.83811 * 180.22519 * 6 5 4 25 25 N 1.30752 * 108.74702 * 359.61963 * 24 6 5 26 26 N 1.36585 * 120.22847 * 0.02562 * 5 4 3 27 27 C 1.35187 * 119.83559 * 179.97438 * 2 1 3 28 28 C 1.50701 * 119.65299 * 0.02562 * 27 2 1 29 29 H 1.08997 * 109.46920 * 264.30597 * 1 2 3 30 30 H 1.08996 * 109.46906 * 24.30046 * 1 2 3 31 31 H 1.08994 * 109.47384 * 144.29892 * 1 2 3 32 32 H 1.08003 * 120.29306 * 0.02562 * 3 2 1 33 33 H 1.08003 * 120.36975 * 179.97438 * 4 3 2 34 34 H 0.97000 * 120.00707 * 359.97438 * 9 7 6 35 35 H 1.07996 * 126.07276 * 0.02562 * 11 10 9 36 36 H 1.08001 * 126.07361 * 180.25904 * 12 11 10 37 37 H 1.09001 * 109.47420 * 4.71448 * 14 13 12 38 38 H 1.09003 * 109.47508 * 244.71828 * 14 13 12 39 39 H 0.97007 * 119.99875 * 180.27796 * 18 17 15 40 40 H 1.08000 * 125.63048 * 179.77120 * 24 6 5 41 41 H 1.08999 * 109.46995 * 275.70088 * 28 27 2 42 42 H 1.09005 * 109.46420 * 35.69869 * 28 27 2 43 43 H 1.08989 * 109.47193 * 155.69714 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2045 1.2157 0.0000 4 6 3.5690 1.2054 -0.0005 5 6 4.2444 -0.0219 -0.0001 6 6 5.6109 -0.3638 0.0000 7 6 6.7437 0.5660 -0.0010 8 8 6.5454 1.7670 -0.0025 9 7 8.0050 0.0912 -0.0002 10 6 9.0881 0.9800 -0.0007 11 6 9.0048 2.3817 -0.0024 12 6 10.2651 2.8722 0.0042 13 7 11.1168 1.8252 0.0002 14 6 12.5796 1.9058 0.0014 15 6 13.1251 1.1206 1.1662 16 1 12.4497 0.6120 1.8382 17 6 14.4864 1.0506 1.3736 18 7 14.9621 0.3699 2.3932 19 14 15.6546 1.9298 0.2109 20 1 16.0328 1.0150 -0.8962 21 1 14.9856 3.1322 -0.3474 22 1 16.8741 2.3409 0.9518 23 7 10.3577 0.6480 0.0005 24 6 5.6794 -1.7676 -0.0048 25 7 4.4632 -2.2477 0.0006 26 7 3.5420 -1.1933 0.0003 27 6 2.1796 -1.1727 0.0005 28 6 1.4145 -2.4710 0.0005 29 1 -0.3633 -0.1020 1.0226 30 1 -0.3633 0.9366 -0.4229 31 1 -0.3634 -0.8345 -0.5997 32 1 1.6667 2.1523 0.0004 33 1 4.1221 2.1331 -0.0010 34 1 8.1631 -0.8659 0.0013 35 1 8.0957 2.9646 -0.0032 36 1 10.5411 3.9164 0.0087 37 1 12.8860 2.9481 0.0904 38 1 12.9672 1.4916 -0.9294 39 1 15.9197 0.3240 2.5414 40 1 6.5868 -2.3533 -0.0095 41 1 1.1417 -2.7320 1.0231 42 1 0.5113 -2.3603 -0.5996 43 1 2.0370 -3.2596 -0.4220 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933103421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:29 Heat of formation + Delta-G solvation = 130.387636 kcal Electronic energy + Delta-G solvation = -27476.164115 eV Core-core repulsion = 23524.510033 eV Total energy + Delta-G solvation = -3951.654083 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.36158 -42.15336 -40.32993 -38.89321 -36.20775 -35.19199 -34.87731 -33.63514 -33.01851 -31.05691 -30.79375 -29.33022 -28.97192 -27.13988 -25.29846 -24.22701 -23.46117 -22.90907 -22.41894 -21.52693 -20.66626 -19.09955 -18.85133 -18.32139 -17.54539 -17.39698 -17.18603 -16.84842 -16.44119 -16.22602 -15.95113 -15.48144 -15.26116 -15.06510 -14.79724 -14.65095 -14.45356 -14.26394 -13.85933 -13.75501 -13.73473 -13.61068 -13.24583 -13.01129 -12.95196 -12.64640 -12.45109 -12.41494 -12.16660 -11.89953 -11.81308 -11.62375 -11.42896 -11.38383 -10.87922 -10.86255 -10.31644 -9.74972 -9.13552 -8.68295 -8.36574 -6.46842 -0.46306 -0.11621 0.81327 0.96487 1.20943 1.35085 1.40123 1.45253 1.51461 1.83203 2.18161 2.29669 2.40914 2.59005 2.95916 3.01525 3.45186 3.61094 3.67530 3.80530 3.88169 4.01418 4.19669 4.21430 4.30996 4.40340 4.55710 4.56211 4.61270 4.73797 4.83781 4.88098 4.90057 4.93913 5.01242 5.07325 5.16738 5.19553 5.21776 5.26401 5.27931 5.51594 5.72525 5.90526 6.02707 6.22555 6.33101 6.43466 6.59382 7.03393 7.14458 7.16073 8.80488 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030792 B = 0.001998 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.119477 B =14008.028268 C =14658.357916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.121 4.121 3 C -0.042 4.042 4 C -0.142 4.142 5 C 0.155 3.845 6 C -0.344 4.344 7 C 0.610 3.390 8 O -0.556 6.556 9 N -0.625 5.625 10 C 0.270 3.730 11 C -0.294 4.294 12 C 0.061 3.939 13 N -0.345 5.345 14 C 0.239 3.761 15 C -0.547 4.547 16 H 0.025 0.975 17 C 0.013 3.987 18 N -0.942 5.942 19 Si 0.957 3.043 20 H -0.266 1.266 21 H -0.229 1.229 22 H -0.278 1.278 23 N -0.349 5.349 24 C 0.127 3.873 25 N -0.337 5.337 26 N -0.266 5.266 27 C 0.116 3.884 28 C -0.114 4.114 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.183 0.817 33 H 0.153 0.847 34 H 0.420 0.580 35 H 0.170 0.830 36 H 0.212 0.788 37 H 0.084 0.916 38 H 0.045 0.955 39 H 0.272 0.728 40 H 0.224 0.776 41 H 0.099 0.901 42 H 0.123 0.877 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.429 0.591 -8.173 34.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.124 4.124 3 C -0.065 4.065 4 C -0.161 4.161 5 C 0.034 3.966 6 C -0.359 4.359 7 C 0.401 3.599 8 O -0.434 6.434 9 N -0.273 5.273 10 C 0.015 3.985 11 C -0.325 4.325 12 C -0.087 4.087 13 N -0.127 5.127 14 C 0.119 3.881 15 C -0.585 4.585 16 H 0.044 0.956 17 C -0.186 4.186 18 N -0.581 5.581 19 Si 0.777 3.223 20 H -0.191 1.191 21 H -0.152 1.152 22 H -0.203 1.203 23 N -0.180 5.180 24 C -0.054 4.054 25 N -0.157 5.157 26 N -0.029 5.029 27 C 0.008 3.992 28 C -0.171 4.171 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.201 0.799 33 H 0.171 0.829 34 H 0.257 0.743 35 H 0.187 0.813 36 H 0.228 0.772 37 H 0.102 0.898 38 H 0.062 0.938 39 H 0.081 0.919 40 H 0.241 0.759 41 H 0.118 0.882 42 H 0.141 0.859 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -33.083 -0.796 -8.080 34.064 hybrid contribution 1.519 0.645 0.183 1.660 sum -31.563 -0.151 -7.897 32.537 Atomic orbital electron populations 1.20925 0.85199 1.05421 1.04394 1.19952 0.99578 0.89796 1.03109 1.21800 0.92483 1.00181 0.92071 1.20969 0.95585 0.95670 1.03916 1.19508 0.91257 0.88359 0.97505 1.19270 0.90849 0.93534 1.32226 1.17032 0.80825 0.87366 0.74686 1.90644 1.84937 1.16382 1.51452 1.42241 1.02414 1.09445 1.73179 1.19422 0.87236 0.90926 1.00924 1.21776 0.98521 0.92183 1.19987 1.23251 0.89256 0.95902 1.00260 1.48511 1.07167 1.02312 1.54664 1.19901 0.71382 0.99563 0.97210 1.21241 0.92814 1.32933 1.11481 0.95640 1.25945 0.99766 0.95606 0.97271 1.70054 1.14452 1.42503 1.31122 0.85600 0.78050 0.80221 0.78379 1.19085 1.15158 1.20327 1.77312 1.01237 1.08986 1.30469 1.24522 0.96930 0.92604 0.91336 1.77479 0.97918 1.07992 1.32345 1.46188 1.06172 1.05397 1.45116 1.20836 0.77997 1.00273 1.00061 1.21086 1.00278 0.90373 1.05330 0.89074 0.88908 0.89093 0.79949 0.82921 0.74324 0.81322 0.77165 0.89827 0.93763 0.91905 0.75933 0.88228 0.85914 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.14 9.45 71.24 0.67 0.53 16 2 C -0.12 -1.22 5.84 -20.10 -0.12 -1.34 16 3 C -0.04 -0.51 9.73 22.32 0.22 -0.29 16 4 C -0.14 -2.93 9.73 22.30 0.22 -2.71 16 5 C 0.16 3.99 6.76 39.49 0.27 4.26 16 6 C -0.34 -9.70 6.17 -19.90 -0.12 -9.83 16 7 C 0.61 20.37 7.75 86.41 0.67 21.04 16 8 O -0.56 -20.73 12.83 -4.44 -0.06 -20.78 16 9 N -0.62 -21.55 5.44 -311.19 -1.69 -23.25 16 10 C 0.27 11.41 8.11 133.34 1.08 12.49 16 11 C -0.29 -11.73 9.60 22.11 0.21 -11.52 16 12 C 0.06 2.35 11.44 83.52 0.96 3.30 16 13 N -0.34 -15.94 3.67 -351.84 -1.29 -17.23 16 14 C 0.24 11.31 5.33 85.63 0.46 11.77 16 15 C -0.55 -32.16 9.79 25.60 0.25 -31.91 16 16 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 17 C 0.01 0.73 5.47 84.66 0.46 1.20 16 18 N -0.94 -58.92 13.96 21.45 0.30 -58.62 16 19 Si 0.96 41.33 27.47 68.60 1.88 43.21 16 20 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 21 H -0.23 -8.52 6.54 99.48 0.65 -7.87 16 22 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 23 N -0.35 -16.91 12.42 -54.47 -0.68 -17.59 16 24 C 0.13 3.01 11.44 85.42 0.98 3.99 16 25 N -0.34 -8.29 12.18 -56.61 -0.69 -8.98 16 26 N -0.27 -6.05 3.86 -175.56 -0.68 -6.73 16 27 C 0.12 1.74 6.81 41.17 0.28 2.02 16 28 C -0.11 -0.96 9.49 71.24 0.68 -0.29 16 29 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 30 H 0.09 -0.11 8.05 -2.39 -0.02 -0.13 16 31 H 0.09 -0.11 6.15 -2.39 -0.01 -0.12 16 32 H 0.18 0.80 8.06 -2.91 -0.02 0.77 16 33 H 0.15 3.42 7.12 -2.91 -0.02 3.40 16 34 H 0.42 12.08 7.74 -92.71 -0.72 11.36 16 35 H 0.17 6.48 5.90 -2.91 -0.02 6.46 16 36 H 0.21 5.90 8.06 -2.91 -0.02 5.88 16 37 H 0.08 3.43 7.13 -2.39 -0.02 3.41 16 38 H 0.04 2.02 7.57 -2.39 -0.02 2.00 16 39 H 0.27 15.64 8.31 -92.70 -0.77 14.87 16 40 H 0.22 3.72 7.46 -2.91 -0.02 3.70 16 41 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.12 0.23 6.15 -2.38 -0.01 0.22 16 43 H 0.07 0.84 7.89 -2.39 -0.02 0.82 16 Total: -1.00 -86.32 365.40 4.56 -81.76 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 0.30 Total: 25.49 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: 7.16 Total: 2.71 kcal Atomic # 7 Polarization: -127.66 SS G_CDS: -4.73 Total: -132.39 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.06 Total: -20.78 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 1.88 Total: 43.21 kcal Total: -86.32 4.56 -81.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933103421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.145 kcal (2) G-P(sol) polarization free energy of solvation -86.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds