Wall clock time and date at job start Sat Apr 11 2020 05:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35625 * 125.67810 * 2 1 4 4 C 1.35509 * 108.85502 * 180.24733 * 3 2 1 5 5 Cl 1.73605 * 126.07853 * 179.79061 * 4 3 2 6 6 C 1.39889 * 107.85392 * 359.75281 * 4 3 2 7 7 C 1.37637 * 125.67530 * 179.81945 * 2 1 3 8 8 C 1.46670 * 126.22475 * 0.02562 * 7 2 1 9 9 O 1.21701 * 119.99802 * 4.41725 * 8 7 2 10 10 N 1.34774 * 120.00166 * 184.41261 * 8 7 2 11 11 C 1.46500 * 120.00326 * 175.55045 * 10 8 7 12 12 H 1.09002 * 109.45684 * 34.97080 * 11 10 8 13 13 C 1.53045 * 109.45820 * 275.00197 * 11 10 8 14 14 C 1.53194 * 109.31139 * 178.61250 * 13 11 10 15 15 N 1.46918 * 108.77523 * 54.63537 * 14 13 11 16 16 C 1.36936 * 120.63220 * 126.41491 * 15 14 13 17 17 H 1.08001 * 119.99587 * 320.57821 * 16 15 14 18 18 C 1.38810 * 120.00338 * 140.58488 * 16 15 14 19 19 N 1.31619 * 119.99854 * 354.10025 * 18 16 15 20 20 Si 1.86795 * 120.00240 * 174.10684 * 18 16 15 21 21 H 1.48494 * 109.47438 * 59.99621 * 20 18 16 22 22 H 1.48500 * 109.47308 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47020 * 299.99686 * 20 18 16 24 24 C 1.46930 * 118.73977 * 306.39100 * 15 14 13 25 25 C 1.53035 * 109.46331 * 154.93255 * 11 10 8 26 26 C 1.53001 * 109.49611 * 301.33709 * 25 11 10 27 27 C 1.53001 * 109.49873 * 61.43452 * 25 11 10 28 28 H 1.08998 * 109.46954 * 271.07789 * 1 2 3 29 29 H 1.08998 * 109.47253 * 31.08084 * 1 2 3 30 30 H 1.09004 * 109.47033 * 151.08195 * 1 2 3 31 31 H 1.08010 * 125.57477 * 359.97438 * 3 2 1 32 32 H 1.07992 * 126.45795 * 180.02562 * 6 4 3 33 33 H 0.97002 * 119.99523 * 355.27323 * 10 8 7 34 34 H 1.08996 * 109.49479 * 298.56231 * 13 11 10 35 35 H 1.09000 * 109.49632 * 58.62598 * 13 11 10 36 36 H 1.09001 * 109.58152 * 174.41905 * 14 13 11 37 37 H 1.08997 * 109.58306 * 294.70167 * 14 13 11 38 38 H 0.97003 * 120.00107 * 179.97438 * 19 18 16 39 39 H 1.09003 * 109.58872 * 173.39996 * 24 15 14 40 40 H 1.09004 * 109.58470 * 293.68130 * 24 15 14 41 41 H 1.08999 * 109.47146 * 60.00304 * 26 25 11 42 42 H 1.09005 * 109.46894 * 179.97438 * 26 25 11 43 43 H 1.08996 * 109.47184 * 299.99667 * 26 25 11 44 44 H 1.08997 * 109.47190 * 59.99652 * 27 25 11 45 45 H 1.08995 * 109.47295 * 180.02562 * 27 25 11 46 46 H 1.09004 * 109.46891 * 300.00487 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2560 1.1017 0.0000 4 6 3.5531 0.7095 -0.0055 5 17 4.9378 1.7567 -0.0129 6 6 3.5783 -0.6892 -0.0034 7 6 2.2677 -1.1181 0.0035 8 6 1.8120 -2.5122 0.0074 9 8 0.6242 -2.7643 -0.0735 10 7 2.7088 -3.5140 0.1004 11 6 2.2493 -4.9013 0.2025 12 1 1.3450 -5.0290 -0.3926 13 6 1.9474 -5.2320 1.6660 14 6 1.4344 -6.6721 1.7646 15 7 2.4135 -7.5672 1.1333 16 6 2.9165 -8.6430 1.8151 17 1 3.1547 -8.5538 2.8647 18 6 3.1203 -9.8482 1.1571 19 7 2.7233 -9.9927 -0.0894 20 14 3.9578 -11.2649 2.0408 21 1 3.1640 -11.6398 3.2384 22 1 4.0541 -12.4310 1.1264 23 1 5.3206 -10.8502 2.4601 24 6 2.8425 -7.2864 -0.2436 25 6 3.3398 -5.8394 -0.3197 26 6 3.6640 -5.4866 -1.7728 27 6 4.5983 -5.6863 0.5367 28 1 -0.3633 0.0193 1.0275 29 1 -0.3633 0.8801 -0.5305 30 1 -0.3633 -0.8996 -0.4970 31 1 1.9089 2.1245 -0.0004 32 1 4.4583 -1.3151 -0.0062 33 1 3.6585 -3.3167 0.0957 34 1 2.8572 -5.1286 2.2574 35 1 1.1878 -4.5479 2.0444 36 1 1.3120 -6.9454 2.8127 37 1 0.4764 -6.7546 1.2512 38 1 2.8660 -10.8347 -0.5494 39 1 3.6492 -7.9651 -0.5206 40 1 2.0012 -7.4221 -0.9233 41 1 4.0150 -4.4561 -1.8268 42 1 4.4410 -6.1547 -2.1442 43 1 2.7672 -5.5974 -2.3823 44 1 4.3668 -5.9391 1.5713 45 1 5.3749 -6.3543 0.1641 46 1 4.9501 -4.6559 0.4846 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940875348.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:46 Heat of formation + Delta-G solvation = 21.442281 kcal Electronic energy + Delta-G solvation = -28183.272424 eV Core-core repulsion = 24328.001610 eV Total energy + Delta-G solvation = -3855.270814 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.69201 -39.73665 -37.89725 -36.60170 -34.66860 -33.32827 -32.57487 -31.97729 -30.10530 -28.88332 -26.76768 -26.72398 -25.91274 -25.14164 -23.15648 -21.73238 -20.80992 -20.57665 -19.80880 -18.57623 -17.63106 -16.71587 -16.09676 -15.92334 -15.52201 -14.88724 -14.64670 -14.37851 -14.10543 -14.02060 -13.76961 -13.59459 -13.35747 -13.20810 -13.14562 -13.07327 -12.67512 -12.46288 -12.30572 -11.67248 -11.62586 -11.50478 -11.32638 -11.08861 -11.03701 -10.86625 -10.70816 -10.62599 -10.24121 -10.13739 -10.03084 -9.91189 -9.70419 -9.43845 -8.94437 -8.77486 -8.48791 -8.41166 -6.49581 -5.81225 -3.36797 1.23772 1.88554 2.20980 2.60370 3.31177 3.36406 3.42060 3.42850 3.45727 4.46700 4.53919 4.61474 4.69319 4.95411 5.01428 5.18166 5.28555 5.29400 5.40039 5.42920 5.54457 5.59202 5.68264 5.86157 5.94175 6.08099 6.09314 6.17941 6.21264 6.31295 6.40885 6.45254 6.47452 6.51873 6.63733 6.70817 6.76359 6.83901 6.92277 6.99063 7.04788 7.30462 7.56752 7.67404 7.80160 8.27085 8.51993 9.22546 9.80368 10.44553 11.26935 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.020859 B = 0.002681 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.023355 B =10442.836123 C =11046.385063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.403 5.403 3 C 0.026 3.974 4 C -0.121 4.121 5 Cl -0.052 7.052 6 C -0.133 4.133 7 C -0.028 4.028 8 C 0.585 3.415 9 O -0.549 6.549 10 N -0.704 5.704 11 C 0.165 3.835 12 H 0.084 0.916 13 C -0.143 4.143 14 C 0.148 3.852 15 N -0.587 5.587 16 C -0.259 4.259 17 H 0.059 0.941 18 C 0.015 3.985 19 N -0.900 5.900 20 Si 0.902 3.098 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.192 3.808 25 C -0.098 4.098 26 C -0.135 4.135 27 C -0.127 4.127 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.111 0.889 31 H 0.177 0.823 32 H 0.152 0.848 33 H 0.399 0.601 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.019 0.981 38 H 0.255 0.745 39 H 0.082 0.918 40 H 0.021 0.979 41 H 0.043 0.957 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.070 0.930 45 H 0.053 0.947 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.656 22.053 -1.586 22.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.075 5.075 3 C -0.110 4.110 4 C -0.154 4.154 5 Cl -0.024 7.024 6 C -0.159 4.159 7 C -0.143 4.143 8 C 0.372 3.628 9 O -0.428 6.428 10 N -0.354 5.354 11 C 0.062 3.938 12 H 0.102 0.898 13 C -0.183 4.183 14 C 0.021 3.979 15 N -0.309 5.309 16 C -0.389 4.389 17 H 0.077 0.923 18 C -0.185 4.185 19 N -0.542 5.542 20 Si 0.731 3.269 21 H -0.208 1.208 22 H -0.216 1.216 23 H -0.209 1.209 24 C 0.065 3.935 25 C -0.100 4.100 26 C -0.193 4.193 27 C -0.185 4.185 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.130 0.870 31 H 0.194 0.806 32 H 0.170 0.830 33 H 0.234 0.766 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.037 0.963 38 H 0.065 0.935 39 H 0.101 0.899 40 H 0.040 0.960 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.072 0.928 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -0.479 21.721 -1.735 21.796 hybrid contribution 1.038 -0.399 0.383 1.176 sum 0.558 21.322 -1.353 21.372 Atomic orbital electron populations 1.22404 0.75074 1.05879 1.04312 1.43797 1.07187 1.04513 1.52012 1.21682 0.88967 0.92185 1.08214 1.19877 0.87945 0.91328 1.16296 1.98325 1.40758 1.65600 1.97700 1.21212 0.95383 0.93199 1.06120 1.20234 0.89520 0.88395 1.16103 1.16882 0.86006 0.83097 0.76859 1.90777 1.16131 1.84611 1.51316 1.46051 1.09441 1.06868 1.73028 1.21067 0.97939 0.77458 0.97313 0.89811 1.22470 1.00999 0.99395 0.95431 1.20891 0.91831 0.87862 0.97295 1.43887 1.45838 1.28758 1.12439 1.18997 1.37490 0.87958 0.94426 0.92302 1.25377 0.99338 0.97186 0.96627 1.69937 1.48376 1.25184 1.10749 0.86408 0.79525 0.81996 0.78965 1.20791 1.21630 1.20857 1.20740 0.98218 0.88328 0.86177 1.21596 0.94842 0.99456 0.94146 1.21776 1.01338 1.00022 0.96144 1.21753 0.96590 0.98553 1.01576 0.90245 0.89735 0.87039 0.80625 0.82995 0.76563 0.91761 0.92968 0.92564 0.96304 0.93464 0.89925 0.96048 0.93792 0.92532 0.93028 0.91086 0.92838 0.95143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.53 10.66 59.85 0.64 1.17 16 2 N -0.40 -4.25 3.16 -120.19 -0.38 -4.63 16 3 C 0.03 0.24 11.36 -16.85 -0.19 0.05 16 4 C -0.12 -1.26 6.66 -39.94 -0.27 -1.53 16 5 Cl -0.05 -0.50 29.30 -51.86 -1.52 -2.02 16 6 C -0.13 -1.47 10.35 -39.09 -0.40 -1.88 16 7 C -0.03 -0.35 6.89 -81.98 -0.56 -0.91 16 8 C 0.59 8.57 7.74 -12.86 -0.10 8.47 16 9 O -0.55 -9.47 14.26 5.19 0.07 -9.40 16 10 N -0.70 -9.85 4.28 -55.07 -0.24 -10.08 16 11 C 0.17 2.77 1.61 -67.89 -0.11 2.67 16 12 H 0.08 1.60 7.51 -51.93 -0.39 1.21 16 13 C -0.14 -2.52 5.31 -26.61 -0.14 -2.66 16 14 C 0.15 3.10 6.52 -3.71 -0.02 3.08 16 15 N -0.59 -14.03 2.38 -172.32 -0.41 -14.44 16 16 C -0.26 -6.83 9.49 -15.06 -0.14 -6.97 16 17 H 0.06 1.54 7.84 -52.49 -0.41 1.13 16 18 C 0.01 0.40 5.11 -17.43 -0.09 0.31 16 19 N -0.90 -25.41 11.42 55.49 0.63 -24.77 16 20 Si 0.90 21.17 29.56 -169.99 -5.02 16.14 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C 0.19 4.30 3.88 -3.71 -0.01 4.29 16 25 C -0.10 -1.69 0.56 -154.39 -0.09 -1.78 16 26 C -0.13 -2.06 8.31 37.16 0.31 -1.75 16 27 C -0.13 -2.08 7.83 37.16 0.29 -1.79 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.11 1.17 6.18 -51.93 -0.32 0.85 16 31 H 0.18 1.05 8.06 -52.48 -0.42 0.62 16 32 H 0.15 1.44 7.45 -52.49 -0.39 1.05 16 33 H 0.40 4.80 5.55 -40.82 -0.23 4.57 16 34 H 0.06 1.12 6.34 -51.93 -0.33 0.79 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.08 2.08 6.60 -51.93 -0.34 1.74 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.04 0.58 7.35 -51.93 -0.38 0.20 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.07 1.30 5.97 -51.93 -0.31 0.99 16 45 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.03 0.40 6.58 -51.93 -0.34 0.06 16 LS Contribution 374.74 15.07 5.65 5.65 Total: -1.00 -29.99 374.74 -8.91 -38.90 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -6.80 Total: 3.90 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -0.90 Total: 0.76 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.39 Total: -53.93 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.07 Total: -9.40 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.52 Total: -2.02 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.99 -8.91 -38.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940875348.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.340 kcal (2) G-P(sol) polarization free energy of solvation -29.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds