Wall clock time and date at job start Sat Apr 11 2020 05:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99734 * 2 1 4 4 H 1.48494 * 109.47550 * 270.00078 * 3 2 1 5 5 H 1.48501 * 109.47411 * 30.00280 * 3 2 1 6 6 H 1.48504 * 109.46856 * 149.99810 * 3 2 1 7 7 C 1.38808 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00362 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99940 * 359.97438 * 7 2 1 10 10 C 1.51826 * 127.61033 * 359.67089 * 9 7 2 11 11 C 1.54391 * 102.86597 * 140.54207 * 10 9 7 12 12 H 1.09002 * 117.61671 * 243.59303 * 11 10 9 13 13 C 1.54285 * 106.22189 * 24.11779 * 11 10 9 14 14 H 1.09007 * 121.81562 * 221.52879 * 13 11 10 15 15 C 1.48144 * 127.83598 * 179.97438 * 9 7 2 16 16 C 1.52992 * 59.72383 * 113.48963 * 13 11 10 17 17 H 1.09003 * 117.44347 * 252.34940 * 16 13 11 18 18 N 1.46497 * 117.40891 * 107.66215 * 16 13 11 19 19 C 1.34773 * 120.00197 * 135.77194 * 18 16 13 20 20 O 1.21521 * 120.00223 * 0.02562 * 19 18 16 21 21 C 1.48186 * 120.00434 * 180.02562 * 19 18 16 22 22 C 1.39120 * 119.69545 * 179.97438 * 21 19 18 23 23 C 1.39275 * 118.97772 * 179.97438 * 22 21 19 24 24 N 1.39959 * 120.82570 * 180.02562 * 23 22 21 25 25 C 1.37155 * 126.48432 * 180.02562 * 24 23 22 26 26 C 1.34624 * 106.82776 * 179.97438 * 25 24 23 27 27 N 1.34150 * 108.21388 * 359.97438 * 26 25 24 28 28 C 1.30486 * 109.36262 * 359.74677 * 27 26 25 29 29 C 1.39274 * 118.35551 * 0.02562 * 23 22 21 30 30 C 1.38342 * 119.27919 * 359.97438 * 29 23 22 31 31 N 1.31601 * 120.97672 * 359.72274 * 30 29 23 32 32 H 0.96995 * 119.99945 * 359.97438 * 1 2 3 33 33 H 1.08992 * 112.26519 * 21.85572 * 10 9 7 34 34 H 1.08999 * 110.21712 * 258.26579 * 10 9 7 35 35 H 1.09002 * 110.40706 * 100.80382 * 15 9 7 36 36 H 1.09001 * 110.41178 * 338.37370 * 15 9 7 37 37 H 0.97005 * 120.00004 * 315.77445 * 18 16 13 38 38 H 1.08001 * 120.51238 * 0.02791 * 22 21 19 39 39 H 1.07992 * 126.58578 * 359.95424 * 25 24 23 40 40 H 1.08007 * 125.89514 * 179.97438 * 26 25 24 41 41 H 1.08002 * 125.71699 * 180.27323 * 28 27 26 42 42 H 1.08001 * 120.36087 * 180.02562 * 29 23 22 43 43 H 1.07997 * 119.51510 * 180.02562 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1793 -2.5892 0.0069 11 6 -0.3713 -3.7836 -0.9523 12 1 -0.9350 -3.6100 -1.8689 13 6 0.9649 -4.5550 -0.9529 14 1 1.3965 -4.9560 -1.8700 15 6 1.8845 -3.7600 -0.0016 16 6 -0.2957 -5.1961 -0.3693 17 1 -0.3528 -5.2960 0.7147 18 7 -0.9194 -6.2773 -1.1363 19 6 -1.3385 -7.3939 -0.5086 20 8 -1.1996 -7.5037 0.6936 21 6 -1.9688 -8.4878 -1.2845 22 6 -2.3987 -9.6378 -0.6301 23 6 -2.9896 -10.6564 -1.3738 24 7 -3.4365 -11.8296 -0.7551 25 6 -4.0311 -12.9009 -1.3713 26 6 -4.2981 -13.8047 -0.4099 27 7 -3.8800 -13.3051 0.7629 28 6 -3.3570 -12.1255 0.5688 29 6 -3.1248 -10.4786 -2.7486 30 6 -2.6725 -9.3062 -3.3269 31 7 -2.1235 -8.3587 -2.5970 32 1 -0.4850 0.8400 0.0004 33 1 -0.7146 -1.7148 -0.3630 34 1 -0.5197 -2.8483 1.0094 35 1 1.8513 -4.1847 1.0018 36 1 2.9071 -3.7537 -0.3789 37 1 -1.0306 -6.1896 -2.0959 38 1 -2.2768 -9.7388 0.4382 39 1 -4.2445 -13.0003 -2.4253 40 1 -4.7679 -14.7660 -0.5572 41 1 -2.9343 -11.4898 1.3328 42 1 -3.5787 -11.2474 -3.3564 43 1 -2.7758 -9.1641 -4.3925 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962197697.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:46 Heat of formation + Delta-G solvation = 126.202848 kcal Electronic energy + Delta-G solvation = -27242.547238 eV Core-core repulsion = 23290.711689 eV Total energy + Delta-G solvation = -3951.835549 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.47147 -41.75140 -40.64137 -39.51702 -36.20728 -35.91490 -34.35117 -32.89634 -32.06816 -31.53034 -30.51123 -28.83434 -27.76732 -26.10527 -25.32473 -23.73898 -22.77276 -22.07860 -21.93803 -21.49242 -20.81516 -19.99412 -18.90487 -18.21226 -17.90349 -17.08864 -16.96871 -16.79741 -16.65014 -16.21915 -16.00164 -15.57374 -15.33518 -15.11442 -14.94232 -14.88453 -14.66994 -14.57822 -14.36920 -13.79538 -13.26098 -13.14233 -13.08912 -13.01180 -12.72026 -12.42840 -12.12698 -11.99705 -11.75040 -11.67995 -11.58512 -11.27816 -10.98866 -10.85018 -10.67322 -10.53186 -10.21326 -9.77129 -9.62232 -8.96373 -7.75572 -5.22904 -0.69892 -0.36630 1.08257 1.34506 1.49031 1.50864 1.56409 1.59487 1.79456 2.02606 2.49816 2.61139 2.86804 2.89993 3.29258 3.34848 3.42489 3.54145 3.61490 3.75732 3.77701 3.83334 3.90061 4.04165 4.13920 4.33181 4.36262 4.45177 4.47861 4.51338 4.54970 4.67758 4.76991 4.89250 4.98499 5.13570 5.25803 5.27350 5.36126 5.46214 5.48125 5.64341 5.77849 6.00915 6.24532 6.27483 6.62002 6.87443 6.98123 7.02744 7.69745 8.44379 9.26066 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034828 B = 0.001804 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.753212 B =15520.198337 C =15885.138175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.070 4.070 3 Si 0.984 3.016 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.272 1.272 7 C -0.230 4.230 8 H 0.085 0.915 9 N -0.625 5.625 10 C 0.154 3.846 11 C -0.171 4.171 12 H 0.119 0.881 13 C -0.168 4.168 14 H 0.131 0.869 15 C 0.154 3.846 16 C 0.112 3.888 17 H 0.114 0.886 18 N -0.663 5.663 19 C 0.570 3.430 20 O -0.564 6.564 21 C 0.098 3.902 22 C -0.136 4.136 23 C 0.169 3.831 24 N -0.418 5.418 25 C -0.041 4.041 26 C -0.042 4.042 27 N -0.517 5.517 28 C 0.180 3.820 29 C -0.146 4.146 30 C 0.134 3.866 31 N -0.476 5.476 32 H 0.249 0.751 33 H 0.109 0.891 34 H -0.001 1.001 35 H 0.025 0.975 36 H 0.063 0.937 37 H 0.422 0.578 38 H 0.151 0.849 39 H 0.223 0.777 40 H 0.197 0.803 41 H 0.222 0.778 42 H 0.190 0.810 43 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.455 -27.186 -11.723 31.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.262 4.262 3 Si 0.813 3.187 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.197 1.197 7 C -0.359 4.359 8 H 0.103 0.897 9 N -0.350 5.350 10 C 0.029 3.971 11 C -0.192 4.192 12 H 0.137 0.863 13 C -0.189 4.189 14 H 0.149 0.851 15 C 0.028 3.972 16 C 0.005 3.995 17 H 0.131 0.869 18 N -0.311 5.311 19 C 0.356 3.644 20 O -0.443 6.443 21 C -0.039 4.039 22 C -0.159 4.159 23 C 0.068 3.932 24 N -0.099 5.099 25 C -0.169 4.169 26 C -0.186 4.186 27 N -0.234 5.234 28 C -0.101 4.101 29 C -0.167 4.167 30 C -0.026 4.026 31 N -0.189 5.189 32 H 0.059 0.941 33 H 0.127 0.873 34 H 0.017 0.983 35 H 0.043 0.957 36 H 0.081 0.919 37 H 0.260 0.740 38 H 0.169 0.831 39 H 0.239 0.761 40 H 0.214 0.786 41 H 0.238 0.762 42 H 0.207 0.793 43 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -9.096 -26.579 -10.495 29.988 hybrid contribution 0.117 0.738 -0.185 0.770 sum -8.978 -25.840 -10.680 29.366 Atomic orbital electron populations 1.69739 1.06230 1.25035 1.58943 1.25607 0.96624 1.00907 1.03080 0.84984 0.77447 0.78826 0.77489 1.21117 1.22135 1.19658 1.19492 0.90977 0.83343 1.42055 0.89739 1.46427 1.02110 1.00500 1.85935 1.22312 0.84874 0.96180 0.93685 1.24321 1.01367 0.90893 1.02663 0.86279 1.24307 0.90169 1.01896 1.02535 0.85137 1.21205 0.95950 0.84321 0.95709 1.21560 0.97135 0.85189 0.95608 0.86867 1.45038 1.58473 1.15290 1.12341 1.18161 0.77850 0.82027 0.86403 1.90793 1.57632 1.80559 1.15266 1.20533 0.99302 0.93323 0.90757 1.21730 0.99091 0.92528 1.02573 1.18042 0.96426 0.85354 0.93424 1.43301 1.44563 1.13148 1.08839 1.23479 1.03957 0.87320 1.02136 1.22942 1.05733 1.02260 0.87662 1.70356 1.15409 1.08673 1.28946 1.25770 1.03678 0.95755 0.84934 1.22586 1.00951 1.01448 0.91743 1.23490 0.90327 0.86731 1.02015 1.67604 1.13821 1.32491 1.04965 0.94131 0.87341 0.98275 0.95730 0.91901 0.73984 0.83138 0.76082 0.78583 0.76209 0.79319 0.76797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.07 10.12 21.65 0.22 -55.85 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 3 Si 0.98 45.41 29.55 68.60 2.03 47.43 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 7 C -0.23 -12.86 10.42 84.03 0.88 -11.98 16 8 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 9 N -0.62 -32.44 3.46 -678.24 -2.35 -34.79 16 10 C 0.15 7.62 6.43 85.80 0.55 8.17 16 11 C -0.17 -6.51 6.96 -9.89 -0.07 -6.58 16 12 H 0.12 4.14 8.14 -2.39 -0.02 4.12 16 13 C -0.17 -5.85 7.05 -9.90 -0.07 -5.92 16 14 H 0.13 3.89 8.14 -2.38 -0.02 3.87 16 15 C 0.15 6.44 7.05 86.52 0.61 7.05 16 16 C 0.11 3.74 5.97 44.99 0.27 4.01 16 17 H 0.11 4.32 7.40 -2.39 -0.02 4.30 16 18 N -0.66 -17.96 5.55 -445.09 -2.47 -20.43 16 19 C 0.57 15.97 7.81 86.89 0.68 16.65 16 20 O -0.56 -19.63 15.89 -3.78 -0.06 -19.69 16 21 C 0.10 2.05 6.75 41.86 0.28 2.33 16 22 C -0.14 -2.44 9.06 22.73 0.21 -2.24 16 23 C 0.17 2.17 6.67 38.34 0.26 2.42 16 24 N -0.42 -5.64 2.99 -349.80 -1.04 -6.68 16 25 C -0.04 -0.38 10.89 83.03 0.90 0.52 16 26 C -0.04 -0.57 11.85 83.51 0.99 0.42 16 27 N -0.52 -10.38 11.24 -199.68 -2.25 -12.63 16 28 C 0.18 3.08 11.95 179.99 2.15 5.23 16 29 C -0.15 -0.92 9.55 22.54 0.22 -0.71 16 30 C 0.13 1.05 11.17 84.75 0.95 2.00 16 31 N -0.48 -7.69 9.54 -185.12 -1.77 -9.46 16 32 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 33 H 0.11 6.06 5.34 -2.39 -0.01 6.04 16 34 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 35 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.42 9.55 8.15 -92.70 -0.76 8.79 16 38 H 0.15 2.80 6.49 -2.91 -0.02 2.79 16 39 H 0.22 -0.02 7.22 -2.91 -0.02 -0.04 16 40 H 0.20 1.58 8.06 -2.91 -0.02 1.56 16 41 H 0.22 3.00 7.15 -2.91 -0.02 2.97 16 42 H 0.19 -0.35 6.94 -2.91 -0.02 -0.37 16 43 H 0.22 -0.09 8.06 -2.91 -0.02 -0.11 16 Total: -1.00 -77.18 366.41 1.89 -75.29 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.32 Total: 18.93 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: 9.26 Total: 17.88 kcal Atomic # 7 Polarization: -130.19 SS G_CDS: -9.66 Total: -139.84 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.06 Total: -19.69 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -77.18 1.89 -75.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962197697.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.492 kcal (2) G-P(sol) polarization free energy of solvation -77.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds