Wall clock time and date at job start Sat Apr 11 2020 05:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99734 * 2 1 4 4 H 1.48505 * 109.47106 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47548 * 300.00029 * 3 2 1 6 6 H 1.48507 * 109.47147 * 60.00375 * 3 2 1 7 7 C 1.38808 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00362 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99940 * 359.97438 * 7 2 1 10 10 C 1.51826 * 127.61033 * 359.67089 * 9 7 2 11 11 C 1.54391 * 102.86597 * 140.54207 * 10 9 7 12 12 H 1.09002 * 117.61671 * 243.59303 * 11 10 9 13 13 C 1.54285 * 106.22189 * 24.11779 * 11 10 9 14 14 H 1.09007 * 121.81562 * 221.52879 * 13 11 10 15 15 C 1.48144 * 127.83598 * 179.97438 * 9 7 2 16 16 C 1.52992 * 59.72383 * 113.48963 * 13 11 10 17 17 H 1.09003 * 117.44347 * 252.34940 * 16 13 11 18 18 N 1.46497 * 117.40891 * 107.66215 * 16 13 11 19 19 C 1.34773 * 120.00197 * 135.77194 * 18 16 13 20 20 O 1.21556 * 120.00244 * 0.02562 * 19 18 16 21 21 C 1.47857 * 120.00346 * 179.97438 * 19 18 16 22 22 C 1.39623 * 120.11118 * 0.02562 * 21 19 18 23 23 C 1.37971 * 119.98437 * 179.97438 * 22 21 19 24 24 C 1.38270 * 120.21669 * 359.97438 * 23 22 21 25 25 C 1.38901 * 120.22689 * 0.02562 * 24 23 22 26 26 N 1.40278 * 119.99227 * 179.97438 * 25 24 23 27 27 C 1.36111 * 125.94415 * 4.71061 * 26 25 24 28 28 C 1.35361 * 106.05084 * 179.84694 * 27 26 25 29 29 N 1.33778 * 106.53854 * 0.41066 * 28 27 26 30 30 N 1.28605 * 109.05950 * 359.73558 * 29 28 27 31 31 C 1.38587 * 120.01441 * 359.73704 * 25 24 23 32 32 H 0.96995 * 119.99945 * 359.97438 * 1 2 3 33 33 H 1.08992 * 112.26519 * 21.85572 * 10 9 7 34 34 H 1.08999 * 110.21712 * 258.26579 * 10 9 7 35 35 H 1.09002 * 110.40706 * 100.80382 * 15 9 7 36 36 H 1.09001 * 110.41178 * 338.37370 * 15 9 7 37 37 H 0.97005 * 120.00004 * 315.77445 * 18 16 13 38 38 H 1.07997 * 120.00812 * 359.94790 * 22 21 19 39 39 H 1.07996 * 119.89398 * 180.02562 * 23 22 21 40 40 H 1.07997 * 119.88777 * 180.02562 * 24 23 22 41 41 H 1.08002 * 126.97289 * 0.02562 * 27 26 25 42 42 H 1.08007 * 126.73409 * 180.14318 * 28 27 26 43 43 H 1.08000 * 120.10862 * 180.27556 * 31 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1793 -2.5892 0.0069 11 6 -0.3713 -3.7836 -0.9523 12 1 -0.9350 -3.6100 -1.8689 13 6 0.9649 -4.5550 -0.9529 14 1 1.3965 -4.9560 -1.8700 15 6 1.8845 -3.7600 -0.0016 16 6 -0.2957 -5.1961 -0.3693 17 1 -0.3528 -5.2960 0.7147 18 7 -0.9194 -6.2773 -1.1363 19 6 -1.3385 -7.3939 -0.5086 20 8 -1.1995 -7.5038 0.6940 21 6 -1.9685 -8.4849 -1.2826 22 6 -2.1298 -8.3611 -2.6639 23 6 -2.7175 -9.3810 -3.3837 24 6 -3.1477 -10.5275 -2.7417 25 6 -2.9916 -10.6601 -1.3678 26 7 -3.4303 -11.8252 -0.7214 27 6 -3.9397 -12.9320 -1.3282 28 6 -4.2261 -13.8053 -0.3344 29 7 -3.8939 -13.2004 0.8116 30 7 -3.4264 -12.0313 0.5492 31 6 -2.3981 -9.6436 -0.6363 32 1 -0.4850 0.8400 0.0004 33 1 -0.7146 -1.7148 -0.3630 34 1 -0.5197 -2.8483 1.0094 35 1 1.8513 -4.1847 1.0018 36 1 2.9071 -3.7537 -0.3789 37 1 -1.0306 -6.1896 -2.0959 38 1 -1.7950 -7.4670 -3.1688 39 1 -2.8412 -9.2838 -4.4521 40 1 -3.6067 -11.3227 -3.3103 41 1 -4.0832 -13.0838 -2.3878 42 1 -4.6452 -14.7946 -0.4447 43 1 -2.2719 -9.7470 0.4313 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963068431.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:07 Heat of formation + Delta-G solvation = 150.931645 kcal Electronic energy + Delta-G solvation = -27241.052561 eV Core-core repulsion = 23290.289334 eV Total energy + Delta-G solvation = -3950.763228 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.48130 -41.55530 -40.32176 -39.32556 -36.14914 -35.73594 -34.38444 -32.85273 -32.19556 -31.71185 -30.90861 -28.84055 -27.71457 -25.71856 -25.41180 -23.89317 -23.06027 -22.43921 -21.99491 -21.48170 -20.81610 -19.91382 -18.91561 -17.99279 -17.78153 -17.56960 -17.30497 -16.74985 -16.22796 -16.11928 -16.05787 -15.54369 -15.41701 -15.03081 -14.90277 -14.83227 -14.59337 -14.09945 -13.81213 -13.27749 -13.11739 -13.09777 -13.02168 -12.97665 -12.75980 -12.50116 -12.15015 -12.09473 -12.05015 -11.97856 -11.76314 -11.67632 -11.28945 -10.97678 -10.69804 -10.51422 -10.30253 -9.85428 -9.72334 -8.97605 -7.76841 -5.24201 -0.60120 -0.26678 0.86679 1.18453 1.48445 1.49365 1.51782 1.59628 1.63761 1.80572 2.48982 2.58062 2.87791 3.25305 3.33446 3.42046 3.53748 3.62260 3.73366 3.82059 3.87132 3.92323 4.01102 4.12646 4.18485 4.21592 4.24683 4.36325 4.54165 4.58133 4.71491 4.76546 4.87851 4.97457 5.01720 5.04920 5.13791 5.23320 5.26820 5.34079 5.42435 5.45458 5.49130 5.76689 5.76865 6.25147 6.38645 7.01829 7.04725 7.36009 7.68572 8.43116 9.24996 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034356 B = 0.001801 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.801242 B =15546.512170 C =15920.672602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.070 4.070 3 Si 0.984 3.016 4 H -0.267 1.267 5 H -0.289 1.289 6 H -0.295 1.295 7 C -0.229 4.229 8 H 0.085 0.915 9 N -0.625 5.625 10 C 0.151 3.849 11 C -0.168 4.168 12 H 0.127 0.873 13 C -0.166 4.166 14 H 0.138 0.862 15 C 0.151 3.849 16 C 0.110 3.890 17 H 0.103 0.897 18 N -0.671 5.671 19 C 0.556 3.444 20 O -0.581 6.581 21 C -0.126 4.126 22 C -0.065 4.065 23 C -0.085 4.085 24 C -0.072 4.072 25 C 0.093 3.907 26 N -0.247 5.247 27 C -0.029 4.029 28 C -0.054 4.054 29 N -0.305 5.305 30 N -0.135 5.135 31 C -0.068 4.068 32 H 0.249 0.751 33 H 0.111 0.889 34 H -0.006 1.006 35 H 0.019 0.981 36 H 0.063 0.937 37 H 0.420 0.580 38 H 0.167 0.833 39 H 0.195 0.805 40 H 0.186 0.814 41 H 0.251 0.749 42 H 0.231 0.769 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.572 -26.619 -17.488 33.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.262 4.262 3 Si 0.812 3.188 4 H -0.191 1.191 5 H -0.216 1.216 6 H -0.223 1.223 7 C -0.358 4.358 8 H 0.102 0.898 9 N -0.350 5.350 10 C 0.027 3.973 11 C -0.189 4.189 12 H 0.145 0.855 13 C -0.187 4.187 14 H 0.156 0.844 15 C 0.026 3.974 16 C 0.003 3.997 17 H 0.121 0.879 18 N -0.321 5.321 19 C 0.345 3.655 20 O -0.462 6.462 21 C -0.130 4.130 22 C -0.084 4.084 23 C -0.103 4.103 24 C -0.092 4.092 25 C 0.003 3.997 26 N -0.034 5.034 27 C -0.177 4.177 28 C -0.211 4.211 29 N -0.170 5.170 30 N -0.113 5.113 31 C -0.090 4.090 32 H 0.059 0.941 33 H 0.128 0.872 34 H 0.012 0.988 35 H 0.037 0.963 36 H 0.082 0.918 37 H 0.259 0.741 38 H 0.185 0.815 39 H 0.212 0.788 40 H 0.203 0.797 41 H 0.267 0.733 42 H 0.247 0.753 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.109 -25.892 -15.192 31.371 hybrid contribution 0.168 0.740 -0.270 0.805 sum -8.941 -25.153 -15.461 30.849 Atomic orbital electron populations 1.69740 1.06229 1.24985 1.59004 1.25603 0.96628 1.00894 1.03080 0.84920 0.78022 0.79135 0.76687 1.19141 1.21561 1.22272 1.19529 0.90973 0.83337 1.41944 0.89755 1.46437 1.02121 1.00485 1.85913 1.22328 0.84873 0.96468 0.93628 1.24325 1.01324 0.90577 1.02675 0.85490 1.24310 0.90080 1.01793 1.02546 0.84446 1.21211 0.96161 0.84439 0.95633 1.21471 0.97364 0.85439 0.95431 0.87915 1.44992 1.59727 1.15445 1.11924 1.18644 0.77580 0.82456 0.86864 1.90803 1.57787 1.80861 1.16713 1.19569 1.04230 0.93792 0.95364 1.21933 0.94884 1.00932 0.90657 1.21565 0.95451 0.90553 1.02777 1.21660 0.97622 1.00738 0.89229 1.17764 1.03825 0.84965 0.93179 1.44981 1.39815 1.12911 1.05741 1.24759 1.03107 0.85657 1.04210 1.24456 1.05564 1.03823 0.87240 1.75099 1.13752 1.00407 1.27727 1.78489 1.21708 1.14279 0.96815 1.20855 0.95544 0.91944 1.00625 0.94114 0.87200 0.98827 0.96340 0.91817 0.74093 0.81550 0.78796 0.79726 0.73338 0.75286 0.86597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.80 10.12 21.65 0.22 -55.58 16 2 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 3 Si 0.98 45.23 29.55 68.60 2.03 47.26 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 6 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 7 C -0.23 -12.76 10.42 84.03 0.88 -11.89 16 8 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 9 N -0.62 -32.29 3.46 -678.24 -2.35 -34.64 16 10 C 0.15 7.44 6.43 85.80 0.55 7.99 16 11 C -0.17 -6.11 6.96 -9.89 -0.07 -6.17 16 12 H 0.13 4.00 8.14 -2.39 -0.02 3.98 16 13 C -0.17 -5.55 7.05 -9.90 -0.07 -5.62 16 14 H 0.14 3.70 8.14 -2.38 -0.02 3.68 16 15 C 0.15 6.32 7.05 86.52 0.61 6.93 16 16 C 0.11 3.59 5.97 44.99 0.27 3.86 16 17 H 0.10 4.07 7.40 -2.39 -0.02 4.06 16 18 N -0.67 -16.13 5.51 -445.41 -2.46 -18.59 16 19 C 0.56 15.61 7.77 86.79 0.67 16.29 16 20 O -0.58 -22.69 15.91 -3.89 -0.06 -22.76 16 21 C -0.13 -2.49 5.87 -20.10 -0.12 -2.60 16 22 C -0.07 -0.57 9.54 22.54 0.21 -0.36 16 23 C -0.09 -0.24 10.02 22.21 0.22 -0.02 16 24 C -0.07 -0.37 9.45 22.44 0.21 -0.16 16 25 C 0.09 1.49 6.67 38.03 0.25 1.75 16 26 N -0.25 -4.61 3.56 -187.15 -0.67 -5.28 16 27 C -0.03 -0.28 10.91 83.36 0.91 0.63 16 28 C -0.05 -0.74 12.05 83.73 1.01 0.27 16 29 N -0.30 -7.70 12.39 -58.24 -0.72 -8.42 16 30 N -0.14 -3.74 12.42 37.02 0.46 -3.28 16 31 C -0.07 -1.57 9.16 22.65 0.21 -1.36 16 32 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 33 H 0.11 6.07 5.34 -2.39 -0.01 6.05 16 34 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 35 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.42 6.34 6.86 -92.70 -0.64 5.70 16 38 H 0.17 0.50 6.40 -2.91 -0.02 0.48 16 39 H 0.19 -1.13 8.06 -2.91 -0.02 -1.15 16 40 H 0.19 -0.73 6.77 -2.91 -0.02 -0.75 16 41 H 0.25 -0.84 7.12 -2.91 -0.02 -0.86 16 42 H 0.23 1.04 8.06 -2.91 -0.02 1.01 16 43 H 0.12 3.55 7.29 -2.91 -0.02 3.53 16 Total: -1.00 -88.13 365.22 3.11 -85.02 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 0.44 Total: 10.19 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 6.22 Total: 6.07 kcal Atomic # 7 Polarization: -120.26 SS G_CDS: -5.51 Total: -125.78 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.06 Total: -22.76 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -88.13 3.11 -85.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963068431.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 235.952 kcal (2) G-P(sol) polarization free energy of solvation -88.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds