Wall clock time and date at job start Sat Apr 11 2020 05:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35626 * 125.67566 * 2 1 4 4 C 1.35516 * 108.85018 * 180.27048 * 3 2 1 5 5 Cl 1.73599 * 126.07363 * 179.74891 * 4 3 2 6 6 C 1.39885 * 107.85085 * 359.76786 * 4 3 2 7 7 C 1.37634 * 125.67338 * 179.87420 * 2 1 3 8 8 C 1.46665 * 126.22600 * 0.02562 * 7 2 1 9 9 O 1.21698 * 120.00172 * 4.36990 * 8 7 2 10 10 N 1.34785 * 120.00097 * 184.37373 * 8 7 2 11 11 C 1.46498 * 119.99922 * 175.79929 * 10 8 7 12 12 H 1.09002 * 109.44941 * 325.03443 * 11 10 8 13 13 C 1.53043 * 109.46014 * 85.00062 * 11 10 8 14 14 C 1.53186 * 109.31350 * 181.38325 * 13 11 10 15 15 N 1.46928 * 108.77632 * 305.36716 * 14 13 11 16 16 C 1.36945 * 120.62830 * 233.58578 * 15 14 13 17 17 H 1.08000 * 119.99574 * 150.35388 * 16 15 14 18 18 C 1.38810 * 119.99949 * 330.34816 * 16 15 14 19 19 N 1.31618 * 119.99881 * 158.13559 * 18 16 15 20 20 Si 1.86799 * 120.00171 * 338.13886 * 18 16 15 21 21 H 1.48496 * 109.47409 * 92.52030 * 20 18 16 22 22 H 1.48500 * 109.46982 * 212.52043 * 20 18 16 23 23 H 1.48500 * 109.47185 * 332.51827 * 20 18 16 24 24 C 1.46920 * 118.73992 * 53.85966 * 15 14 13 25 25 C 1.53038 * 109.45743 * 205.06693 * 11 10 8 26 26 C 1.53005 * 109.50080 * 298.56539 * 25 11 10 27 27 C 1.53002 * 109.49956 * 58.66459 * 25 11 10 28 28 H 1.09000 * 109.47360 * 270.54244 * 1 2 3 29 29 H 1.08999 * 109.47418 * 30.54681 * 1 2 3 30 30 H 1.09008 * 109.47288 * 150.54291 * 1 2 3 31 31 H 1.08001 * 125.57634 * 0.03632 * 3 2 1 32 32 H 1.08005 * 126.45331 * 179.97438 * 6 4 3 33 33 H 0.96993 * 119.99622 * 355.80085 * 10 8 7 34 34 H 1.09000 * 109.49869 * 61.43456 * 13 11 10 35 35 H 1.08994 * 109.52507 * 301.35292 * 13 11 10 36 36 H 1.08998 * 109.59054 * 185.57844 * 14 13 11 37 37 H 1.09004 * 109.58798 * 65.14871 * 14 13 11 38 38 H 0.96993 * 120.00274 * 180.02562 * 19 18 16 39 39 H 1.08999 * 109.59114 * 65.93029 * 24 15 14 40 40 H 1.08997 * 109.58844 * 186.35371 * 24 15 14 41 41 H 1.09002 * 109.46685 * 60.00119 * 26 25 11 42 42 H 1.09000 * 109.46958 * 180.02562 * 26 25 11 43 43 H 1.09000 * 109.46779 * 300.00154 * 26 25 11 44 44 H 1.09002 * 109.46570 * 60.00066 * 27 25 11 45 45 H 1.09001 * 109.47370 * 179.97438 * 27 25 11 46 46 H 1.08994 * 109.46836 * 299.99748 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2560 1.1017 0.0000 4 6 3.5531 0.7095 -0.0061 5 17 4.9377 1.7567 -0.0146 6 6 3.5782 -0.6891 -0.0046 7 6 2.2677 -1.1181 0.0025 8 6 1.8120 -2.5121 0.0050 9 8 0.6241 -2.7642 -0.0753 10 7 2.7088 -3.5142 0.0963 11 6 2.2494 -4.9020 0.1916 12 1 1.3252 -4.9395 0.7682 13 6 1.9963 -5.4529 -1.2136 14 6 1.4832 -6.8924 -1.1086 15 7 2.4382 -7.6782 -0.3153 16 6 2.9612 -8.8442 -0.8076 17 1 3.9481 -9.1629 -0.5063 18 6 2.2226 -9.6165 -1.6935 19 7 2.8323 -10.4697 -2.4890 20 14 0.3636 -9.4449 -1.7569 21 1 -0.0063 -8.4455 -2.7911 22 1 -0.2433 -10.7569 -2.0970 23 1 -0.1375 -8.9960 -0.4331 24 6 2.8168 -7.1924 1.0186 25 6 3.3193 -5.7465 0.8874 26 6 4.6065 -5.7226 0.0606 27 6 3.5952 -5.1752 2.2797 28 1 -0.3634 0.0097 1.0276 29 1 -0.3634 0.8850 -0.5223 30 1 -0.3634 -0.8949 -0.5054 31 1 1.9089 2.1244 0.0006 32 1 4.4582 -1.3152 -0.0087 33 1 3.6584 -3.3163 0.0989 34 1 2.9258 -5.4386 -1.7829 35 1 1.2516 -4.8371 -1.7177 36 1 1.3956 -7.3229 -2.1062 37 1 0.5094 -6.8985 -0.6189 38 1 2.3163 -11.0091 -3.1084 39 1 1.9496 -7.2224 1.6782 40 1 3.6094 -7.8206 1.4249 41 1 4.9590 -4.6954 -0.0332 42 1 5.3680 -6.3246 0.5564 43 1 4.4093 -6.1310 -0.9305 44 1 2.6780 -5.1941 2.8684 45 1 4.3569 -5.7773 2.7751 46 1 3.9469 -4.1477 2.1877 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940875349.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:50 Heat of formation + Delta-G solvation = 10.142816 kcal Electronic energy + Delta-G solvation = -28267.093386 eV Core-core repulsion = 24411.332591 eV Total energy + Delta-G solvation = -3855.760795 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.54518 -41.15179 -39.37507 -37.34321 -36.48688 -34.74461 -33.67678 -33.59101 -32.09923 -30.22129 -28.15916 -27.85193 -27.43480 -26.74030 -24.38247 -23.07852 -22.84957 -21.61956 -20.92320 -19.76625 -18.97132 -18.58121 -17.46304 -17.12483 -16.76500 -16.52594 -15.96331 -15.72184 -15.51952 -15.44577 -15.19394 -14.93750 -14.79793 -14.53342 -14.34004 -14.00977 -13.93105 -13.85073 -13.77443 -13.29469 -13.16879 -12.99002 -12.74031 -12.64506 -12.45535 -12.39465 -12.20086 -12.04597 -11.88344 -11.80234 -11.57386 -11.44417 -11.25491 -11.02112 -10.68515 -10.10887 -9.72145 -9.25906 -8.88843 -8.16835 -5.47691 0.33378 1.14375 1.29545 1.39682 1.43205 1.48297 1.71264 2.24965 2.41111 2.41938 3.04658 3.34739 3.59101 3.70661 3.86630 3.90189 3.99535 4.03190 4.23836 4.24322 4.33730 4.37154 4.47932 4.50875 4.53746 4.70860 4.74043 4.79236 4.87163 4.91144 4.92858 4.94557 5.02946 5.11139 5.17545 5.22507 5.29002 5.36475 5.42453 5.49703 5.67417 5.70852 5.90201 6.03316 6.15828 6.50132 6.92647 7.13593 7.63014 8.05686 9.03011 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.018563 B = 0.002917 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.004288 B = 9595.006081 C =10266.948127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.407 5.407 3 C 0.047 3.953 4 C -0.141 4.141 5 Cl -0.046 7.046 6 C -0.124 4.124 7 C -0.060 4.060 8 C 0.587 3.413 9 O -0.579 6.579 10 N -0.694 5.694 11 C 0.178 3.822 12 H 0.070 0.930 13 C -0.133 4.133 14 C 0.130 3.870 15 N -0.612 5.612 16 C -0.238 4.238 17 H 0.059 0.941 18 C -0.027 4.027 19 N -0.952 5.952 20 Si 0.932 3.068 21 H -0.281 1.281 22 H -0.310 1.310 23 H -0.266 1.266 24 C 0.155 3.845 25 C -0.079 4.079 26 C -0.129 4.129 27 C -0.131 4.131 28 H 0.087 0.913 29 H 0.117 0.883 30 H 0.085 0.915 31 H 0.210 0.790 32 H 0.166 0.834 33 H 0.412 0.588 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.049 0.951 37 H 0.023 0.977 38 H 0.260 0.740 39 H 0.029 0.971 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.043 0.957 44 H 0.052 0.948 45 H 0.068 0.932 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.565 27.723 8.478 28.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.079 5.079 3 C -0.091 4.091 4 C -0.174 4.174 5 Cl -0.018 7.018 6 C -0.150 4.150 7 C -0.174 4.174 8 C 0.375 3.625 9 O -0.461 6.461 10 N -0.345 5.345 11 C 0.073 3.927 12 H 0.088 0.912 13 C -0.173 4.173 14 C 0.004 3.996 15 N -0.335 5.335 16 C -0.367 4.367 17 H 0.077 0.923 18 C -0.222 4.222 19 N -0.598 5.598 20 Si 0.761 3.239 21 H -0.208 1.208 22 H -0.239 1.239 23 H -0.190 1.190 24 C 0.030 3.970 25 C -0.081 4.081 26 C -0.186 4.186 27 C -0.188 4.188 28 H 0.105 0.895 29 H 0.136 0.864 30 H 0.104 0.896 31 H 0.227 0.773 32 H 0.184 0.816 33 H 0.250 0.750 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.041 0.959 38 H 0.070 0.930 39 H 0.047 0.953 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.071 0.929 45 H 0.087 0.913 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.566 27.454 8.348 28.701 hybrid contribution -0.481 -0.578 -0.565 0.940 sum -1.047 26.876 7.783 28.000 Atomic orbital electron populations 1.22494 0.74108 1.06193 1.04968 1.44015 1.07922 1.04381 1.51602 1.22269 0.88490 0.93113 1.05215 1.20020 0.88733 0.91324 1.17301 1.98331 1.40482 1.65248 1.97727 1.21446 0.95248 0.93893 1.04447 1.19894 0.90416 0.87662 1.19420 1.17159 0.85417 0.84055 0.75847 1.90777 1.17558 1.85265 1.52527 1.45700 1.10160 1.05260 1.73407 1.20678 0.97405 0.79237 0.95333 0.91228 1.22292 1.01507 0.95762 0.97788 1.21217 0.91881 0.91440 0.95061 1.44436 1.51602 1.22763 1.14735 1.18820 0.97735 0.97569 1.22619 0.92309 1.25837 1.00894 0.97011 0.98496 1.69955 1.36405 1.29498 1.23952 0.86097 0.84019 0.75274 0.78467 1.20805 1.23882 1.19047 1.21265 0.97835 0.92734 0.85177 1.21283 0.95079 0.95146 0.96601 1.21746 0.95615 1.01384 0.99859 1.21758 1.01946 1.01297 0.93846 0.89489 0.86418 0.89646 0.77291 0.81614 0.74970 0.91169 0.92447 0.93277 0.95920 0.93047 0.95255 0.91522 0.91211 0.92491 0.93822 0.92915 0.91260 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.86 10.64 127.77 1.36 2.22 16 2 N -0.41 -7.15 3.16 -534.16 -1.69 -8.84 16 3 C 0.05 0.66 11.36 83.48 0.95 1.60 16 4 C -0.14 -2.36 6.66 22.04 0.15 -2.21 16 5 Cl -0.05 -0.72 29.30 -2.72 -0.08 -0.80 16 6 C -0.12 -2.24 10.35 22.59 0.23 -2.00 16 7 C -0.06 -1.29 6.89 40.35 0.28 -1.02 16 8 C 0.59 15.41 7.74 86.44 0.67 16.08 16 9 O -0.58 -18.90 14.33 -4.34 -0.06 -18.96 16 10 N -0.69 -16.54 4.27 -446.37 -1.91 -18.44 16 11 C 0.18 5.28 1.54 45.02 0.07 5.35 16 12 H 0.07 2.31 7.64 -2.39 -0.02 2.29 16 13 C -0.13 -4.74 5.31 30.67 0.16 -4.57 16 14 C 0.13 5.64 4.23 86.36 0.37 6.01 16 15 N -0.61 -27.85 2.15 -698.26 -1.50 -29.36 16 16 C -0.24 -13.09 9.99 84.03 0.84 -12.25 16 17 H 0.06 3.49 8.06 -2.91 -0.02 3.47 16 18 C -0.03 -1.58 5.18 84.86 0.44 -1.14 16 19 N -0.95 -59.45 13.97 21.65 0.30 -59.15 16 20 Si 0.93 47.25 24.45 68.60 1.68 48.92 16 21 H -0.28 -13.78 6.65 99.48 0.66 -13.12 16 22 H -0.31 -15.96 7.11 99.48 0.71 -15.25 16 23 H -0.27 -13.08 6.86 99.48 0.68 -12.40 16 24 C 0.16 5.64 5.24 86.51 0.45 6.09 16 25 C -0.08 -2.20 0.56 -51.95 -0.03 -2.23 16 26 C -0.13 -3.52 7.84 71.98 0.56 -2.95 16 27 C -0.13 -2.77 8.31 71.98 0.60 -2.17 16 28 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.08 1.68 6.21 -2.38 -0.01 1.66 16 31 H 0.21 1.36 8.06 -2.91 -0.02 1.34 16 32 H 0.17 2.36 7.45 -2.91 -0.02 2.34 16 33 H 0.41 7.70 5.56 -92.71 -0.52 7.19 16 34 H 0.07 2.51 6.34 -2.39 -0.02 2.50 16 35 H 0.06 2.05 8.13 -2.39 -0.02 2.03 16 36 H 0.05 2.38 4.88 -2.39 -0.01 2.36 16 37 H 0.02 1.00 7.19 -2.38 -0.02 0.98 16 38 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 39 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 2.43 7.93 -2.39 -0.02 2.41 16 41 H 0.07 1.42 6.58 -2.39 -0.02 1.40 16 42 H 0.06 1.53 8.14 -2.39 -0.02 1.52 16 43 H 0.04 1.51 5.97 -2.39 -0.01 1.49 16 44 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.07 1.24 7.36 -2.39 -0.02 1.22 16 Total: -1.00 -70.54 368.59 4.25 -66.29 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.42 Total: 13.54 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 7.10 Total: 6.80 kcal Atomic # 7 Polarization: -110.99 SS G_CDS: -4.80 Total: -115.79 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.06 Total: -18.96 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 1.68 Total: 48.92 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.08 Total: -0.80 kcal Total: -70.54 4.25 -66.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940875349.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.431 kcal (2) G-P(sol) polarization free energy of solvation -70.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds