Wall clock time and date at job start Sat Apr 11 2020 05:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 119.99884 * 2 1 4 4 H 1.48495 * 109.47077 * 269.99944 * 3 2 1 5 5 H 1.48506 * 109.46904 * 29.99641 * 3 2 1 6 6 H 1.48496 * 109.46971 * 149.99479 * 3 2 1 7 7 C 1.38812 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00087 * 189.10210 * 7 2 1 9 9 N 1.36939 * 119.99965 * 9.09882 * 7 2 1 10 10 C 1.48150 * 127.83465 * 15.59532 * 9 7 2 11 11 C 1.54392 * 104.61386 * 140.39458 * 10 9 7 12 12 H 1.08993 * 118.17803 * 244.19801 * 11 10 9 13 13 C 1.53000 * 118.12445 * 87.18934 * 11 10 9 14 14 H 1.09003 * 117.44249 * 16.05878 * 13 11 10 15 15 C 1.52998 * 117.44512 * 160.80708 * 13 11 10 16 16 N 1.46502 * 109.47196 * 184.99921 * 15 13 11 17 17 C 1.34770 * 119.99596 * 180.02562 * 16 15 13 18 18 O 1.21483 * 120.00326 * 0.02562 * 17 16 15 19 19 C 1.48441 * 119.99622 * 179.72757 * 17 16 15 20 20 N 1.33484 * 119.22039 * 359.72612 * 19 17 16 21 21 N 1.28920 * 122.02659 * 179.74114 * 20 19 17 22 22 C 1.33815 * 119.73842 * 0.52576 * 21 20 19 23 23 C 1.40340 * 121.77619 * 179.71837 * 22 21 20 24 24 C 1.36191 * 119.62314 * 180.02562 * 23 22 21 25 25 C 1.39446 * 121.07063 * 0.02562 * 24 23 22 26 26 C 1.36131 * 121.01580 * 359.97438 * 25 24 23 27 27 C 1.40511 * 119.56340 * 359.97438 * 26 25 24 28 28 N 1.32058 * 119.21680 * 180.02562 * 19 17 16 29 29 C 1.53002 * 60.55662 * 268.46186 * 13 11 10 30 30 H 1.09001 * 119.53369 * 248.23697 * 29 13 11 31 31 C 1.48141 * 127.83932 * 195.57069 * 9 7 2 32 32 H 0.96999 * 120.00159 * 0.02562 * 1 2 3 33 33 H 1.08996 * 110.40956 * 21.60633 * 10 9 7 34 34 H 1.09002 * 110.40172 * 259.17605 * 10 9 7 35 35 H 1.09006 * 109.46885 * 65.00137 * 15 13 11 36 36 H 1.08998 * 109.46846 * 305.00212 * 15 13 11 37 37 H 0.96997 * 119.99499 * 359.97438 * 16 15 13 38 38 H 1.07991 * 120.18919 * 0.03710 * 23 22 21 39 39 H 1.07996 * 119.46257 * 180.02562 * 24 23 22 40 40 H 1.08002 * 119.49433 * 180.02562 * 25 24 23 41 41 H 1.07998 * 120.22373 * 180.02562 * 26 25 24 42 42 H 1.09001 * 110.41117 * 100.82012 * 31 9 7 43 43 H 1.09001 * 110.50233 * 338.43914 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0800 -1.2079 0.1485 9 7 1.3385 -2.3807 -0.1865 10 6 -0.0340 -2.5711 -0.7106 11 6 0.0643 -3.8172 -1.6167 12 1 -0.1224 -3.6940 -2.6834 13 6 -0.1179 -5.1932 -0.9730 14 1 -0.5673 -5.2280 0.0195 15 6 -0.4666 -6.3628 -1.8957 16 7 -0.7169 -7.5615 -1.0914 17 6 -1.0432 -8.7216 -1.6947 18 8 -1.1293 -8.7735 -2.9054 19 6 -1.2909 -9.9376 -0.8803 20 7 -1.1807 -9.8658 0.4481 21 7 -1.3885 -10.8866 1.2075 22 6 -1.7154 -12.0641 0.6622 23 6 -1.9452 -13.2040 1.4478 24 6 -2.2749 -14.3807 0.8466 25 6 -2.3882 -14.4733 -0.5402 26 6 -2.1729 -13.3896 -1.3355 27 6 -1.8318 -12.1580 -0.7515 28 7 -1.6091 -11.0663 -1.4874 29 6 1.2865 -4.5975 -1.0895 30 1 2.0103 -5.0555 -1.7637 31 6 1.8196 -3.7545 0.0889 32 1 -0.4850 0.8400 -0.0004 33 1 -0.3430 -1.7021 -1.2915 34 1 -0.7317 -2.7501 0.1076 35 1 0.3642 -6.5488 -2.5763 36 1 -1.3596 -6.1180 -2.4708 37 1 -0.6470 -7.5202 -0.1249 38 1 -1.8611 -13.1485 2.5230 39 1 -2.4516 -15.2562 1.4537 40 1 -2.6515 -15.4191 -0.9902 41 1 -2.2645 -13.4757 -2.4081 42 1 1.4114 -4.1184 1.0318 43 1 2.9091 -3.7800 0.1122 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978499201.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:26 Heat of formation + Delta-G solvation = 132.578227 kcal Electronic energy + Delta-G solvation = -27053.256564 eV Core-core repulsion = 23101.697472 eV Total energy + Delta-G solvation = -3951.559091 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.53462 -39.92539 -38.82444 -38.41433 -35.86985 -35.04493 -33.45326 -32.57659 -31.57760 -30.81049 -28.05160 -27.11223 -26.63959 -25.97284 -24.66072 -23.18712 -21.82153 -21.15259 -20.23898 -19.83666 -19.33974 -19.16049 -17.90792 -16.82206 -16.70219 -16.60428 -16.07668 -15.57839 -15.21142 -15.02644 -14.83414 -14.43854 -14.02181 -13.69322 -13.54775 -13.23976 -13.04175 -12.93644 -12.79328 -12.66037 -12.63822 -12.40469 -12.03589 -11.82959 -11.25749 -11.09632 -10.83296 -10.67239 -10.57389 -10.27656 -10.22438 -10.11519 -9.86374 -9.72812 -9.48266 -9.36965 -9.15278 -8.98980 -8.62685 -6.85129 -5.78373 -3.12614 -0.85401 -0.44864 1.03436 1.73813 2.33069 2.63495 2.93518 3.28943 3.32379 3.39548 3.44814 3.46691 3.58978 3.85941 4.04920 4.15493 4.30863 4.46977 4.49327 4.53956 4.84550 4.87235 5.08547 5.22258 5.28273 5.29713 5.40071 5.45178 5.50145 5.53030 5.75333 5.82313 5.86087 5.90463 5.97788 6.19227 6.24047 6.31240 6.56316 6.68096 6.72704 6.94019 7.21276 7.37835 7.54941 7.68811 7.73352 7.87779 8.22556 9.12592 9.75327 10.52468 11.35955 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033741 B = 0.001735 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.643148 B =16130.228132 C =16596.800116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.594 5.594 10 C 0.183 3.817 11 C -0.160 4.160 12 H 0.104 0.896 13 C -0.152 4.152 14 H 0.106 0.894 15 C 0.154 3.846 16 N -0.696 5.696 17 C 0.585 3.415 18 O -0.503 6.503 19 C 0.221 3.779 20 N -0.233 5.233 21 N -0.137 5.137 22 C 0.019 3.981 23 C -0.066 4.066 24 C -0.090 4.090 25 C -0.071 4.071 26 C -0.087 4.087 27 C 0.133 3.867 28 N -0.395 5.395 29 C -0.170 4.170 30 H 0.104 0.896 31 C 0.154 3.846 32 H 0.254 0.746 33 H 0.090 0.910 34 H 0.024 0.976 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.414 0.586 38 H 0.153 0.847 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.153 0.847 42 H 0.025 0.975 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.344 -31.883 0.748 32.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.355 4.355 8 H 0.094 0.906 9 N -0.318 5.318 10 C 0.058 3.942 11 C -0.180 4.180 12 H 0.122 0.878 13 C -0.171 4.171 14 H 0.124 0.876 15 C 0.032 3.968 16 N -0.349 5.349 17 C 0.365 3.635 18 O -0.374 6.374 19 C -0.052 4.052 20 N -0.094 5.094 21 N 0.000 5.000 22 C -0.114 4.114 23 C -0.088 4.088 24 C -0.111 4.111 25 C -0.094 4.094 26 C -0.106 4.106 27 C -0.006 4.006 28 N -0.117 5.117 29 C -0.190 4.190 30 H 0.122 0.878 31 C 0.027 3.973 32 H 0.064 0.936 33 H 0.109 0.891 34 H 0.042 0.958 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.251 0.749 38 H 0.170 0.830 39 H 0.164 0.836 40 H 0.164 0.836 41 H 0.170 0.830 42 H 0.043 0.957 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.151 -30.645 0.151 31.256 hybrid contribution 0.227 0.012 0.111 0.253 sum -5.923 -30.632 0.262 31.201 Atomic orbital electron populations 1.69896 1.05045 1.25408 1.55843 1.24896 0.95647 0.97962 1.01797 0.86109 0.78685 0.83268 0.77632 1.21510 1.21668 1.20557 1.19007 0.90820 0.82379 1.43276 0.90569 1.45204 1.13350 1.00004 1.73226 1.21076 0.86861 0.92700 0.93602 1.24244 1.02064 0.91594 1.00119 0.87782 1.22526 1.00607 0.93582 1.00393 0.87586 1.21033 1.01612 0.81472 0.92703 1.45857 1.68343 1.08636 1.12031 1.16948 0.78934 0.81332 0.86331 1.90837 1.50166 1.83914 1.12517 1.24444 0.96111 0.94607 0.89994 1.73982 1.09737 1.21641 1.04021 1.74521 1.02497 0.95217 1.27777 1.21035 1.00375 0.96279 0.93701 1.20847 0.97140 0.89811 1.00987 1.21272 0.96575 0.98168 0.95061 1.21291 0.95342 0.99097 0.93630 1.20953 0.98433 0.89345 1.01883 1.19762 0.96136 0.94272 0.90435 1.69100 1.06430 0.97880 1.38318 1.24003 0.89786 1.02531 1.02718 0.87846 1.21141 0.97165 0.85966 0.93006 0.93562 0.89147 0.95785 0.90774 0.90423 0.74891 0.82975 0.83593 0.83555 0.82972 0.95712 0.93181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.85 10.86 55.49 0.60 -26.25 16 2 C -0.01 -0.17 5.40 -17.43 -0.09 -0.26 16 3 Si 0.91 22.02 29.56 -169.99 -5.03 16.99 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.23 -6.34 10.35 -15.06 -0.16 -6.49 16 8 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 9 N -0.59 -15.24 3.38 -168.86 -0.57 -15.81 16 10 C 0.18 4.38 5.70 -2.40 -0.01 4.36 16 11 C -0.16 -2.98 6.85 -89.22 -0.61 -3.59 16 12 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 13 C -0.15 -2.33 5.39 -90.62 -0.49 -2.82 16 14 H 0.11 1.63 8.04 -51.93 -0.42 1.21 16 15 C 0.15 2.09 5.95 -4.04 -0.02 2.07 16 16 N -0.70 -8.96 5.54 -61.06 -0.34 -9.30 16 17 C 0.59 8.47 7.85 -12.06 -0.09 8.38 16 18 O -0.50 -8.67 16.86 5.38 0.09 -8.58 16 19 C 0.22 2.98 7.65 -156.57 -1.20 1.78 16 20 N -0.23 -2.95 10.72 32.10 0.34 -2.60 16 21 N -0.14 -1.57 11.68 32.28 0.38 -1.19 16 22 C 0.02 0.18 6.68 -84.71 -0.57 -0.39 16 23 C -0.07 -0.35 10.00 -39.53 -0.40 -0.75 16 24 C -0.09 -0.25 9.95 -39.87 -0.40 -0.65 16 25 C -0.07 -0.22 9.95 -39.89 -0.40 -0.61 16 26 C -0.09 -0.53 10.01 -39.48 -0.40 -0.93 16 27 C 0.13 1.33 6.61 -84.77 -0.56 0.77 16 28 N -0.40 -5.14 10.22 -8.99 -0.09 -5.24 16 29 C -0.17 -2.99 6.74 -89.22 -0.60 -3.59 16 30 H 0.10 1.67 8.12 -51.93 -0.42 1.25 16 31 C 0.15 3.21 7.04 -2.42 -0.02 3.19 16 32 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.09 2.42 6.51 -51.93 -0.34 2.08 16 34 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 1.02 7.94 -51.93 -0.41 0.61 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.41 4.80 7.71 -40.82 -0.31 4.49 16 38 H 0.15 0.52 8.06 -52.49 -0.42 0.09 16 39 H 0.15 -0.05 8.06 -52.49 -0.42 -0.48 16 40 H 0.15 -0.02 8.06 -52.49 -0.42 -0.44 16 41 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 369.69 15.07 5.57 5.57 Total: -1.00 -34.43 369.69 -10.30 -44.74 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -5.26 Total: 1.21 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -6.01 Total: 0.46 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: 0.32 Total: -60.39 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.09 Total: -8.58 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.43 -10.30 -44.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978499201.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.314 kcal (2) G-P(sol) polarization free energy of solvation -34.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds