Wall clock time and date at job start Sat Apr 11 2020 05:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.36015 * 116.99827 * 2 1 4 4 C 1.38630 * 120.87166 * 0.02562 * 3 2 1 5 5 N 1.32512 * 119.11077 * 179.97438 * 4 3 2 6 6 C 1.31725 * 121.00462 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.03829 * 179.97438 * 6 5 4 8 8 H 1.09003 * 110.00693 * 3.85587 * 7 6 5 9 9 C 1.54318 * 109.88827 * 124.97321 * 7 6 5 10 10 C 1.55137 * 103.02011 * 141.69058 * 9 7 6 11 11 C 1.54906 * 101.65404 * 324.34814 * 10 9 7 12 12 N 1.47446 * 109.88944 * 242.74282 * 7 6 5 13 13 C 1.46899 * 110.99911 * 3.85086 * 12 7 6 14 14 C 1.52995 * 109.46993 * 165.01838 * 13 12 7 15 15 C 1.53000 * 109.47207 * 179.97438 * 14 13 12 16 16 S 1.81003 * 109.47372 * 179.97438 * 15 14 13 17 17 C 1.76192 * 100.00181 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00020 * 0.02562 * 17 16 15 19 19 C 1.38796 * 120.00274 * 180.02562 * 17 16 15 20 20 N 1.31635 * 119.99700 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00181 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47316 * 59.99951 * 21 19 17 23 23 H 1.48509 * 109.46867 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46948 * 299.99397 * 21 19 17 25 25 N 1.31822 * 121.92790 * 0.25598 * 6 5 4 26 26 C 1.32707 * 120.77358 * 359.48251 * 25 6 5 27 27 O 1.35610 * 120.53710 * 180.25514 * 26 25 6 28 28 H 1.09002 * 109.47477 * 299.99422 * 1 2 3 29 29 H 1.08994 * 109.47666 * 59.99928 * 1 2 3 30 30 H 1.09006 * 109.47273 * 180.02562 * 1 2 3 31 31 H 1.07999 * 120.44626 * 0.02562 * 4 3 2 32 32 H 1.09005 * 110.70134 * 260.07309 * 9 7 6 33 33 H 1.08993 * 110.70644 * 23.13055 * 9 7 6 34 34 H 1.09008 * 110.99208 * 82.43611 * 10 9 7 35 35 H 1.08996 * 110.99417 * 206.21534 * 10 9 7 36 36 H 1.09004 * 110.36987 * 278.23960 * 11 10 9 37 37 H 1.08996 * 110.37308 * 155.90117 * 11 10 9 38 38 H 1.08994 * 109.47149 * 45.01758 * 13 12 7 39 39 H 1.09006 * 109.47082 * 285.01804 * 13 12 7 40 40 H 1.09008 * 109.47259 * 59.99888 * 14 13 12 41 41 H 1.09006 * 109.47179 * 299.99907 * 14 13 12 42 42 H 1.09008 * 109.46799 * 59.99977 * 15 14 13 43 43 H 1.08993 * 109.47450 * 300.00375 * 15 14 13 44 44 H 0.96999 * 119.99785 * 179.97438 * 20 19 17 45 45 H 0.96700 * 113.99903 * 270.24720 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.3091 2.3859 0.0005 5 7 1.9466 3.5476 0.0010 6 6 3.2629 3.5992 0.0005 7 6 3.9422 4.9444 0.0005 8 1 3.1981 5.7380 0.0699 9 6 4.9218 5.0378 1.1893 10 6 6.1249 5.8129 0.5906 11 6 6.1560 5.2705 -0.8601 12 7 4.7346 5.1062 -1.2323 13 6 4.5546 3.9563 -2.1285 14 6 5.0717 4.3115 -3.5240 15 6 4.8848 3.1136 -4.4573 16 16 5.4958 3.5340 -6.1084 17 6 5.1665 2.0220 -6.9507 18 1 4.7137 1.1965 -6.4215 19 6 5.4889 1.8916 -8.2944 20 7 6.0402 2.8978 -8.9396 21 14 5.1390 0.2887 -9.1876 22 1 3.6827 0.0024 -9.1388 23 1 5.5727 0.4060 -10.6031 24 1 5.8831 -0.8162 -8.5314 25 7 4.0033 2.5086 -0.0055 26 6 3.4414 1.3063 -0.0010 27 8 4.2078 0.1875 -0.0021 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 0.2296 2.3542 0.0014 32 1 4.4758 5.5951 2.0132 33 1 5.2251 4.0438 1.5177 34 1 5.9419 6.8874 0.6018 35 1 7.0472 5.5706 1.1185 36 1 6.6709 4.3104 -0.8952 37 1 6.6415 5.9869 -1.5227 38 1 3.4960 3.7033 -2.1868 39 1 5.1113 3.1030 -1.7410 40 1 6.1304 4.5645 -3.4657 41 1 4.5150 5.1648 -3.9114 42 1 3.8262 2.8602 -4.5156 43 1 5.4416 2.2606 -4.0697 44 1 6.2659 2.8066 -9.8785 45 1 4.4296 -0.1364 -0.8858 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934272259.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:40 Heat of formation + Delta-G solvation = -43.643618 kcal Electronic energy + Delta-G solvation = -27482.343475 eV Core-core repulsion = 23626.294031 eV Total energy + Delta-G solvation = -3856.049444 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.83819 -40.55779 -39.25216 -38.58688 -35.56971 -34.62118 -34.34919 -32.57861 -31.69403 -29.77017 -28.34250 -27.89130 -26.50093 -25.29328 -24.72521 -23.07407 -21.92952 -21.44138 -20.04406 -19.62657 -19.46501 -19.01543 -17.59060 -17.21832 -16.91671 -16.79210 -16.51802 -16.32345 -16.10672 -15.67628 -15.56226 -15.15949 -14.86919 -14.61417 -14.51801 -14.05643 -13.82499 -13.57677 -13.37861 -13.05947 -12.95702 -12.90851 -12.74612 -12.70393 -12.43046 -12.39755 -12.29178 -12.07413 -11.98622 -11.84123 -11.75429 -11.48915 -11.37724 -11.15669 -10.48436 -10.36892 -9.79731 -9.34668 -8.69902 -8.39005 -6.16212 -0.36375 -0.28460 1.28862 1.39089 1.45839 1.68553 1.83685 2.20029 2.25624 2.41752 2.72607 2.95036 2.96018 3.07118 3.30518 3.48893 3.66098 3.73621 3.88579 3.92480 4.09550 4.18497 4.25838 4.30609 4.31466 4.32984 4.39307 4.51158 4.60946 4.64003 4.66975 4.69489 4.89924 4.92123 4.98080 5.03665 5.10389 5.15138 5.23904 5.35728 5.36306 5.51872 5.90112 5.92710 5.98086 6.15400 6.35775 6.83613 7.02541 8.70352 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009520 B = 0.003377 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2940.473665 B = 8290.539776 C =10476.328167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.309 6.309 3 C 0.010 3.990 4 C 0.080 3.920 5 N -0.493 5.493 6 C 0.285 3.715 7 C 0.141 3.859 8 H 0.120 0.880 9 C -0.125 4.125 10 C -0.114 4.114 11 C 0.035 3.965 12 N -0.515 5.515 13 C 0.074 3.926 14 C -0.079 4.079 15 C -0.083 4.083 16 S -0.188 6.188 17 C -0.542 4.542 18 H 0.071 0.929 19 C 0.018 3.982 20 N -0.907 5.907 21 Si 0.993 3.007 22 H -0.265 1.265 23 H -0.273 1.273 24 H -0.264 1.264 25 N -0.505 5.505 26 C 0.319 3.681 27 O -0.474 6.474 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.126 0.874 31 H 0.209 0.791 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.041 0.959 37 H 0.086 0.914 38 H 0.046 0.954 39 H 0.051 0.949 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.272 0.728 45 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.737 -1.202 24.140 26.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.220 6.220 3 C -0.042 4.042 4 C -0.085 4.085 5 N -0.209 5.209 6 C 0.017 3.983 7 C 0.031 3.969 8 H 0.137 0.863 9 C -0.164 4.164 10 C -0.152 4.152 11 C -0.092 4.092 12 N -0.239 5.239 13 C -0.056 4.056 14 C -0.118 4.118 15 C -0.233 4.233 16 S 0.041 5.959 17 C -0.690 4.690 18 H 0.089 0.911 19 C -0.188 4.188 20 N -0.543 5.543 21 Si 0.815 3.185 22 H -0.189 1.189 23 H -0.198 1.198 24 H -0.188 1.188 25 N -0.231 5.231 26 C 0.129 3.871 27 O -0.284 6.284 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.144 0.856 31 H 0.225 0.775 32 H 0.116 0.884 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.060 0.940 37 H 0.104 0.896 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -8.892 0.880 23.880 25.497 hybrid contribution -0.944 -3.699 -0.609 3.865 sum -9.836 -2.819 23.271 25.421 Atomic orbital electron populations 1.23584 0.75377 1.06666 1.03022 1.86196 1.24176 1.23792 1.87865 1.21051 0.93185 0.88399 1.01568 1.23891 1.02729 0.85378 0.96520 1.68153 1.10533 1.29144 1.13045 1.23395 0.86406 0.94439 0.94041 1.21552 0.95765 0.88653 0.90930 0.86275 1.22821 0.95480 1.01431 0.96649 1.22666 0.98271 1.00851 0.93416 1.23226 0.87922 1.00396 0.97671 1.63975 1.08831 1.38823 1.12222 1.22266 0.98943 0.92215 0.92174 1.21119 1.01793 0.96091 0.92776 1.23087 1.01627 1.01136 0.97448 1.84641 1.82073 1.24390 1.04816 1.22990 1.47915 0.99566 0.98488 0.91113 1.26062 0.93954 1.01565 0.97177 1.70148 1.40320 1.32954 1.10855 0.85081 0.79118 0.77197 0.77117 1.18926 1.19781 1.18848 1.67921 1.42257 0.98141 1.14783 1.19093 0.85185 0.86298 0.96475 1.84713 1.70807 1.37137 1.35695 0.90496 0.91090 0.85620 0.77456 0.88389 0.91766 0.89025 0.89111 0.94039 0.89593 0.93550 0.93093 0.91486 0.91637 0.92940 0.92375 0.91861 0.71813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.84 113.37 1.12 1.18 16 2 O -0.31 -5.73 10.36 -81.64 -0.85 -6.57 16 3 C 0.01 0.22 6.74 22.75 0.15 0.38 16 4 C 0.08 1.55 10.30 84.68 0.87 2.42 16 5 N -0.49 -11.79 10.30 -187.72 -1.93 -13.73 16 6 C 0.29 7.24 4.30 138.76 0.60 7.84 16 7 C 0.14 3.22 3.81 44.51 0.17 3.39 16 8 H 0.12 2.57 8.11 -2.39 -0.02 2.55 16 9 C -0.12 -2.27 6.42 31.77 0.20 -2.06 16 10 C -0.11 -1.88 7.08 31.98 0.23 -1.65 16 11 C 0.04 0.80 6.03 86.77 0.52 1.32 16 12 N -0.51 -13.50 5.13 -864.89 -4.43 -17.94 16 13 C 0.07 2.27 3.53 86.30 0.30 2.58 16 14 C -0.08 -2.82 5.32 30.59 0.16 -2.66 16 15 C -0.08 -3.58 5.67 71.98 0.41 -3.17 16 16 S -0.19 -10.30 21.44 -56.49 -1.21 -11.51 16 17 C -0.54 -31.86 9.50 67.95 0.65 -31.22 16 18 H 0.07 4.00 7.80 -2.91 -0.02 3.98 16 19 C 0.02 1.01 5.49 84.86 0.47 1.48 16 20 N -0.91 -55.27 13.22 21.65 0.29 -54.98 16 21 Si 0.99 44.09 29.55 68.60 2.03 46.12 16 22 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 24 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 25 N -0.51 -13.54 7.26 -300.35 -2.18 -15.72 16 26 C 0.32 8.08 7.85 84.94 0.67 8.75 16 27 O -0.47 -11.09 13.42 -77.14 -1.04 -12.13 16 28 H 0.08 0.42 7.71 -2.39 -0.02 0.40 16 29 H 0.07 0.51 7.71 -2.39 -0.02 0.49 16 30 H 0.13 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.21 2.31 6.46 -2.91 -0.02 2.29 16 32 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.06 1.37 7.33 -2.39 -0.02 1.35 16 34 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.04 1.04 7.54 -2.38 -0.02 1.03 16 37 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.05 1.52 6.64 -2.39 -0.02 1.51 16 39 H 0.05 1.63 6.10 -2.38 -0.01 1.62 16 40 H 0.07 2.39 7.67 -2.38 -0.02 2.37 16 41 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 42 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.06 2.45 8.14 -2.40 -0.02 2.43 16 44 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 45 H 0.42 6.80 9.06 -74.06 -0.67 6.13 16 Total: -1.00 -75.53 379.49 -2.47 -78.00 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.34 Total: 19.88 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: 6.52 Total: -11.42 kcal Atomic # 7 Polarization: -94.11 SS G_CDS: -8.26 Total: -102.37 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -1.88 Total: -18.70 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: -10.30 SS G_CDS: -1.21 Total: -11.51 kcal Total: -75.53 -2.47 -78.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934272259.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.360 kcal (2) G-P(sol) polarization free energy of solvation -75.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds