Wall clock time and date at job start Sat Apr 11 2020 05:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99734 * 2 1 4 4 H 1.48505 * 109.47106 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47548 * 300.00029 * 3 2 1 6 6 H 1.48507 * 109.47147 * 60.00375 * 3 2 1 7 7 C 1.38808 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00362 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99940 * 359.97438 * 7 2 1 10 10 C 1.51826 * 127.61033 * 359.67089 * 9 7 2 11 11 C 1.54391 * 102.86597 * 140.54207 * 10 9 7 12 12 H 1.09002 * 117.61671 * 243.59303 * 11 10 9 13 13 C 1.54285 * 106.22189 * 24.11779 * 11 10 9 14 14 H 1.09007 * 121.81562 * 221.52879 * 13 11 10 15 15 C 1.48144 * 127.83598 * 179.97438 * 9 7 2 16 16 C 1.52992 * 59.72383 * 113.48963 * 13 11 10 17 17 H 1.09003 * 117.44347 * 252.34940 * 16 13 11 18 18 N 1.46497 * 117.40891 * 107.66215 * 16 13 11 19 19 C 1.34773 * 120.00197 * 135.77194 * 18 16 13 20 20 O 1.21556 * 120.00244 * 0.02562 * 19 18 16 21 21 C 1.47857 * 120.00346 * 179.97438 * 19 18 16 22 22 C 1.39623 * 120.11118 * 0.02562 * 21 19 18 23 23 C 1.37971 * 119.98437 * 179.97438 * 22 21 19 24 24 C 1.38270 * 120.21669 * 359.97438 * 23 22 21 25 25 C 1.38901 * 120.22689 * 0.02562 * 24 23 22 26 26 N 1.40278 * 119.99227 * 179.97438 * 25 24 23 27 27 C 1.36111 * 125.94415 * 4.71061 * 26 25 24 28 28 C 1.35361 * 106.05084 * 179.84694 * 27 26 25 29 29 N 1.33778 * 106.53854 * 0.41066 * 28 27 26 30 30 N 1.28605 * 109.05950 * 359.73558 * 29 28 27 31 31 C 1.38587 * 120.01441 * 359.73704 * 25 24 23 32 32 H 0.96995 * 119.99945 * 359.97438 * 1 2 3 33 33 H 1.08992 * 112.26519 * 21.85572 * 10 9 7 34 34 H 1.08999 * 110.21712 * 258.26579 * 10 9 7 35 35 H 1.09002 * 110.40706 * 100.80382 * 15 9 7 36 36 H 1.09001 * 110.41178 * 338.37370 * 15 9 7 37 37 H 0.97005 * 120.00004 * 315.77445 * 18 16 13 38 38 H 1.07997 * 120.00812 * 359.94790 * 22 21 19 39 39 H 1.07996 * 119.89398 * 180.02562 * 23 22 21 40 40 H 1.07997 * 119.88777 * 180.02562 * 24 23 22 41 41 H 1.08002 * 126.97289 * 0.02562 * 27 26 25 42 42 H 1.08007 * 126.73409 * 180.14318 * 28 27 26 43 43 H 1.08000 * 120.10862 * 180.27556 * 31 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1793 -2.5892 0.0069 11 6 -0.3713 -3.7836 -0.9523 12 1 -0.9350 -3.6100 -1.8689 13 6 0.9649 -4.5550 -0.9529 14 1 1.3965 -4.9560 -1.8700 15 6 1.8845 -3.7600 -0.0016 16 6 -0.2957 -5.1961 -0.3693 17 1 -0.3528 -5.2960 0.7147 18 7 -0.9194 -6.2773 -1.1363 19 6 -1.3385 -7.3939 -0.5086 20 8 -1.1995 -7.5038 0.6940 21 6 -1.9685 -8.4849 -1.2826 22 6 -2.1298 -8.3611 -2.6639 23 6 -2.7175 -9.3810 -3.3837 24 6 -3.1477 -10.5275 -2.7417 25 6 -2.9916 -10.6601 -1.3678 26 7 -3.4303 -11.8252 -0.7214 27 6 -3.9397 -12.9320 -1.3282 28 6 -4.2261 -13.8053 -0.3344 29 7 -3.8939 -13.2004 0.8116 30 7 -3.4264 -12.0313 0.5492 31 6 -2.3981 -9.6436 -0.6363 32 1 -0.4850 0.8400 0.0004 33 1 -0.7146 -1.7148 -0.3630 34 1 -0.5197 -2.8483 1.0094 35 1 1.8513 -4.1847 1.0018 36 1 2.9071 -3.7537 -0.3789 37 1 -1.0306 -6.1896 -2.0959 38 1 -1.7950 -7.4670 -3.1688 39 1 -2.8412 -9.2838 -4.4521 40 1 -3.6067 -11.3227 -3.3103 41 1 -4.0832 -13.0838 -2.3878 42 1 -4.6452 -14.7946 -0.4447 43 1 -2.2719 -9.7470 0.4313 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963068431.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:07 Heat of formation + Delta-G solvation = 175.682733 kcal Electronic energy + Delta-G solvation = -27239.979274 eV Core-core repulsion = 23290.289334 eV Total energy + Delta-G solvation = -3949.689940 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.85156 -40.61430 -39.22068 -38.08605 -35.18457 -34.47898 -32.80667 -32.16304 -31.25069 -30.61855 -29.93826 -27.09914 -25.95598 -24.93600 -24.64019 -23.00786 -21.88134 -21.63564 -20.66998 -20.36957 -19.28332 -19.06771 -17.22109 -16.93468 -16.92072 -16.86797 -16.45326 -15.59417 -15.35755 -15.02227 -14.74623 -14.71175 -14.35287 -14.25439 -13.61620 -13.46841 -13.30223 -12.76129 -12.65038 -12.42509 -12.22306 -11.87406 -11.61175 -11.46075 -11.41130 -11.37751 -11.14345 -10.88962 -10.39355 -10.24390 -10.11361 -10.06816 -9.92514 -9.71412 -9.70153 -9.25252 -9.22471 -8.85250 -8.43938 -6.95936 -5.69942 -3.13992 -0.05215 0.38546 1.41212 1.73254 2.12527 2.50246 2.88195 3.31060 3.37287 3.42651 3.45148 3.81763 3.97364 4.13010 4.28347 4.38348 4.41340 4.41907 4.44682 4.61282 4.72916 4.78289 5.02509 5.10544 5.24044 5.30878 5.36447 5.51160 5.54206 5.57636 5.63468 5.71165 5.76304 5.85484 5.91437 6.06501 6.19752 6.30570 6.49279 6.63662 6.72558 6.84226 7.28043 7.40062 7.51687 7.75487 8.01265 8.07100 8.23641 9.08921 9.73096 10.43778 11.33640 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034356 B = 0.001801 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.801242 B =15546.512170 C =15920.672602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.015 4.015 3 Si 0.918 3.082 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.214 4.214 8 H 0.081 0.919 9 N -0.601 5.601 10 C 0.155 3.845 11 C -0.169 4.169 12 H 0.102 0.898 13 C -0.183 4.183 14 H 0.103 0.897 15 C 0.160 3.840 16 C 0.090 3.910 17 H 0.133 0.867 18 N -0.688 5.688 19 C 0.557 3.443 20 O -0.525 6.525 21 C -0.105 4.105 22 C -0.077 4.077 23 C -0.102 4.102 24 C -0.096 4.096 25 C 0.112 3.888 26 N -0.242 5.242 27 C -0.051 4.051 28 C -0.044 4.044 29 N -0.262 5.262 30 N -0.072 5.072 31 C -0.043 4.043 32 H 0.253 0.747 33 H 0.137 0.863 34 H 0.019 0.981 35 H 0.028 0.972 36 H 0.052 0.948 37 H 0.398 0.602 38 H 0.139 0.861 39 H 0.146 0.854 40 H 0.140 0.860 41 H 0.195 0.805 42 H 0.196 0.804 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.122 -24.659 -12.201 28.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.210 4.210 3 Si 0.749 3.251 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.342 4.342 8 H 0.098 0.902 9 N -0.325 5.325 10 C 0.031 3.969 11 C -0.190 4.190 12 H 0.120 0.880 13 C -0.205 4.205 14 H 0.121 0.879 15 C 0.033 3.967 16 C -0.015 4.015 17 H 0.151 0.849 18 N -0.337 5.337 19 C 0.344 3.656 20 O -0.401 6.401 21 C -0.109 4.109 22 C -0.096 4.096 23 C -0.121 4.121 24 C -0.117 4.117 25 C 0.021 3.979 26 N -0.030 5.030 27 C -0.199 4.199 28 C -0.199 4.199 29 N -0.128 5.128 30 N -0.050 5.050 31 C -0.063 4.063 32 H 0.064 0.936 33 H 0.155 0.845 34 H 0.037 0.963 35 H 0.045 0.955 36 H 0.070 0.930 37 H 0.233 0.767 38 H 0.157 0.843 39 H 0.164 0.836 40 H 0.158 0.842 41 H 0.212 0.788 42 H 0.213 0.787 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.671 -23.910 -9.882 27.286 hybrid contribution 0.076 0.255 -1.884 1.903 sum -8.595 -23.655 -11.766 27.783 Atomic orbital electron populations 1.69485 1.04974 1.24699 1.58037 1.24762 0.95713 0.97740 1.02755 0.85936 0.78589 0.83343 0.77259 1.20520 1.21768 1.21707 1.19164 0.90440 0.82128 1.42449 0.90151 1.46140 1.01318 0.99405 1.85648 1.22575 0.85452 0.95149 0.93745 1.24658 0.99726 0.91644 1.02996 0.87970 1.24394 0.91151 1.02573 1.02385 0.87922 1.21080 0.94809 0.85795 0.95026 1.21999 0.97803 0.85359 0.96380 0.84942 1.45286 1.60426 1.16812 1.11167 1.18001 0.78559 0.81826 0.87260 1.90828 1.55555 1.79752 1.13990 1.19913 1.01998 0.95171 0.93848 1.21579 0.96046 0.99264 0.92749 1.20987 0.98022 0.92239 1.00834 1.21075 0.99931 0.99488 0.91208 1.17493 1.03064 0.85575 0.91773 1.44777 1.40104 1.11905 1.06183 1.23845 1.06127 0.87757 1.02144 1.23703 1.05799 1.02250 0.88171 1.75178 1.12656 0.99875 1.25113 1.78500 1.18628 1.13275 0.94630 1.21075 0.93189 0.90050 1.02012 0.93595 0.84547 0.96317 0.95457 0.92964 0.76666 0.84283 0.83610 0.84248 0.78831 0.78698 0.82452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.31 10.12 55.49 0.56 -25.75 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.92 21.74 29.55 -169.99 -5.02 16.72 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.21 -5.86 10.42 -15.06 -0.16 -6.02 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.60 -15.18 3.46 -165.73 -0.57 -15.76 16 10 C 0.16 3.66 6.43 -0.29 0.00 3.66 16 11 C -0.17 -3.11 6.96 -89.22 -0.62 -3.73 16 12 H 0.10 1.72 8.14 -51.93 -0.42 1.29 16 13 C -0.18 -3.19 7.05 -89.24 -0.63 -3.82 16 14 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 15 C 0.16 3.32 7.05 -2.43 -0.02 3.30 16 16 C 0.09 1.47 5.97 -67.94 -0.41 1.07 16 17 H 0.13 2.47 7.40 -51.93 -0.38 2.09 16 18 N -0.69 -8.72 5.51 -54.75 -0.30 -9.02 16 19 C 0.56 7.65 7.77 -12.33 -0.10 7.56 16 20 O -0.52 -9.43 15.91 5.32 0.08 -9.34 16 21 C -0.11 -1.08 5.87 -104.99 -0.62 -1.69 16 22 C -0.08 -0.50 9.54 -39.16 -0.37 -0.88 16 23 C -0.10 -0.47 10.02 -39.67 -0.40 -0.87 16 24 C -0.10 -0.51 9.45 -39.32 -0.37 -0.88 16 25 C 0.11 0.98 6.67 -83.62 -0.56 0.43 16 26 N -0.24 -2.36 3.56 -10.50 -0.04 -2.40 16 27 C -0.05 -0.33 10.91 -16.68 -0.18 -0.51 16 28 C -0.04 -0.33 12.05 -17.73 -0.21 -0.55 16 29 N -0.26 -3.17 12.39 30.24 0.37 -2.79 16 30 N -0.07 -0.92 12.42 60.35 0.75 -0.17 16 31 C -0.04 -0.46 9.16 -39.00 -0.36 -0.82 16 32 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.14 3.60 5.34 -51.93 -0.28 3.32 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.40 3.69 6.86 -40.82 -0.28 3.41 16 38 H 0.14 0.60 6.40 -52.49 -0.34 0.27 16 39 H 0.15 0.23 8.06 -52.49 -0.42 -0.19 16 40 H 0.14 0.29 6.77 -52.49 -0.36 -0.06 16 41 H 0.19 0.33 7.12 -52.49 -0.37 -0.04 16 42 H 0.20 0.71 8.06 -52.48 -0.42 0.29 16 43 H 0.16 2.04 7.29 -52.49 -0.38 1.65 16 LS Contribution 365.22 15.07 5.50 5.50 Total: -1.00 -35.36 365.22 -8.65 -44.01 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -4.89 Total: 3.26 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -5.09 Total: -4.26 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 0.77 Total: -55.90 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.08 Total: -9.34 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.36 -8.65 -44.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963068431.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.695 kcal (2) G-P(sol) polarization free energy of solvation -35.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 184.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 175.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds